TCONS_00027813 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027813
Unique NameTCONS_00027813
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length539

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027813 ID=TCONS_00027813|Name=TCONS_00027813|organism=Clytia hemisphaerica|type=transcript|length=539bp
ATCGACTATTCTCTTGACTTTCTGAACACAAGCAGCAAGTAGTTGTCGTT
TTAAAGAAAGCTTGAAAGAATTCCTTGATGAGAATACGAAAGCGGACAGC
AACCACTTCGAGCGTGGATACAGATGATGTGTCGTATGATCTGTTCATAG
CGACCACCATGGTGGTGCCGTCGAAAGGACCAGCCTACATCTTACTAAAA
GACACAGTTGGCCTTAAAAGAGCCAAACGTCGTATCGGTGTACGATTTGG
TTCGCAAACCATCTTCACTGCGCATGCAGGAGCCATCTACCTTGCCAACA
AAGATGATAAACAACCTCAAGACAAAACCATGATTTCCTTGGTCTCGCTC
ACCGACACAAAACGTATTTTGGTCACAGCAAAGGAGAACACACGCATGTT
GACCACGGCTGAGCTGAATATGATGCTTCCAATCACGTCTGACCAAAGAC
gcgcaaaaattttatcaactTCAGTCTTTATGGAAGCGATTACGGCGCAA
ATTGATGACGTTGTTGCTGTCAACGATGGTGAACATCAN
Run BLAST on NCBI

protein sequence of TCONS_00027813-protein

>TCONS_00027813-protein ID=TCONS_00027813-protein|Name=TCONS_00027813-protein|organism=Clytia hemisphaerica|type=polypeptide|length=154bp
MRIRKRTATTSSVDTDDVSYDLFIATTMVVPSKGPAYILLKDTVGLKRAK
RRIGVRFGSQTIFTAHAGAIYLANKDDKQPQDKTMISLVSLTDTKRILVT
AKENTRMLTTAELNMMLPITSDQRRAKILSTSVFMEAITAQIDDVVAVND
GEHX
Run BLAST on NCBI

transcript from alignment at sc0000646:162233..168197-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027813 ID=TCONS_00027813|Name=TCONS_00027813|organism=Clytia hemisphaerica|type=transcript|length=5965bp|location=Sequence derived from alignment at sc0000646:162233..168197- (Clytia hemisphaerica)
ATCGACTATTCTCTTGACTTTCTGAACACAAGCAGCAAGTAGTTGTCGTT
TTAAAGAAAGCTTGAAAGAATTCCTTGATGAGAATACGAAAGCGGACAGC
AACCACTTCGAGCGTGGATACAGATGATGTGTCGTATGATCTGTTCATAG
GTAATGACTTATACTCATTCTCGAATGTCATCAAAAAAGAGTTAAGCATC
TTAAAATTCTATTTAAGCTGGCTTAATTAACATTATTTCCTGTTTAAAAT
AGAGATAAAGGGTTCATTTTTTACGATATACCATGCCTGTCTGTGGTAAT
TACGAGAGTCGTTGTTAAATGGGAGTAGCAGAATCAAGACACATCCTGGA
ATTTTTTTGCTACCCTACTTAACAGGGAATTCAGATCTGAGAAAAAGCAA
ATTTACCCCAATGAAATTCTTGTGATAGGACTGCATATCTGATCTATAAT
TTTCAAAAAAATTGGGATGAAAAGTTGGTCAAAAGCCACCATTTTCAGGA
