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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027840 ID=TCONS_00027840|Name=TCONS_00027840|organism=Clytia hemisphaerica|type=transcript|length=2260bp
ATGATTTTCTGGCGTCcgtcagtaacgtaaataaaaccTGGGATACACTG
GGACGAGGTTgcttatttacaagaaaggttTTTTTAACACGGAGTTTTGG
ATTGTATTTGCAATGCTGTAGCTTTGGAGAGTACAATTAGCGATTCATTA
CATCCCTATTGATTGATGATTATGAGCCAGATACAGCCGGGTCTCCATAT
CTCGAACACGCGCATGGAACACAAATTATTTCGAGTGAAGGAATGGAGTT
TAGAAGACACTGTCAACCTGAAGGGACCCCACTAAACTTGTTCGAGCTAA
ggaaacattcgagttataaaggttcAAGCTAAAGAGATTCCACTGTAGTA
ATAATCGCAGGGATGCAGCAGGATATCGTTTGGGATCGTCCTTCGTTCAC
ATAAGATAATGGCTAAAAATTAATAGGAGATTCATAAACAAAgaaacttt
ttacaatgatNCAATACTTCCCTGATACAGAGAGATTCAAAAATCTGAAA
CTGGGCTCCAAACAAAGGCACGATTACGCAAACAAAATGTTTAACGAACA
CATTGCCACTTTTGATCCACACAATATCAGAGATCTAACTGACAATCTTC
TCCACTTttcacaaaacaaagaaatgtggAAAGATGCTGGATTCGAAAAG
GTGACACAAGAACAACTTGAATCTGTAGTCAGCTCCATCATGTTTGCCGG
TGTGGAAACGCAATCTGCAACTTTCCGATGGCTACTACTGTTNCCGATAT
ACCAAGCAAGATCACCAGTAGAAACTTCACAAGCCTTGGCCATTGTGATT
ATTCAAAAAGTTGGGCATTCTTGAGGAAAGTTTCGTATAAAAGTTTACAT
ATCTATGGATCAGGAATGAAGAGGCTTGAAGATTTGATTACAGAGGAAGT
TGACAAGATGTGTTCAACACTGTCTCGAGACCTTGGGAAACCGATTTTGA
TTGACTCCTACATTGGAAATTCTCTAATCAACACAATTTGCCACATGTGC
TTTAGCAAAACGTATGATTTCGATGATCCAGAGTTTGCTCATATTATGGG
CTTCTTCAAAATGATAAACGATGGATCTTTACCTGGTCAAGCCATCTCCA
TATTTCCTTGGCTTCAATACTTCCCTGATACAGAGAGATTCAAAAATCTG
AAACTGGGCTCCAAACAAAGGCACGATTACGCAAACAAAATGTTTAACGA
ACACATTGCCACTTTTAATCCACACAATATCAGAGATCTAACTGACAATC
TTCTCCACTTttcacaaaacaaagaaatgtggAAAGATGCTGGATTCGAA
AAGGTGACACAAGAACAACTTGAATCTGTAGTCAGCTCCATCATGTTTGC
CGGTGTGGAAACGCAATCTGCAACTTTCCGATGGCTACTACTGTTCATGT
TACACCACCCTGAATATCAAACAAAGATCTACGAAGAAATCAAATCGAAT
GTTGGGCTGAAGCGTCGGATATCTCCAGAAGACAAGGAAGTAGCAACAAT
CACAAGTTGCGTCATCCTTGAAACCCATCGAATGGCATCTGTCGGCCCAC
TAAGCCTTCCTCACAAAACAACCGTCGATACTTCGGTCGGTGGACACACA
ATCCCCAAGAATACGACAATCTTTACAAACCTGTACAGCATGCACTACGA
TCCTACACACTGGGATGAACCAGAGAAATTCAAACCAGAACGTTGGTTAA
ATGCTGATGGAAGTTTGAAGAAAGAAAAGGCAACACATTATCTCCCTTTC
TCAGCGGGAACTCGTGTTTGTCTCGCGGAAAAGATGGCCCAATTGCAACT
