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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027827 ID=TCONS_00027827|Name=TCONS_00027827|organism=Clytia hemisphaerica|type=transcript|length=4238bpRun BLAST on NCBI protein sequence of TCONS_00027827-protein >TCONS_00027827-protein ID=TCONS_00027827-protein|Name=TCONS_00027827-protein|organism=Clytia hemisphaerica|type=polypeptide|length=632bp WLQKAHLERLYKKTRKLENIRIYSNIKTMNYSHDDDDEDDEYSYGGGGTTRun BLAST on NCBI transcript from alignment at sc0000647:108927..211680+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00027827 ID=TCONS_00027827|Name=TCONS_00027827|organism=Clytia hemisphaerica|type=transcript|length=102754bp|location=Sequence derived from alignment at sc0000647:108927..211680+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000647:108927..211680+ >TCONS_00027827 ID=TCONS_00027827|Name=TCONS_00027827|organism=Clytia hemisphaerica|type=CDS|length=32283bp|location=Sequence derived from alignment at sc0000647:108927..211680+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00027827 vs. Swiss-Prot (Human)
Match: NELFD (Negative elongation factor C/D OS=Homo sapiens GN=NELFCD PE=1 SV=2) HSP 1 Score: 543.888 bits (1400), Expect = 4.289e-177 Identity = 248/555 (44.68%), Postives = 386/555 (69.55%), Query Frame = 1
Query: 241 EYQDNQTIIEECKEVFKGKDFIMETAAITKVQKFLKAEGKAEDFVALLAENYHGVAQLANLLADWLIVAGCSVEEVQEIVERHLKDLIIKNFDPKKADSIFTGSGQPPGWIEEMITHPPWRIMFYELSDKYPDCLMLNYTIKMISDAGYQTEMGTMSSAFNQIDVFSKFMKTFILNFYTQPSSEIKN---DFIKSVCHGKHTYLYAQCMLNEISMLLEQQGLSNACLNWMSQEISTRASKLGHDIWPLVLLGMGAGKHPRVYLALMSLVEKKSLNPGDITVLYKAYSVADPPPAKYLRIPAFLDLLVNALFQPGSTISADHKPKYLFLMAYAVSAYEQWEEGIRESVFTEEVKQTLKAIEVVHRICSNDVGSSTMQLTADFSLIYQCIRYPIISVGIIHWIKYCFSDTHYHKVITDSSPFQVVLLDEINSSHPLLHSRVLELLKELFERNYPQLDTLIEIEFKKTLIDRMIHMLSRGYILPVVSYIKDCMDKQLSDVSLLRHFVVEVLEMIAPPYSPDFISLMLPIVKNKEITDTLRTSSGEDDVSQFLSRCENG 1896
E +D+ + +EC F +D+IME + ++++ +A G E+ + LL+ENY VAQ NLLA+WLI G +VQE VE HLK L+IK+FDP+KADSIFT G+ P W+E+MI H WR +FY+L++ +PDCLMLN+T+K+ISDAGYQ E+ ++S+A Q++VFS+ ++T + ++ +F K VCHG+HTYL+AQ M++ ++ E+QG + + ++QE+ A + GHD + L A +PR AL +++ K +LNP DITVL+K ++ DPPP + +R+PAFLDL + +LF+PG+ I+ DHK KY+ ++AYA S E W++ R S+ +E+K T KA+E VH +C N+ ++ +L A+ S +YQCIR+P++++G++ W+ + S+ Y ++ TD +P + LLDEI++ H LLH +VL+LL +LFE + QLD + ++E KKTL+DRM+H+LSRGY+LPVVSYI+ C++K +D+SL+R+FV EVL++IAPPY+ DF+ L LPI++N I T++T D V++F++ C++
Sbjct: 36 EGEDDAEVQQECLHKFSTRDYIMEPSIFNTLKRYFQAGGSPENVIQLLSENYTAVAQTVNLLAEWLIQTGVEPVQVQETVENHLKSLLIKHFDPRKADSIFTEEGETPAWLEQMIAHTTWRDLFYKLAEAHPDCLMLNFTVKLISDAGYQGEITSVSTACQQLEVFSRVLRTSLATILDGGEENLEKNLPEFAKMVCHGEHTYLFAQAMMSVLAQ--EEQG--GSAVRRIAQEVQRFAQEKGHDASQITLALGTAASYPRACQALGAMLSKGALNPADITVLFKMFTSMDPPPVELIRVPAFLDLFMQSLFKPGARINQDHKHKYIHILAYAASVVETWKKNKRVSINKDELKSTSKAVETVHNLCCNENKGAS-ELVAELSTLYQCIRFPVVAMGVLKWVDWTVSEPRYFQLQTDHTPVHLALLDEISTCHQLLHPQVLQLLVKLFETEHSQLDVMEQLELKKTLLDRMVHLLSRGYVLPVVSYIRKCLEKLDTDISLIRYFVTEVLDVIAPPYTSDFVQLFLPILENDSIAGTIKTEGEHDPVTEFIAHCKSN 585 The following BLAST results are available for this feature:
BLAST of TCONS_00027827 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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