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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027838 ID=TCONS_00027838|Name=TCONS_00027838|organism=Clytia hemisphaerica|type=transcript|length=1566bp
GAAGTAACGATTTCGCCGGTCGCCCAATCAGCGGTAATATACACGTCCAA
ATGATCACAAATAATGGTAAAGGTTTGACGTCTTCTGATTATTCCAAAAA
GTGGTCATTGCTGAGGAAAGTCACATACAAGAGTTTACACTTATACGGGT
CAGGAATGAAAAATATCGAAGAAATCGTAATCGATGAAGTCGAGAAAATG
TGTTCGTTGCTTTCCAAAGAGATTGGACGTCCGACCATCATTGATCAATA
TATAGGAGGCTCACTCATCAGTACCATTCACTACATTTGCTTCAAAAAGA
AATACCACACAAATGATGACGAGTTCCTACACATATTAAAGTACATGAAA
TTAATAAGCGATGGCTTAGCTCCTGGACAGCTAATCTCTATCTTCCCTTG
GCTCCGTTTTTTTCCGGACACTCAACGATTCCGAAAGTTCAAAGAAGGAA
TTACACTTCGACGTGCTTTCATGCATAAAATGTTCGAGGAACATATTGCG
TCTTTTAACCCGGAGAAGATTAGAGATGTGACAGATAATCTTATCGCCTT
CTCGCAAAACAAACAGCTACTGGAGAGTGTGGAAATACAAGATTGGACGC
AGAAAGATATTCTCGAAGCTGTTATACCTTCGTTGTTTTTCGCAGCAGTA
GAAACCTCCCTTACGACCATTCGATGGTGCCTGATTTACTTGATACGAAA
CCCACATGTTCAGACAAAGATATATGAAGAAATTTTACAGAATGTCGGAC
TGAAACGTCAGACTGAAGCTGCAGATGTTGATTCTCTACCTTTTGTTCAA
GCAGTCATGTTAGAAACAAATCGTCGAGCGTCCATTCTACCTATCAATGT
CCCTCATAAAACCTTAGTAGATACATCGGTTGTTGGCAAAACAGTTCCTA
AAGACACACGAGTGTTCTTCAATCTATACAGCATGCATCACGATCCTACA
CACTGGGATGAACCAGGGAAATTCAAACCAGAACGTTGGTTGAATGCTGA
TGGAAGTTTGAAGAAAGAAAAGGCGACACACTATCTTCCTTTTGGAGCTG
GTATTCGTGTTTGTCTTGGAGAGAGAATGGCAAAAATGCAAATGTTTTTG
ATTGTCACACGGTTATtgacgaattttgaaatttcacttGCTCCAGGAGA
AACCTTACCTGGCTCCGAGGATGGCGTTCTTGGAATCACACTTCAACCAC
CACCCTTTAAAATGATTCTGAATACCAGAAAGATTGAATGATACATAACT
CAATTTATATATCTCACTTTTCAATGTACTGTAAACTCTGATACAAAGAT
AATTTtgcatcaattttgatttcgtcagtttgtcaattttatttttctaa
atgaatttatacaaaaataaaacggtaattttGTAATCATTGGATTGAgc
tcaacatgttcttattagTTCAGGAGATGAAGCAGCGCTGTCAAATTCTA
CGAGAAATTTAACTTTTCAGGGCTTTCGGAAATGTTGGATGTCAAATTCG
ACAGCGCTGCGGTCTTCTGCAACATCCCACTTTATCTTATTGATCCCACC
ATGTTATTAATTTATG Run BLAST on NCBI transcript from alignment at sc0000647:165731..169792- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027838 ID=TCONS_00027838|Name=TCONS_00027838|organism=Clytia hemisphaerica|type=transcript|length=4062bp|location=Sequence derived from alignment at sc0000647:165731..169792- (Clytia hemisphaerica)
GAAGTAACGATTTCGCCGGTCGCCCAATCAGCGGTAATATACACGTCCAA
ATGATCACAAATAATGGTAAAGGTTTGACGTCTTCTGATTATTCCAAAAA