ATTCATGATAACAACTAATTTCTTTCGTAATTTTGAAGTATCATTGGCTC
CGGGAGAGCAGTTACCATCACTTAAAGATGGCGTCATGGGGATAACATTA
AATCCACCTCGCCGTAAAATCATCCTGACCCGACGAAAACACAACTAAGG
GGGATAACTAACGAGTATGACGAAcgataaatgataaaaaaaccCTAGAA
TGAATAGGACGTAACTCACAACCAATTTGATGTTCGGATGCAACTTTTTG
ATATGCTCTTAATTTACCACGTAATGTCGAAACATGAACCTAACGTAAGA
GCAAACTTGTTTCAGAAATAAATACAGAGATATAATAAGACAGCACTTTT
GTAAATGTATGGTTAATGTATGATTTCTTTCTAAAACTAAAACGATGTAG
TAAATTtcaggaaaaaacatttttttatacaaTATAAAACTTTAGAAGAT
AGGATACAAT Run BLAST on NCBI protein sequence of TCONS_00027840-protein >TCONS_00027840-protein ID=TCONS_00027840-protein|Name=TCONS_00027840-protein|organism=Clytia hemisphaerica|type=polypeptide|length=406bp
MATTVXDIPSKITSRNFTSLGHCDYSKSWAFLRKVSYKSLHIYGSGMKRL
EDLITEEVDKMCSTLSRDLGKPILIDSYIGNSLINTICHMCFSKTYDFDD
PEFAHIMGFFKMINDGSLPGQAISIFPWLQYFPDTERFKNLKLGSKQRHD
YANKMFNEHIATFNPHNIRDLTDNLLHFSQNKEMWKDAGFEKVTQEQLES
VVSSIMFAGVETQSATFRWLLLFMLHHPEYQTKIYEEIKSNVGLKRRISP
EDKEVATITSCVILETHRMASVGPLSLPHKTTVDTSVGGHTIPKNTTIFT
NLYSMHYDPTHWDEPEKFKPERWLNADGSLKKEKATHYLPFSAGTRVCLA
EKMAQLQLFMITTNFFRNFEVSLAPGEQLPSLKDGVMGITLNPPRRKIIL
TRRKHN Run BLAST on NCBI transcript from alignment at sc0000647:185664..188728- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027840 ID=TCONS_00027840|Name=TCONS_00027840|organism=Clytia hemisphaerica|type=transcript|length=3065bp|location=Sequence derived from alignment at sc0000647:185664..188728- (Clytia hemisphaerica)
ATGATTTTCTGGCGTCCGTCAGTAACGTAAATAAAACCTGGGATACACTG
GGACGAGGTTGCTTATTTACAAGAAAGGTTTTTTTAACACGGAGTTTTGG
ATTGTATTTGCAATGCTGTAGCTTTGGAGAGTACAATTAGCGATTCATTA
CATCCCTATTGATTGATGATTATGAGCCAGATACAGCCGGGTCTCCATAT
CTCGAACACGCGCATGGAACACAAATTATTTCGAGTGAAGGAATGGAGTT
TAGAAGACACTGTCAACCTGAAGGGACCCCACTAAACTTGTTCGAGCTAA
GGAAACATTCGAGTTATAAAGGTTCAAGCTAAAGAGATTCCACTGTAGTA
ATAATCGCAGGGATGCAGCAGGATATCGTTTGGGATCGTCCTTCGTTCAC
ATAAGATAATGGCTAAAAATTAATAGGAGATTCATAAACAAAGAAACTTT
TTACAATGATNCAATACTTCCCTGATACAGAGAGATTCAAAAATCTGAAA
CTGGGCTCCAAACAAAGGCACGATTACGCAAACAAAATGTTTAACGAACA
CATTGCCACTTTTGATCCACACAATATCAGAGATCTAACTGACAATCTTC
TCCACTTTTCACAAAACAAAGAAATGTGGAAAGATGCTGGATTCGAAAAG
