TCONS_00027827-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00027827-protein
Unique Name	TCONS_00027827-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	632

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00027827-protein ID=TCONS_00027827-protein|Name=TCONS_00027827-protein|organism=Clytia hemisphaerica|type=polypeptide|length=632bp
WLQKAHLERLYKKTRKLENIRIYSNIKTMNYSHDDDDEDDEYSYGGGGTT
HHDFSFTGKWGEEDEEDDENDHEMNKNDDLEYQDNQTIIEECKEVFKGKD
FIMETAAITKVQKFLKAEGKAEDFVALLAENYHGVAQLANLLADWLIVAG
CSVEEVQEIVERHLKDLIIKNFDPKKADSIFTGSGQPPGWIEEMITHPPW
RIMFYELSDKYPDCLMLNYTIKMISDAGYQTEMGTMSSAFNQIDVFSKFM
KTFILNFYTQPSSEIKNDFIKSVCHGKHTYLYAQCMLNEISMLLEQQGLS
NACLNWMSQEISTRASKLGHDIWPLVLLGMGAGKHPRVYLALMSLVEKKS
LNPGDITVLYKAYSVADPPPAKYLRIPAFLDLLVNALFQPGSTISADHKP
KYLFLMAYAVSAYEQWEEGIRESVFTEEVKQTLKAIEVVHRICSNDVGSS
TMQLTADFSLIYQCIRYPIISVGIIHWIKYCFSDTHYHKVITDSSPFQVV
LLDEINSSHPLLHSRVLELLKELFERNYPQLDTLIEIEFKKTLIDRMIHM
LSRGYILPVVSYIKDCMDKQLSDVSLLRHFVVEVLEMIAPPYSPDFISLM
LPIVKNKEITDTLRTSSGEDDVSQFLSRCENG

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_015723	XLOC_015723	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00027827	TCONS_00027827	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011989	ARM-like
IPR006942	TH1

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **Biological Process**
Term	Definition
GO:0045892	negative regulation of transcription, DNA-templated

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045892	negative regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011989	Armadillo-like helical	GENE3D	1.25.10.10		coord: 126..625 e-value: 1.2E-4 score: 19.3
IPR006942	TH1 protein	PFAM	PF04858	TH1	coord: 59..630 e-value: 2.1E-196 score: 653.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..82

Blast

[Close]

BLAST of TCONS_00027827-protein vs. Swiss-Prot (Human)
Match: NELFD (Negative elongation factor C/D OS=Homo sapiens GN=NELFCD PE=1 SV=2)

HSP 1 Score: 552.362 bits (1422), Expect = 0.000e+0
Identity = 254/575 (44.17%), Postives = 395/575 (68.70%), Query Frame = 0

Query:   60 WGEEDEEDDENDHEMNKNDDLEYQDNQTIIEECKEVFKGKDFIMETAAITKVQKFLKAEGKAEDFVALLAENYHGVAQLANLLADWLIVAGCSVEEVQEIVERHLKDLIIKNFDPKKADSIFTGSGQPPGWIEEMITHPPWRIMFYELSDKYPDCLMLNYTIKMISDAGYQTEMGTMSSAFNQIDVFSKFMKTFILNFYTQPSSEIKND---FIKSVCHGKHTYLYAQCMLNEISMLLEQQGLSNACLNWMSQEISTRASKLGHDIWPLVLLGMGAGKHPRVYLALMSLVEKKSLNPGDITVLYKAYSVADPPPAKYLRIPAFLDLLVNALFQPGSTISADHKPKYLFLMAYAVSAYEQWEEGIRESVFTEEVKQTLKAIEVVHRICSNDVGSSTMQLTADFSLIYQCIRYPIISVGIIHWIKYCFSDTHYHKVITDSSPFQVVLLDEINSSHPLLHSRVLELLKELFERNYPQLDTLIEIEFKKTLIDRMIHMLSRGYILPVVSYIKDCMDKQLSDVSLLRHFVVEVLEMIAPPYSPDFISLMLPIVKNKEITDTLRTSSGEDDVSQFLSRCEN 631
            +G   E  DE D    ++D  E +D+  + +EC   F  +D+IME +    ++++ +A G  E+ + LL+ENY  VAQ  NLLA+WLI  G    +VQE VE HLK L+IK+FDP+KADSIFT  G+ P W+E+MI H  WR +FY+L++ +PDCLMLN+T+K+ISDAGYQ E+ ++S+A  Q++VFS+ ++T +          ++ +   F K VCHG+HTYL+AQ M++ ++   E+QG   + +  ++QE+   A + GHD   + L    A  +PR   AL +++ K +LNP DITVL+K ++  DPPP + +R+PAFLDL + +LF+PG+ I+ DHK KY+ ++AYA S  E W++  R S+  +E+K T KA+E VH +C N+   ++ +L A+ S +YQCIR+P++++G++ W+ +  S+  Y ++ TD +P  + LLDEI++ H LLH +VL+LL +LFE  + QLD + ++E KKTL+DRM+H+LSRGY+LPVVSYI+ C++K  +D+SL+R+FV EVL++IAPPY+ DF+ L LPI++N  I  T++T    D V++F++ C++
Sbjct:   15 YGSAAEWGDEADGGQQEDDSGEGEDDAEVQQECLHKFSTRDYIMEPSIFNTLKRYFQAGGSPENVIQLLSENYTAVAQTVNLLAEWLIQTGVEPVQVQETVENHLKSLLIKHFDPRKADSIFTEEGETPAWLEQMIAHTTWRDLFYKLAEAHPDCLMLNFTVKLISDAGYQGEITSVSTACQQLEVFSRVLRTSLATILDGGEENLEKNLPEFAKMVCHGEHTYLFAQAMMSVLAQ--EEQG--GSAVRRIAQEVQRFAQEKGHDASQITLALGTAASYPRACQALGAMLSKGALNPADITVLFKMFTSMDPPPVELIRVPAFLDLFMQSLFKPGARINQDHKHKYIHILAYAASVVETWKKNKRVSINKDELKSTSKAVETVHNLCCNENKGAS-ELVAELSTLYQCIRFPVVAMGVLKWVDWTVSEPRYFQLQTDHTPVHLALLDEISTCHQLLHPQVLQLLVKLFETEHSQLDVMEQLELKKTLLDRMVHLLSRGYVLPVVSYIRKCLEKLDTDISLIRYFVTEVLDVIAPPYTSDFVQLFLPILENDSIAGTIKTEGEHDPVTEFIAHCKS 584

The following BLAST results are available for this feature:

BLAST of TCONS_00027827-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00027827-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
NELFD	0.000e+0	44.17	Negative elongation factor C/D OS=Homo sapiens GN=...	[more]

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TCONS_00027827-protein (polypeptide) - C. hemisphaerica