GTGGTCATTGCTGAGGAAAGTCACATACAAGAGTTTACACTTATACGGGT
CAGGAATGAAAAATATCGAAGAAATCGTAATCGATGAAGTCGAGAAAATG
TGTTCGTTGCTTTCCAAAGAGATTGGACGTCCGACCATCATTGATCAATA
TATAGGTAATCTTTTACGTTCAAGTTAAAAGAAAGAGACTTTGGTCTATA
ATTTACAACTTTAAGTTTATGCCGCACGTATGGAGGACAATCAACAGCTA
ACAAGCTAACAGCTTAAAACAAGCTTTGATGTCATTGAGCACTCTCGGAA
GATAGAAGAAAATAGATTTATAGGTAATCTTTACTGAGTATCCATAAGGC
TGAAATCAATTTTTTTAACAATGGCCTTTTTGACCTCCTTCTTGACCCTT
AAAGTTACCGATAAGTCGAGATATTCAAAAGTCTCTCTGAAAAACTTCTC
CAGCTATATCACAATGAAAAAGAAAGAAAGACATTTTCTAAGAACAGTTT
GAGAGCACTTGAAGCCTGACAATTAGGTAGAGCCTTGTAACAAAACATCT
TATTCATGATATGCACCATTGCAACGTCTTCTGACATTACATTACGGACC
CAAGAGCTGATTGGGTCCGGCGTGTAAGTGACGTAAAATTGATCAATACG
TCACTTTCAACCAATCAGCTGTTGGGTCCGTGGAAGACATTGCAATGGTG
CATATCATCAATAACCTGTTGATTCTTATTTCAGGAGGCTCACTCATCAG
TACCATTCACTACATTTGCTTCAACAAGAAATACCACACAAATGATGACG
AGTTCCTACACATATTAAAGTACATGAAATTAATAAGCAATGGCTTAGCT
CCTGGATAGCTAATCTCTATCTTCCCCTGGCTCCGTTTTTTTCCGGACAC
TCAACGATTCCGAAAGTTCAAAGAAGGAATTACACTTCGACGTGCTTTCA
TGCATAAAATGTTCGAGGAACATATTGCGTCTTTTAACCCGGAGAAGATT
AGAGATGTGACAGATAATCTAATCGCCTTCTCGCAAAACAAACAGCTACT
GGAGAGTGTGGAAATACAAGATTGGACGCAGAAAGATATTCTCGAAGCTG
TTATACCTTCGTTGTTTTTCGCAGCAGTAGAAACCTCCCTTACCACCATT
CGATGGTGCCTGATTTACTTGATACGAAACCCACATGTTCAGACAAAGAT
ATATGAAGAAATTTTACAGAATGTCGGACTGAAACGTCAGACTGAAGCTG
CAGATGTTGATTCTCTACCTTTTGTTCAAGCAGTCATGTTAGAAACAAAT
CGTCGAGCGTCCATTCTACCTATCAATGTCCCTCATAAAACCTTAGTAGA
TACATCGGTTGTTGGCAAAACAGTTCCTAAAGACACACGAGTGTTCTTCA
ATCTNCCCCCCCCCCCACTTCGATTGAAAATTTTGACCAGTGATGTAAGA
AAATAAGCCGCATTAATATCGGTTCGAGCATCTCTTTGACGGAACATCAA
GAAAGGAGGTCTGAAGATCCAAATGAGAATTTGAAATGAAAATGTCTCCA
ATTTAAGCAAAATGACTATAATAAAACTGATCTTCGTCTAAGAAAATAAT
CATGTCTTGATTTTGGTACTCCCCCTGTTTTGAGGGGCGGTTAACCGGTT
TAAAGGCTTACATGATGATAATGATGAACACTAAAGTCTTATTCAATTCA
TCTCAATAGGAAAGCAGCTGTCCAGGGAGCTGAAACTGTTCATTTGTTGT
TTTTCAGGCATGAAAAGAGTTGTCGTTGTTAACTCGTACCACGGTATAAA
AGAAGCACTGGTGACGAGAAGTAACGATTTCGCCGGTCGCCCAATCAGCG
GTAATATACACGTCCAAATGATCACAAATAATGGTAAAGGTTTGACGTCT
TCTGATTATTCCAAAAAGTGGTCATTGCTGAGGAAAGTCACATACAAGAG
TTTACACTTATACGGGTCAGGAATGAAAAATATCGAAGAAATCGTAATCG
ATGAAGTCGAGAAAATGTGTTCGTTGCTTTCCAAAGAGATTGGACGTCCG
ACCATCATTGATCAATATATAGGTAATCTTTTACGTTCAAGTTAAAAGAA
AGAGACTTTGGTCTATAATTTACAACTTTAAGTTTATGCCGCACGTATGG