GTGACACAAGAACAACTTGAATCTGTAGTCAGCTCCATCATGTTTGCCGG
TGTGGAAACGCAATCTGCAACTTTCCGATGGCTACTACTGTTNCCGATAT
ACCAAGCAAGATCACCAGTAGAAACTTCACAAGCCTTGGCCATTGTGATT
ATTCAAAAAGTTGGGCATTCTTGAGGAAAGTTTCGTATAAAAGTTTACAT
ATCTATGGATCAGGAATGAAGAGGCTTGAAGATTTGATTACAGAGGAAGT
TGACAAGATGTGTTCAACACTGTCTCGAGACCTTGGGAAACCGATTTTGA
TTGACTCCTACATTGGTAAGTATCTGTATTGAAATCATATTCCANCCAGA
AGACAAGGAAGTAGCAACAATCACAAGTTGCGTCATCCTTGAAACCCATC
GAATGGCATCTGTCGGCCCACTAAGCCTTCCTCACAAGACAACCGTCGAT
ACTTCGGTCGGTGGACACACAATCCCCAAGAATACGACAATCTTTACAAA
CCTCTACAGTATGCACTACGACCCTACACACTGGGATGAACCAGAGAAAT
TCAAACCAGAACGTTGGTTAAATGCTGATGGAAGTTTAAAGAAAGAAAAG
GCGACACACTATCTCCCTTTCTCAGCGGGAACTCGTGTTTGTCTCGCGGA
AAAGATGGCCCAATTGCAACTATTCATGATAACAACCNAAAATACTCAAT
GTCAAAAATTTTCGCGGTCAGAAGTCATGACATTCCTATAATTTTCGTAT
TTCTTGGGAATTTAATTTCGTGAATCACGAAGATAGATGTAATTTTTTTC
AGATTTTATAAAAGTAAGAGCAGATTGTAAATAATGCAAACCTAATGCTT
TTTTCGCGGGAAATTAATTCACAAATTTAATTTTGCAAATTTTAGAAAAT
TTTGACATTAAAGTATACAGTACTTTTTTATGGTTGGAGGAGCTCATATT
TCACCGCTTAGACGTTTAGTAATATGTTTGACATTTAGAAAAACTAGGAA
ACGAAATGTAAAATATCTTTGGCTTGGAACTATTACGTAATTTATGTTTG
AAATATTCTTGACTCTGATGCTTTGAAGAAGGATTATTAAATTTAATATT
CAAATTCTCTTTTCTTCCAGGAAATTCTCTAATCAACACAATTTGCCACA
TGTGCTTTAGCAAAACGTATGATTTCGATGATCCAGAGTTTGCTCATATT
ATGGGCTTCTTCAAAATGATAAACGATGGATCTTTACCTGGTCAAGCCAT
CTCCATATTTCCTTGGCTTCAATACTTCCCTGATACAGAGAGATTCAAAA
ATCTGAAACTGGGCTCCAAACAAAGGCACGATTACGCAAACAAAATGTTT
AACGAACACATTGCCACTTTTAATCCACACAATATCAGAGATCTAACTGA
CAATCTTCTCCACTTTTCACAAAACAAAGAAATGTGGAAAGATGCTGGAT
TCGAAAAGGTGACACAAGAACAACTTGAATCTGTAGTCAGCTCCATCATG
TTTGCCGGTGTGGAAACGCAATCTGCAACTTTCCGATGGCTACTACTGTT
CATGTTACACCACCCTGAATATCAAACAAAGATCTACGAAGAAATCAAAT
CGAATGTTGGGCTGAAGCGTCGGATATCTCCAGAAGACAAGGAAGTAGCA
ACAATCACAAGTTGCGTCATCCTTGAAACCCATCGAATGGCATCTGTCGG
CCCACTAAGCCTTCCTCACAAAACAACCGTCGATACTTCGGTCGGTGGAC
ACACAATCCCCAAGAATACGACAATCTTTACAAACCTGTACAGCATGCAC
TACGATCCTACACACTGGGATGAACCAGAGAAATTCAAACCAGAACGTTG
GTTAAATGCTGATGGAAGTTTGAAGAAAGAAAAGGCAACACATTATCTCC
CTTTCTCAGCGGGAACTCGTGTTTGTCTCGCGGAAAAGATGGCCCAATTG
CAACTATTCATGATAACAACTAATTTCTTTCGTAATTTTGAAGTATCATT
