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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027841 ID=TCONS_00027841|Name=TCONS_00027841|organism=Clytia hemisphaerica|type=transcript|length=3256bpRun BLAST on NCBI protein sequence of TCONS_00027841-protein >TCONS_00027841-protein ID=TCONS_00027841-protein|Name=TCONS_00027841-protein|organism=Clytia hemisphaerica|type=polypeptide|length=794bp MYQEQPVYQRAVLYRCRGFINRYHAPDWHPLYNSELREIEIYQPNILHIVRun BLAST on NCBI transcript from alignment at sc0000647:221713..234798- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00027841 ID=TCONS_00027841|Name=TCONS_00027841|organism=Clytia hemisphaerica|type=transcript|length=13086bp|location=Sequence derived from alignment at sc0000647:221713..234798- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000647:221713..234798- >TCONS_00027841 ID=TCONS_00027841|Name=TCONS_00027841|organism=Clytia hemisphaerica|type=CDS|length=31005bp|location=Sequence derived from alignment at sc0000647:221713..234798- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00027841 vs. Swiss-Prot (Human)
Match: HOIL1 (RanBP-type and C3HC4-type zinc finger-containing protein 1 OS=Homo sapiens GN=RBCK1 PE=1 SV=2) HSP 1 Score: 288.886 bits (738), Expect = 1.279e-85 Identity = 152/329 (46.20%), Postives = 217/329 (65.96%), Query Frame = 3
Query: 1677 PKKDELFWSCPQCTVLNRPTFASCSVCLGNRPDNFVIPVGYVLTXXXXXXXXXXXXXXXXXXXXXFKLKEQEAKDAQKNYIQVMQFAQQKIIPNPDDFDCPICYTNIDKGQGVMLRECYHCFCRECLIETVNASQETQVQCP--ENTDYPCAAIITEQEIGELLSQEEYAKYLERGLKHAEMNMDNSFHCKTTDCRGWCIYEDEVNEYICQLCAKKNCLTCQAQHPDMTCQEYQDDLKLRAKNDEDARKTQEWLDQLVAKGEAMHCPKCKVLLQKKSGCDWMRCTMCKTEICWATKGPRWGPGGKGDVSAGCKCGVDGIRCTPTCGNCH 2657
P+ + W CP CT +N+PT C +C RP+ + +P Y Q ++E EA + ++++ + + NY+Q +Q Q+ ++ N + +CP+CY+ + G+ V+LREC H FCRECL T+ SQE +V CP +NT Y C+ + E+EI LL+ E+Y ++L+ G+ AE S+HCKT DC+GWC +ED+VNE+ C +C NCL C+A H M C+EYQ+DL LRA+ND AR+T E L ++ +GEAM CP+C++++QKK GCDW+RCT+C TEICW TKGPRWGPGG GD S GC+C V+GI C P+C NCH
Sbjct: 190 PEPPPVGWQCPGCTFINKPTRPGCEMCCRARPEAYQVPASY-------QPDEEERARLAGEEEALRQYQQRKQQQQEGNYLQHVQLDQRSLVLNTEPAECPVCYSVLAPGEAVVLRECLHTFCRECLQGTIRNSQEAEVSCPFIDNT-YSCSGKLLEREIKALLTPEDYQRFLDLGISIAENRSAFSYHCKTPDCKGWCFFEDDVNEFTCPVCFHVNCLLCKAIHEQMNCKEYQEDLALRAQNDVAARQTTEMLKVMLQQGEAMRCPQCQIVVQKKDGCDWIRCTVCHTEICWVTKGPRWGPGGPGDTSGGCRCRVNGIPCHPSCQNCH 510 The following BLAST results are available for this feature:
BLAST of TCONS_00027841 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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