TTTTGAGACAAAGAAGCTTTTCCAAAATGTTCCGAAATTCTATTGTTACA
GTAGTTTGGTTAAAAATACACCATCTAGTGCAAAGAAAAATTCTAAATCT
TTTTTCTTCTCCGAAAATAAGCTCCTCAAAGGTGAAATACTTATCTTCGC
AAAAGTCTTCATTTTCTTTATAAACAATTTTTTTCGTTGCAATTTTTAAA
TTTTCAGATTCAGAAATACACCTTTTCGACCGTAGCCGCCATATACTTCA
CGGGCAATTTTTCTGCTTTATCCCACTAAAACCGTCCCAGTCCTTTTTGT
CGCACCTAACCAATAGAAAAATGTTTCAAAAAAGGATTGAGTTGAGTAGG
GGGTGATTAAATAATTAAGTGGTACACGTCTGACCGCGCGACTACGGTCG
AAAAGGTGTATAGTTTGCCTAACAGTTTTGTTGGTTACATCAGCCAGAAA
ATACACGACAATTATAAAAAATTCACAATGGTCAGAGCCCTTAACCTTAT
CTGCCTGTTTGTTCAGCGGTAGCGGCAAAACTGCTAAAATCTCAAAATCA
TAAAATGGCCTGCTTAAAAGATTTCCCTGCAACTATCTATACCAAGTGGT
CTGTTTTTCAGGACAGGCAAATAGCCGATTTCAAATTTTTTGCCGCCATT
TTGAAAAATTTTGAGTATGGAGGGAATGTATTTTAGCCAATCATGATTCT
TAAATATTTATCTCAATTTTATAAATTTTCACGTTTTTTTTCTTCAAAAA
TTTACCTAACAGTGACCCTTTTTGGATCCCATTTTGTCAAAAAAAATTCC
CTGGTGGGGTTAGGTAAGGTGGCCAACCCCCCAGAAAAATTGAGCAAAAA
GGTCAAAGCTTTCCCGATAGAATGTGAAGGTACCTGCAGTTTTTGCGACT
TTTTCTGGCTACCTTTGCCCTTTTCAAGGCCTCCTTTAAGCTTTTTGACA
TTAGACCAAAATTAGAAGAAAGCTTTCTGTGACATGAAATTCCGTGCCTT
CTGTACTTTTTGTGAGCTTATTCTCTCTAACCTTGACCTAGCCTGGGAAT
CCAAGCGTTAAACTTTATTCACAGTTTATGATATTTTTGTTGCTTGTTTA
ACGCTTGGCGCAGGTAACTCGCCTGCAGGGAGATTTTTCCCTGCAATGCA
GGTTCGGCCTGGTTGGCCAGCTTTCGGCGTATTATCTAGCAGTATTTTCG
CGCGCATTTTGATGATTTCGATGTGCGCGCATAATTTATGGAAAAAGCTG
ACTCTGCAGAAAAAAGGAAAACAAATGAAAATGAAAACTATATTTATTTC
GAAACAAAATGGCTGTTGGCTGGAAGTCTAACTTCATGTGGCTGATGTTT
TGATGTGGTTTTTAGTATTTTTGAAAGTCTTTAAGAGCTTGTAAAAGATT
TTTTATGGTAAGTTAATTATGTGAGTTGGCCTGGATTTCAAAGTTTAGAA
AGTCTGTCAACAAGGGTTCACACACAGACTGTTTATAACATTCTGTGTCA
GACTAATCTACCTGCACCAAGCTCTATAATCTTAGAACTTAGTGAGGTGA
GGTATTTTTTGTTTTTTCTAAGATTATGAGCTTGGATTCCCAGGCTAACC
TTGACCTTCTCAAGCTCTTATTTAAGCTATTTGAGCTTGCTTAGAGCAAA
ACTTTTTTTTCAAGCTGGCCTCTGGCAGCTGCTATAATTGTAGCTTTTCA
AATCGTTTTGAGAGGTCAAAGAAGACCATTTATAGGTGGCCTATATTAGG
AGGGGTACCAAAAATATATTGACTGGTTAGAGGGGGACTTGAAATTCTTT
TGAGGATATCAAGGGGTGTGCGAATCTTTTTTGGAATCGTTGAAAATATC
CTCCACCCCAGATACTTTCTAACACTCCCTAAATTGGAAATTTTTCAATT
TCTTTTCTGACAGGGTACCAAATTCACCAAATATTCATATCTGACAGGGT
CCATTTTTCAAACATCAGCGGTACGTCCCCGTGACTGATCAATTGGCCAA