GGCTCCGGGAGAGCAGTTACCATCACTTAAAGATGGCGTCATGGGGATAA
CATTAAATCCACCTCGCCGTAAAATCATCCTGACCCGACGAAAACACAAC
TAAGGGGGATAACTAACGAGTATGACGAACGATAAATGATAAAAAAACCC
TAGAATGAATAGGACGTAACTCACAACCAATTTGATGTTCGGATGCAACT
TTTTGATATGCTCTTAATTTACCACGTAATGTCGAAACATGAACCTAACG
TAAGAGCAAACTTGTTTCAGAAATAAATACAGAGATATAATAAGACAGCA
CTTTTGTAAATGTATGGTTAATGTATGATTTCTTTCTAAAACTAAAACGA
TGTAGTAAATTTCAGGAAAAAACATTTTTTTATACAATATAAAACTTTAG
AAGATAGGATACAAT Coding sequence (CDS) from alignment at sc0000647:185664..188728- >TCONS_00027840 ID=TCONS_00027840|Name=TCONS_00027840|organism=Clytia hemisphaerica|type=CDS|length=2442bp|location=Sequence derived from alignment at sc0000647:185664..188728- (Clytia hemisphaerica)
GAAATTCTCTAATCAACACAATTTGCCACATGTGCTTTAGCAAAACGTAT
GATTTCGATGATCCAGAGTTTGCTCATATTATGGGCTTCTTCAAAATGAT
AAACGATGGATCTTTACCTGGTCAAGCCATCTCCATATTTCCTTGGCTTC
AATACTTCCCTGATACAGAGAGATTCAAAAATCTGAAACTGGGCTCCAAA
CAAAGGCACGATTACGCAAACAAAATGTTTAACGAACACATTGCCACTTT
TAATCCACACAATATCAGAGATCTAACTGACAATCTTCTCCACTTTTCAC
AAAACAAAGAAATGTGGAAAGATGCTGGATTCGAAAAGGTGACACAAGAA
CAACTTGAATCTGTAGTCAGCTCCATCATGTTTGCCGGTGTGGAAACGCA
ATCTGCAACTTTCCGATGGCTACTACTGTTCATGTTACACCACCCTGAAT
ATCAAACAAAGATCTACGAAGAAATCAAATCGAATGTTGGGCTGAAGCGT
CGGATATCTCCAGAAGACAAGGAAGTAGCAACAATCACAAGTTGCGTCAT
CCTTGAAACCCATCGAATGGCATCTGTCGGCCCACTAAGCCTTCCTCACA
AAACAACCGTCGATACTTCGGTCGGTGGACACACAATCCCCAAGAATACG
ACAATCTTTACAAACCTGTACAGCATGCACTACGATCCTACACACTGGGA
TGAACCAGAGAAATTCAAACCAGAACGTTGGTTAAATGCTGATGGAAGTT
TGAAGAAAGAAAAGGCAACACATTATCTCCCTTTCTCAGCGGGAACTCGT
GTTTGTCTCGCGGAAAAGATGGCCCAATTGCAACTATTCATGATAACAAC
TAATTTCTTTCGTAATTTTGAAGTATCATTGGCTCCGGGAGAGCAGTTAC
CATCACTTAAAGATGGCGTCATGGGGATAACATTAAATCCACCTCGCCGT
AAAATCATCCTGACCCGACGAAAACACAACTAAATGGCTACTACTGTTNC
CGATATACCAAGCAAGATCACCAGTAGAAACTTCACAAGCCTTGGCCATT
GTGATTATTCAAAAAGTTGGGCATTCTTGAGGAAAGTTTCGTATAAAAGT
TTACATATCTATGGATCAGGAATGAAGAGGCTTGAAGATTTGATTACAGA
GGAAGTTGACAAGATGTGTTCAACACTGTCTCGAGACCTTGGGAAACCGA
TTTTGATTGACTCCTACATTGGAAATTCTCTAATCAACACAATTTGCCAC
ATGTGCTTTAGCAAAACGTATGATTTCGATGATCCAGAGTTTGCTCATAT