AGGACAATCAACAGCTAACAAGCTAACAGCTTAAAACAAGCTTTGATGTC
ATTGAGCACTCTCGGAAGATAGAAGAAAATAGATTTATAGGTAATCTTTA
CTGAGTATCCATAAGGCTGAAATCAATTTTTTTAACAATGGCCTTTTTGA
CCTCCTTCTTGACCCTTAAAGTTACCGATAAGTCGAGATATTCAAAAGTC
TCTCTGAAAAACTTCTCCAGCTATATCACAATGAAAAAGAAAGAAAGACA
TTTTCTAAGAACAGTTTGAGAGCACTTGAAGCCTGACAATTAGGTAGAGC
CTTGTAACAAAACATCTTATTCATGATATGCACCATTGCAACGTCTTCTG
ACATTACATTACGGACCCAAGAGCTGATTGGGTCCGGCGTGTAAGTGACG
TAAAATTGATCAATACGTCACTTTCAACCAATCAGCTGTTGGGTCCGTGG
AAGACATTGCAGTGGTGCATATCATCAATAACCTGTTGATTTTTATTTCA
GGAGGCTCACTCATCAGTACCATTCACTACATTTGCTTCAAAAAGAAATA
CCACACAAATGATGACGAGTTCCTACACATATTAAAGTACATGAAATTAA
TAAGCGATGGCTTAGCTCCTGGACAGCTAATCTCTATCTTCCCTTGGCTC
CGTTTTTTTCCGGACACTCAACGATTCCGAAAGTTCAAAGAAGGAATTAC
ACTTCGACGTGCTTTCATGCATAAAATGTTCGAGGAACATATTGCGTCTT
TTAACCCGGAGAAGATTAGAGATGTGACAGATAATCTTATCGCCTTCTCG
CAAAACAAACAGCTACTGGAGAGTGTGGAAATACAAGATTGGACGCAGAA
AGATATTCTCGAAGCTGTTATACCTTCGTTGTTTTTCGCAGCAGTAGAAA
CCTCCCTTACGACCATTCGATGGTGCCTGATTTACTTGATACGAAACCCA
CATGTTCAGACAAAGATATATGAAGAAATTTTACAGAATGTCGGACTGAA
ACGTCAGACTGAAGCTGCAGATGTTGATTCTCTACCTTTTGTTCAAGCAG
TCATGTTAGAAACAAATCGTCGAGCGTCCATTCTACCTATCAATGTCCCT
CATAAAACCTTAGTAGATACATCGGTTGTTGGCAAAACAGTTCCTAAAGA
CACACGAGTGTTCTTCAATCTATACAGCATGCATCACGATCCTACACACT
GGGATGAACCAGGGAAATTCAAACCAGAACGTTGGTTGAATGCTGATGGA
AGTTTGAAGAAAGAAAAGGCGACACACTATCTTCCTTTTGGAGCTGGTAT
TCGTGTTTGTCTTGGAGAGAGAATGGCAAAAATGCAAATGTTTTTGATTG
TCACACGGTTATTGACGAATTTTGAAATTTCACTTGCTCCAGGAGAAACC
TTACCTGGCTCCGAGGATGGCGTTCTTGGAATCACACTTCAACCACCACC
CTTTAAAATGATTCTGAATACCAGAAAGATTGAATGATACATAACTCAAT
TTATATATCTCACTTTTCAATGTACTGTAAACTCTGATACAAAGATAATT
TTGCATCAATTTTGATTTCGTCAGTTTGTCAATTTTATTTTTCTAAATGA
ATTTATACAAAAATAAAACGGTAATTTTGTAATCATTGGATTGAGCTCAA
CATGTTCTTATTAGTTCAGGAGATGAAGCAGCGCTGTCAAATTCTACGAG
AAATTTAACTTTTCAGGGCTTTCGGAAATGTTGGATGTCAAATTCGACAG
CGCTGCGGTCTTCTGCAACATCCCACTTTATCTTATTGATCCCACCATGT
TATTAATTTATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027838-exon-sc0000647-1575043694:169538..169792 | TCONS_00027838-exon-sc0000647-1575043694:169538..169792 | Clytia hemisphaerica | exon |
| TCONS_00027838-exon-sc0000647-1575043694:165731..167041 | TCONS_00027838-exon-sc0000647-1575043694:165731..167041 | Clytia hemisphaerica | exon |