ATAATTGCTTTTCTCATAAAGAATTTTTTACGTCAATTCAATTTCTGACC
TGGAAAGCATGCATAAATGAATTGGGTTTTCCATAAACTGCACTCATCTT
TTTCAGTAGAATTTTAGGTACTAACTTACAAAAAGTTCTTTATTGGCGCT
AGGATTACCGGAAACGACTTGCAAAAATGTCACCTTAAAATTATCCGAAA
TGGTCTTCTTTCGGCCTTATTTCCTGCCATCAGTTGCCCATCAAAAACAT
ATTGAACGACCACGAATACATTTTCAAAACCGTCATTTCACTCAATTTTC
TTGATAGAAATAAGAAGAAATCGTTAAATCGCTTTCTCTCCTCTTCAGCA
AACGTACTACGCAGGAGAACCATCTCAACCAAATCATAATAGTCGTTTGA
GTCTCCCAACGAAATACTCTTCCTTGGTCTGCCTTTAGAATTGTGCCACA
TTTCAGAATACGGATTGAATTTTGTGAAAATGTGTCTGTATGAAAATGAG
CTAAAACCTTTTCTTTCTTGAAGTGTTTTTTTCTCAATTTCGATTTATTT
TAAATTCAAACTTCTCCCATTTCTGAGCTTAAAACAGTTTGAATTTCTAT
TACAGTAAGTAGTGCAGTGAAAGAGGTTTGACCTTAATTACAACCTGGAG
CGGATTTTCTGCGGTTCTCCACAAATTTTGCGAAAATATTTTTGCATAAT
ACTTTTTAAAGAGGGGTTATATAATGTAAATCTGTGGTAATCTACGTCAG
CCGATAATTATCTTGAATAAAGCCAATCAAGTCAAAGCAAACAAAACTGA
TAAAAATTAGCTTTGATTTGAGAACTAATATATTTGATTTGTCTGCGATT
TAATTTCTAAAAATAGATGTAAACTTCCCCAATATCAAAATTATTCTTCT
GCTTTAAATTGCTTTATTTCAAAGGAAGAACATATCCATCGGTAAACTAA
AAAAAAAATTACCAAAAATCTTGGCATTCGCAGTTAAACTTTAGACCGGC
ATAACATTCGAAAGCAGCTGACGAGGCGACCTTTTTTTCGGATGTGTTCT
GAGAGTAGTTTAAGTTAGATTTTTTATTTGTTCTGATCATCAGAGTTTAG
AAAATTAATCAGCTGGAAAATAATTATGTGTTCTGACGAGACAGGCGTAT
AGTTAACGTCATCTAACGTGTTCTCGTTGTCTAGGTAACCCTAGAAAGCT
CAATACCCATCTTTCAAGTACAGGGGCATAATCTAAAGAATCTTAAGATT
CGTTTATAATCTACAACTGACTCTCGTTTTCCCTCCCGAACTCGAACGGA
GAATTAAATTATATTATTATATTATAGAAATTATTGACAGGCACTGAAAA
ATAGTTCGAAAGTCTGCTGTAATGAAAAGTATTAAACGTAAAGTCTTATA
AGAAATTCCAAGGAAATTAGTACTTAGCTCTCAGAATCTTTTGTGTCTAT
ATTTTTAATTCTTTGCCTGGTCCATCATTTTGATGCAGATTTCCTGCAAA
CTGCTGCGCAATATTCTCGGTGTTTTTAACTGATCAACTGGACGAGTGTA
ATCGAATATATTAATTGTGAGGAATACTTAAATTAAGTTGTCAGGGAATC
TCGGGGAAAATTCATTCCAGTGCCTGGCAGAAAAGGATTACAACCAATAA
TTTCCTGTAANGTAATCGAATATATTAATTGTGAGGAATACTTAAATTAA
GTTGTCAGGGAATCTCGGGGAAAATTCATTCCAGTGCCTGGCAGAAAAGG
ATTGCAACCAATAATTTCCTGTAATTTAATTCCCCGGGGGGGGGCACTCA
AGGTAAATGACCTACCAGACGTTCGGCCCTTAAGGGTAGGTTTTTCATAG
TTTANTTTAATTCTCAAGAAAGCTTCCAAGAAGCCCGACAAATATTCTCA
AAAAGACCATTACTGAGCAAGTGAAAATCAAGGGATTAGAGAAGTAAAAA
AAGATAATAAGAGTCGAATACCCAATCTATGCTCTTAAAATAAGAACATA