TATGGGCTTCTTCAAAATGATAAACGATGGATCTTTACCTGGTCAAGCCA
TCTCCATATTTCCTTGGCTTCAATACTTCCCTGATACAGAGAGATTCAAA
AATCTGAAACTGGGCTCCAAACAAAGGCACGATTACGCAAACAAAATGTT
TAACGAACACATTGCCACTTTTAATCCACACAATATCAGAGATCTAACTG
ACAATCTTCTCCACTTTTCACAAAACAAAGAAATGTGGAAAGATGCTGGA
TTCGAAAAGGTGACACAAGAACAACTTGAATCTGTAGTCAGCTCCATCAT
GTTTGCCGGTGTGGAAACGCAATCTGCAACTTTCCGATGGCTACTACTGT
TCATGTTACACCACCCTGAATATCAAACAAAGATCTACGAAGAAATCAAA
TCGAATGTTGGGCTGAAGCGTCGGATATCTCCAGAAGACAAGGAAGTAGC
AACAATCACAAGTTGCGTCATCCTTGAAACCCATCGAATGGCATCTGTCG
GCCCACTAAGCCTTCCTCACAAAACAACCGTCGATACTTCGGTCGGTGGA
CACACAATCCCCAAGAATACGACAATCTTTACAAACCTGTACAGCATGCA
CTACGATCCTACACACTGGGATGAACCAGAGAAATTCAAACCAGAACGTT
GGTTAAATGCTGATGGAAGTTTGAAGAAAGAAAAGGCAACACATTATCTC
CCTTTCTCAGCGGGAACTCGTGTTTGTCTCGCGGAAAAGATGGCCCAATT
GCAACTATTCATGATAACAACTAATTTCTTTCGTAATTTTGAAGTATCAT
TGGCTCCGGGAGAGCAGTTACCATCACTTAAAGATGGCGTCATGGGGATA
ACATTAAATCCACCTCGCCGTAAAATCATCCTGACCCGACGAAAACACAA
CTAAATGGCTACTACTGTTNCCGATATACCAAGCAAGATCACCAGTAGAA
ACTTCACAAGCCTTGGCCATTGTGATTATTCAAAAAGTTGGGCATTCTTG
AGGAAAGTTTCGTATAAAAGTTTACATATCTATGGATCAGGAATGAAGAG
GCTTGAAGATTTGATTACAGAGGAAGTTGACAAGATGTGTTCAACACTGT
CTCGAGACCTTGGGAAACCGATTTTGATTGACTCCTACATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00027840-exon-sc0000647-1575043694:187764..188728 | TCONS_00027840-exon-sc0000647-1575043694:187764..188728 | Clytia hemisphaerica | exon |
| TCONS_00027840-exon-sc0000647-1575043694:185664..186958 | TCONS_00027840-exon-sc0000647-1575043694:185664..186958 | Clytia hemisphaerica | exon |
| TCONS_00027840-exon-sc0000647-1510915933:187764..188728 | TCONS_00027840-exon-sc0000647-1510915933:187764..188728 | Clytia hemisphaerica | exon |
| TCONS_00027840-exon-sc0000647-1510915933:185664..186958 | TCONS_00027840-exon-sc0000647-1510915933:185664..186958 | Clytia hemisphaerica | exon |
| TCONS_00027840-exon-sc0000647-1491911889:187764..188728 | TCONS_00027840-exon-sc0000647-1491911889:187764..188728 | Clytia hemisphaerica | exon |
