TCONS_00027821 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027821
Unique NameTCONS_00027821
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length393

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027821 ID=TCONS_00027821|Name=TCONS_00027821|organism=Clytia hemisphaerica|type=transcript|length=393bp
aggaagcaaaaattcccgagttaaaaattcaaaaataactcggaaagcta
aaggaagaaaaaattcccgagttaaaaaatgaaaaataactcggaaagNN
NNNNNNNNGAGTCGATAATTTACTTGGAAGAGTATTTTTATCGTAGTAGT
GGAGATGTTTGTATACTTGGACCATATCACAAAAGAGTCTCCTGAATTCA
AGCGTGGAGAGGTCAAGTATGCGCAAGCGTTCTTCATAGGACATATCTTT
GCAGATAGGCACGAGTTTTGTGGCGCGTCTTTGTACACCCTCTatcaaat
taacatattttcgAAGTTTAGGTGACCATACCGACTGAGCATACTCCAAG
TGCGGACGGACAAACGAAGTATATAGTACTAGGAAGATGGATG
Run BLAST on NCBI

protein sequence of TCONS_00027821-protein

>TCONS_00027821-protein ID=TCONS_00027821-protein|Name=TCONS_00027821-protein|organism=Clytia hemisphaerica|type=polypeptide|length=120bp
SIFLVLYTSFVRPHLEYAQSVWSPKLRKYVNLIEGVQRRATKLVPICKDM
SYEERLRILDLSTLEFRRLFCDMVQVYKHLHYYDKNTLPSKLSTXXXXFP
SYFSFFNSGIFSSFSFPSYF
Run BLAST on NCBI

transcript from alignment at sc0000646:45093..45485

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027821 ID=TCONS_00027821|Name=TCONS_00027821|organism=Clytia hemisphaerica|type=transcript|length=393bp|location=Sequence derived from alignment at sc0000646:45093..45485 (Clytia hemisphaerica)
CATCCATCTTCCTAGTACTATATACTTCGTTTGTCCGTCCGCACTTGGAG
TATGCTCAGTCGGTATGGTCACCTAAACTTcgaaaatatgttaatttgat
AGAGGGTGTACAAAGACGCGCCACAAAACTCGTGCCTATCTGCAAAGATA
TGTCCTATGAAGAACGCTTGCGCATACTTGACCTCTCCACGCTTGAATTC
AGGAGACTCTTTTGTGATATGGTCCAAGTATACAAACATCTCCACTACTA
CGATAAAAATACTCTTCCAAGTAAATTATCGACTCNNNNNNNNNNctttc
cgagttatttttcattttttaactcgggaattttttcttcctttagcttt
ccgagttatttttgaatttttaactcgggaatttttgcttcct

Coding sequence (CDS) from alignment at sc0000646:45093..45485

>TCONS_00027821 ID=TCONS_00027821|Name=TCONS_00027821|organism=Clytia hemisphaerica|type=CDS|length=363bp|location=Sequence derived from alignment at sc0000646:45093..45485 (Clytia hemisphaerica)
TCCATCTTCCTAGTACTATATACTTCGTTTGTCCGTCCGCACTTGGAGTA
TGCTCAGTCGGTATGGTCACCTAAACTTcgaaaatatgttaatttgatAG
AGGGTGTACAAAGACGCGCCACAAAACTCGTGCCTATCTGCAAAGATATG
TCCTATGAAGAACGCTTGCGCATACTTGACCTCTCCACGCTTGAATTCAG
GAGACTCTTTTGTGATATGGTCCAAGTATACAAACATCTCCACTACTACG
ATAAAAATACTCTTCCAAGTAAATTATCGACTCNNNNNNNNNNctttccg
agttatttttcattttttaactcgggaattttttcttcctttagctttcc
gagttatttttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015718XLOC_015718Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027821-proteinTCONS_00027821-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027821-exon-sc0000646-1491911889:45093..45485TCONS_00027821-exon-sc0000646-1491911889:45093..45485Clytia hemisphaericaexon
TCONS_00027821-exon-sc0000646-1510915933:45093..45485TCONS_00027821-exon-sc0000646-1510915933:45093..45485Clytia hemisphaericaexon
TCONS_00027821-exon-sc0000646-1575043694:45093..45485TCONS_00027821-exon-sc0000646-1575043694:45093..45485Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000646supercontigsc0000646:45093..45485 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.33236	6.34349	15.2318	12.9182	2.40988	2.99015	3.62399	5.19865	3.28449	2.20943	2.56424	3.73831	3.21869	3.37153	2.80702	2.98691	2.71966	2.05202	1.63972	3.64006	2.69253	5.55294	1.6667	2.78522	1.96741	3.62452	4.81465	9.87442	4.49509	2.80551
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027821 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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