ATAAGAACCATTGGAGCCAAATGATCTTAAAAAAAATAAACGACCAAGCG
TCAAAAAAGATTTTTTGTTTTTATAGAAAAAGTGAATATACAGTTATTTA
AGTTTCAGATTAGACATCAGAAGGTTTTTTTTAAATGACAAACTGGATCA
TACAAGGAAATTGTTCCACTGTGCTTTTTTAATTGTAGACTGTATTTTCT
TATACGTAGATTTTCAATGATAGAGCTGCCAATTTTCATAAATGAACGCC
AAAAGAATTAGTGTGGCAATTTCCGCCTGTTAATGGAATAGTATTAGAGT
TTGCTAATTAGTTCATTTTTATCATGAAGAGAAAATCAATTTTTATCATT
AGCTAATTCATATTGTTACTTACTAGTAGGCCATAATGTGTTGACTTTAT
CAAGCGAAATCTACTTGTTATACTTAAAAAAGGTGTTTGTTTAGCATTAC
GGAGAATCAAAGTCACGAAATGGGTTTAGAAGAACTCGATTTAGGTAATA
AATTAATAAATTATTTTTAACTCGGTTAAAACAATCTCCACTGTTTCGGT
TGTTTACGAAACTGTTTTTTTTTGTATTCAAAGCTCATTGTAACAAGATG
GTGATGTCGAGTGTGGAGTATTTCTTGCACTGAAGTGTTGAAATTGAGAG
TACTGGAGTTTCGTTAGAAGTTTTTTTTAAGATTAAGGTCAATGCTATGT
TCAGAATAGTTTGTCAATTCATGGTTCTAGATTCGCATGATGGGAATTAT
CGTGGGTTTGTGAGCTGTGTGATCTGGAAAGAAAGATTCTTTCAAATTTA
TCTCTATGGCTATTCTTATTGCTTTGTACTTTGTACATTTTCGAAATTGA
TGATTTTCTATTCTCAATAGACGAGCGGGCGAGGTAGTGAATTGTGTCAC
TTCGTAGGGCACCCCTTAGATTAGGGCAAATTTTTGATATTATGCCCCTA
AAAGTTCTAAGGGGCGTCCTACGAAAACCATTTTTAAGGCCTTTTCTGAA
TCACGGACGCTGGTCTACAAATTGATAAGAGCTTTTTGTCTACAATTTAA
TGAAACACATCTTCATTGTATTTCAGCGACCACCATGGTGGTGCCGTCGA
AAGGACCAGCCTACATCTTACTAAAAGACACAGTTGGCCTTAAAAGAGCC
AAACGTCGTATCGGTGTACGATTTGGTTCGCAAACCATCTTCACTGCGCA
TGCAGGAGCCATCTACCTTGCCAACAAAGATGATAAACAACCTCAAGACA
AAACCATGATTTCCTTGGTCTCGCTCACCGACACAAAACGTATTTTGGTC
ACAGCAAAGGAGAACACACGCATGTTGACCACGGCTGAGCTGAATATGAT
GCTTCCAATCACGTCTGACCAAAGACGCGCAAAAATTTTATCAACTTCAG
TCTTTATGGAAGCGATTACGGCGCAAATTGATGACGTTGTTGCTGTCAAC
GATGGTGAACATCAN

Coding sequence (CDS) from alignment at sc0000646:162233..168197-

>TCONS_00027813 ID=TCONS_00027813|Name=TCONS_00027813|organism=Clytia hemisphaerica|type=CDS|length=924bp|location=Sequence derived from alignment at sc0000646:162233..168197- (Clytia hemisphaerica)
CGACCACCATGGTGGTGCCGTCGAAAGGACCAGCCTACATCTTACTAAAA
GACACAGTTGGCCTTAAAAGAGCCAAACGTCGTATCGGTGTACGATTTGG
TTCGCAAACCATCTTCACTGCGCATGCAGGAGCCATCTACCTTGCCAACA
AAGATGATAAACAACCTCAAGACAAAACCATGATTTCCTTGGTCTCGCTC
ACCGACACAAAACGTATTTTGGTCACAGCAAAGGAGAACACACGCATGTT
GACCACGGCTGAGCTGAATATGATGCTTCCAATCACGTCTGACCAAAGAC