| TCONS_00027838-exon-sc0000647-1510915933:169538..169792 | TCONS_00027838-exon-sc0000647-1510915933:169538..169792 | Clytia hemisphaerica | exon |
| TCONS_00027838-exon-sc0000647-1510915933:165731..167041 | TCONS_00027838-exon-sc0000647-1510915933:165731..167041 | Clytia hemisphaerica | exon |
| TCONS_00027838-exon-sc0000647-1491911889:169538..169792 | TCONS_00027838-exon-sc0000647-1491911889:169538..169792 | Clytia hemisphaerica | exon |
| TCONS_00027838-exon-sc0000647-1491911889:165731..167041 | TCONS_00027838-exon-sc0000647-1491911889:165731..167041 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000647 | supercontig | sc0000647:165731..169792 - |
Blast
BLAST of TCONS_00027838 vs. Swiss-Prot (Human)
Match: CP17A (Steroid 17-alpha-hydroxylase/17,20 lyase OS=Homo sapiens GN=CYP17A1 PE=1 SV=1) HSP 1 Score: 234.572 bits (597), Expect = 1.301e-69 Identity = 130/411 (31.63%), Postives = 215/411 (52.31%), Query Frame = 3
Query: 9 DFAGRPISGNIHVQMITNNGKGLTSSDYSKKWSLLRKVTYKSLHLYGSGMKNIEEIVIDEVEKMCSLLSKEIGRPTIIDQYIGGSLISTIHYICFKKKYHTNDDEFLHILKYMKLISDGLAPGQLISIFPWLRFFPDTQRFRKFKEGITLRRAFMHKMFEEHIASFNPEKIRDVTDNLIAFSQNKQLLESVEIQD---WTQKDILEAVIPSLFFAAVETSLTTIRWCLIYLIRNPHVQTKIYEEILQNVGLKRQTEAADVDSLPFVQAVMLETNRRASILPINVPHKTLVDTSVVGKTVPKDTRVFFNLYSMHHDPTHWDEPGKFKPERWLNADGSLKKEKATHYLPFGAGIRVCLGERMAKMQMFLIVTRLLTNFEISLAPGETLPGSEDGVLGITLQPPPFKMILNTRK 1232
DF+GRP + + +NN KG+ +D W L R++ + L+ G + +E+I+ E+ +C +L+ G+ I + ++ + I ICF Y D E I Y + I D L+ L+ + PWL+ FP+ + K K + +R ++K+ E + F + I ++ D L+ N + QD + IL I +F A VET+ + ++W L +L+ NP V+ K+YEEI QNVG R +D + L ++A + E R + P+ +PHK VD+S+ V K T V NL+++HH+ W +P +F PER+LN G+ + YLPFGAG R C+GE +A+ ++FLI+ LL F++ + LP S +G+ + FK+ + R+
Sbjct: 92 DFSGRPQMATLDIA--SNNRKGIAFADSGAHWQLHRRLAMATFALFKDGDQKLEKIICQEISTLCDMLATHNGQSIDISFPVFVAVTNVISLICFNTSYKNGDPELNVIQNYNEGIIDNLSKDSLVDLVPWLKIFPN-KTLEKLKSHVKIRNDLLNKILENYKEKFRSDSITNMLDTLMQAKMNSDNGNAGPDQDSELLSDNHIL-TTIGDIFGAGVETTTSVVKWTLAFLLHNPQVKKKLYEEIDQNVGFSRTPTISDRNRLLLLEATIREVLRLRPVAPMLIPHKANVDSSIGEFAVDKGTEVIINLWALHHNEKEWHQPDQFMPERFLNPAGTQLISPSVSYLPFGAGPRSCIGEILARQELFLIMAWLLQRFDLEVPDDGQLP-SLEGIPKVVFLIDSFKVKIKVRQ 497
The following BLAST results are available for this feature:
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