TCONS_00027841-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00027841-protein
Unique NameTCONS_00027841-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length794

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00027841-protein ID=TCONS_00027841-protein|Name=TCONS_00027841-protein|organism=Clytia hemisphaerica|type=polypeptide|length=794bp
MYQEQPVYQRAVLYRCRGFINRYHAPDWHPLYNSELREIEIYQPNILHIV
DQNAPLDIKFENNGKAEWKGGTQFFLQEGPERDIFGLALSPECNVEEFRT
IMERLLKGTLGGAVPRNQQQQQPPPVQPRVAFQQQQQQQQQQQQQQPPSY
QNENYQEHPLNNSMGPPSYSYDAEVSKLTDAIKSGNLQQAQRQVEILAKA
QLNLTILNSGNIEMNPNNLDDTDKQKTVLNITVIDQQQIEDTPDKPTPAV
RIRVNDLKKTTIQQLKAKFLSDNGFGIHVQRWIVDGRLAKESESLKYCGM
QNEGTKIFLYLTSTTGKNKPDNVADAFEAVNMPPLSPQHRNQQQNVRQPS
FEQPQQIQQQNFQQYQNQQNFPQQQQQQLNAMNDYIDNAIPQNMGQARMF
QSMAVGSANPRPLMGAQSYSPHNTVPPNYEFPNYAQARKQPPPGAVPVFP
PQPQQQVHRPQQTKPQEPKKDELFWSCPQCTVLNRPTFASCSVCLGNRPD
NFVIPVGYVLTEEEQQRKKQEEESERLALEAEFKLKEQEAKDAQKNYIQV
MQFAQQKIIPNPDDFDCPICYTNIDKGQGVMLRECYHCFCRECLIETVNA
SQETQVQCPENTDYPCAAIITEQEIGELLSQEEYAKYLERGLKHAEMNMD
NSFHCKTTDCRGWCIYEDEVNEYICQLCAKKNCLTCQAQHPDMTCQEYQD
DLKLRAKNDEDARKTQEWLDQLVAKGEAMHCPKCKVLLQKKSGCDWMRCT
MCKTEICWATKGPRWGPGGKGDVSAGCKCGVDGIRCTPTCGNCH
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_015731XLOC_015731Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00027841TCONS_00027841Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR001876Znf_RanBP2
IPR017907Znf_RING_CS
IPR000626Ubiquitin_dom
IPR029071Ubiquitin-rel_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 510..546
NoneNo IPR availableGENE3D2.20.25.20coord: 730..779
e-value: 6.6E-4
score: 19.5
NoneNo IPR availableGENE3D4.10.1060.10coord: 462..521
e-value: 7.2E-6
score: 24.8
NoneNo IPR availableGENE3D3.10.20.90coord: 211..320
e-value: 8.6E-7
score: 28.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 332..376
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 414..469
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 114..171
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 636..702
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 719..768
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 561..609
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 567..611
e-value: 0.0045
score: 26.2
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 566..609
e-value: 1.6E-6
score: 28.2
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 567..609
score: 10.748
IPR001841Zinc finger, RING-typeCDDcd00162RINGcoord: 566..609
e-value: 0.00218017
score: 35.8844
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 548..639
e-value: 4.8E-8
score: 31.9
IPR001876Zinc finger, RanBP2-typePROSITEPS01358ZF_RANBP2_1coord: 475..494
IPR001876Zinc finger, RanBP2-typePROSITEPS50199ZF_RANBP2_2coord: 470..500
score: 8.422
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 585..594
IPR000626Ubiquitin domainPROSITEPS50053UBIQUITIN_2coord: 229..305
score: 8.894
IPR029071Ubiquitin-related domainSUPERFAMILY54236Ubiquitin-likecoord: 258..317

Blast
[Close]
BLAST of TCONS_00027841-protein vs. Swiss-Prot (Human)
Match: HOIL1 (RanBP-type and C3HC4-type zinc finger-containing protein 1 OS=Homo sapiens GN=RBCK1 PE=1 SV=2)

HSP 1 Score: 308.531 bits (789), Expect = 4.795e-96
Identity = 177/438 (40.41%), Postives = 250/438 (57.08%), Query Frame = 0 
Query:  359 QQNFQQYQNQQNFPQQQQQQLNAMNDYIDNAIPQNMGQARMFQSMAVGSANPRPLMGAQSYSPHNTVPPNYEFPNYAQARKQPPPGAVPVFPPQPQQQVHRPQQTKPQEPKKDELFWSCPQCTVLNRPTFASCSVCLGNRPDNFVIPVGYVLTEEEQQRKKQEEESERLALEAEFKLKEQEAKDAQKNYIQVMQFAQQKIIPNPDDFDCPICYTNIDKGQGVMLRECYHCFCRECLIETVNASQETQVQCP--ENTDYPCAAIITEQEIGELLSQEEYAKYLERGLKHAEMNMDNSFHCKTTDCRGWCIYEDEVNEYICQLCAKKNCLTCQAQHPDMTCQEYQDDLKLRAKNDEDARKTQEWLDQLVAKGEAMHCPKCKVLLQKKSGCDWMRCTMCKTEICWATKGPRWGPGGKGDVSAGCKCGVDGIRCTPTCGNCH 794
            Q+    +  +QN        L+A N  ++    Q   Q RM + +          +  Q   P    PP    P   Q   +  P AVP  PP                     + W CP CT +N+PT   C +C   RP+ + +P  Y   EEE+ R   EEE       A  + ++++ +  + NY+Q +Q  Q+ ++ N +  +CP+CY+ +  G+ V+LREC H FCRECL  T+  SQE +V CP  +NT Y C+  + E+EI  LL+ E+Y ++L+ G+  AE     S+HCKT DC+GWC +ED+VNE+ C +C   NCL C+A H  M C+EYQ+DL LRA+ND  AR+T E L  ++ +GEAM CP+C++++QKK GCDW+RCT+C TEICW TKGPRWGPGG GD S GC+C V+GI C P+C NCH
Sbjct:  111 QETLHSHGVRQNGDSAYLYLLSARNTSLNPQELQRERQLRMLEDLGFKD------LTLQPRGPLEPGPPK---PGVPQEPGRGQPDAVPEPPP---------------------VGWQCPGCTFINKPTRPGCEMCCRARPEAYQVPASYQPDEEERARLAGEEE-------ALRQYQQRKQQQQEGNYLQHVQLDQRSLVLNTEPAECPVCYSVLAPGEAVVLRECLHTFCRECLQGTIRNSQEAEVSCPFIDNT-YSCSGKLLEREIKALLTPEDYQRFLDLGISIAENRSAFSYHCKTPDCKGWCFFEDDVNEFTCPVCFHVNCLLCKAIHEQMNCKEYQEDLALRAQNDVAARQTTEMLKVMLQQGEAMRCPQCQIVVQKKDGCDWIRCTVCHTEICWVTKGPRWGPGGPGDTSGGCRCRVNGIPCHPSCQNCH 510
The following BLAST results are available for this feature:
BLAST of TCONS_00027841-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HOIL14.795e-9640.41RanBP-type and C3HC4-type zinc finger-containing p... [more]
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