| TCONS_00027840-exon-sc0000647-1491911889:185664..186958 | TCONS_00027840-exon-sc0000647-1491911889:185664..186958 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000647 | supercontig | sc0000647:185664..188728 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005506 | iron ion binding |
| GO:0020037 | heme binding |
| GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055114 | oxidation-reduction process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055114 |
oxidation-reduction process |
| molecular_function |
GO:0020037 |
heme binding |
| molecular_function |
GO:0005506 |
iron ion binding |
| molecular_function |
GO:0016705 |
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen |
Blast
BLAST of TCONS_00027840 vs. Swiss-Prot (Human)
Match: CP17A (Steroid 17-alpha-hydroxylase/17,20 lyase OS=Homo sapiens GN=CYP17A1 PE=1 SV=1) HSP 1 Score: 221.861 bits (564), Expect = 4.494e-63 Identity = 114/375 (30.40%), Postives = 194/375 (51.73%), Query Frame = 2
Query: 761 ITSRNFTSLGHCDYSKSWAFLRKVSYKSLHIYGSGMKRLEDLITEEVDKMCSTLSRDLGKPILIDSYIGNSLINTICHMCFSKTYDFDDPEFAHIMGFFKMINDGSLPGQAISIFPWLQYFPDTERFKNLKLGSKQRHDYANKMFNEHIATFNPHNIRDLTDNLLHF---SQNKEMWKDAGFEKVTQEQLESVVSSIMFAGVETQSATFRWLLLFMLHHPEYQTKIYEEIKSNVGLKRRISPEDKEVATITSCVILETHRMASVGPLSLPHKTTVDTSVGGHTIPKNTTIFTNLYSMHYDPTHWDEPEKFKPERWLNADGSLKKEKATHYLPFSAGTRVCLAEKMAQLQLFMITTNFFRNFEVSLAPGEQLPSLK 1876
I S N + D W R+++ + ++ G ++LE +I +E+ +C L+ G+ I I + ++ N I +CF+ +Y DPE I + + I D + + PWL+ FP+ + + LK K R+D NK+ + F +I ++ D L+ S N D E ++ + + + I AGVET ++ +W L F+LH+P+ + K+YEEI NVG R + D+ + I E R+ V P+ +PHK VD+S+G + K T + NL+++H++ W +P++F PER+LN G+ + YLPF AG R C+ E +A+ +LF+I + F++ + QLPSL+
Sbjct: 104 IASNNRKGIAFADSGAHWQLHRRLAMATFALFKDGDQKLEKIICQEISTLCDMLATHNGQSIDISFPVFVAVTNVISLICFNTSYKNGDPELNVIQNYNEGIIDNLSKDSLVDLVPWLKIFPN-KTLEKLKSHVKIRNDLLNKILENYKEKFRSDSITNMLDTLMQAKMNSDNGNAGPDQDSELLSDNHILTTIGDIFGAGVETTTSVVKWTLAFLLHNPQVKKKLYEEIDQNVGFSRTPTISDRNRLLLLEATIREVLRLRPVAPMLIPHKANVDSSIGEFAVDKGTEVIINLWALHHNEKEWHQPDQFMPERFLNPAGTQLISPSVSYLPFGAGPRSCIGEILARQELFLIMAWLLQRFDLEVPDDGQLPSLE 477
The following BLAST results are available for this feature:
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