GCGCAAAAATTTTATCAACTTCAGTCTTTATGGAAGCGATTACGGCGCAA
ATTGATGACGTTGTTGCTGTCAACGATGGTGAACATCANATGAGAATACG
AAAGCGGACAGCAACCACTTCGAGCGTGGATACAGATGATGTGTCGTATG
ATCTGTTCATAGCGACCACCATGGTGGTGCCGTCGAAAGGACCAGCCTAC
ATCTTACTAAAAGACACAGTTGGCCTTAAAAGAGCCAAACGTCGTATCGG
TGTACGATTTGGTTCGCAAACCATCTTCACTGCGCATGCAGGAGCCATCT
ACCTTGCCAACAAAGATGATAAACAACCTCAAGACAAAACCATGATTTCC
TTGGTCTCGCTCACCGACACAAAACGTATTTTGGTCACAGCAAAGGAGAA
CACACGCATGTTGACCACGGCTGAGCTGAATATGATGCTTCCAATCACGT
CTGACCAAAGACGCGCAAAAATTTTATCAACTTCAGTCTTTATGGAAGCG
ATTACGGCGCAAATTGATGACGTTGTTGCTGTCAACGATGGTGAACATCA
NATGAGAATACGAAAGCGGACAGCAACCACTTCGAGCGTGGATACAGATG
ATGTGTCGTATGATCTGTTCATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015711XLOC_015711Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027813-proteinTCONS_00027813-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027813-exon-sc0000646-1575043694:168048..168197TCONS_00027813-exon-sc0000646-1575043694:168048..168197Clytia hemisphaericaexon
TCONS_00027813-exon-sc0000646-1575043694:162233..162621TCONS_00027813-exon-sc0000646-1575043694:162233..162621Clytia hemisphaericaexon
TCONS_00027813-exon-sc0000646-1510915933:168048..168197TCONS_00027813-exon-sc0000646-1510915933:168048..168197Clytia hemisphaericaexon
TCONS_00027813-exon-sc0000646-1510915933:162233..162621TCONS_00027813-exon-sc0000646-1510915933:162233..162621Clytia hemisphaericaexon
TCONS_00027813-exon-sc0000646-1491911889:168048..168197TCONS_00027813-exon-sc0000646-1491911889:168048..168197Clytia hemisphaericaexon
TCONS_00027813-exon-sc0000646-1491911889:162233..162621TCONS_00027813-exon-sc0000646-1491911889:162233..162621Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000646supercontigsc0000646:162233..168197 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.107508	0	0	0	0	0	0	0.776393	0.77212	0.374991	1.78622	2.3325	3.57294	3.11662	4.07627	5.89096	2.20411	1.28397	0	0.355478	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027813 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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