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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027810 ID=TCONS_00027810|Name=TCONS_00027810|organism=Clytia hemisphaerica|type=transcript|length=1733bpRun BLAST on NCBI transcript from alignment at sc0000646:97235..106233- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00027810 ID=TCONS_00027810|Name=TCONS_00027810|organism=Clytia hemisphaerica|type=transcript|length=8999bp|location=Sequence derived from alignment at sc0000646:97235..106233- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00027810 vs. Swiss-Prot (Human)
Match: SL9A8 (Sodium/hydrogen exchanger 8 OS=Homo sapiens GN=SLC9A8 PE=1 SV=4) HSP 1 Score: 258.84 bits (660), Expect = 1.973e-77 Identity = 135/213 (63.38%), Postives = 177/213 (83.10%), Query Frame = 1
Query: 1093 TFMSSVVAFVKIFFGSSLIGVVSAALSALITKYVDLRQHPSLELGMMFIFAYAPYGLAEGLQLSGIMAILFCGIVMSHYTHFNLSPVSQITVQHLFRTAAFVGETCVFAYLGMSIFSYDHKFEAAFIIWSIVLILVGRAVNIFPLTFVLNYFRETKISRRNQLIMWFSGLRGAIAFALAINLDSLEEDKRRXXXXXXXXXXXXXXXXXGGSTL 1731
TF+ ++ F+K+FFGS+ +G ++ +SAL+ K++DLR+ PSLE GMM IFAY PYGLAEG+ LSGIMAILF GIVMSHYTH NLSPV+QI +Q RT AF+ ETCVFA+LG+SIFS+ HKFE +F+IW IVL+L GRAVNIFPL+++LN+FR+ KI+ + IMWFSGLRGAI +AL+++LD +KR+L+ TTT+VIVLFT+L+LGGST+
Sbjct: 256 TFLQALDYFLKMFFGSAALGTLTGLISALVLKHIDLRKTPSLEFGMMIIFAYLPYGLAEGISLSGIMAILFSGIVMSHYTHHNLSPVTQILMQQTLRTVAFLCETCVFAFLGLSIFSFPHKFEISFVIWCIVLVLFGRAVNIFPLSYLLNFFRDHKITPKMMFIMWFSGLRGAIPYALSLHLDLEPMEKRQLIGTTTIVIVLFTILLLGGSTM 468 HSP 2 Score: 207.994 bits (528), Expect = 1.309e-58 Identity = 121/203 (59.61%), Postives = 159/203 (78.33%), Query Frame = 2
Query: 311 MTIFFVLSVLGLCIITIHFLIKTKFSYLPESVAIVFVGAMLGGLIQLLKKYNLADWEKEEXXXXXXXXXXXXXXXXXESGYNLHKGNFFANIGSIIVFAVFGTLISAVIVGGVIYILGKGNIIHPLTSKESFVFGSLISAVDPVATLAIFHALNVDPLLNMLVFGESILNDAVAIVLTR*TNVSLCLNSRTLDEIVQ*SAFLK 919
MTIFF L VL +CII +H LI+ + +LPESVA+V +G ++G +I++++ LA+W++EE+F P +FFL+LLPPIIFESGY+LHKGNFF NIGSI +FAVFGT ISA +VGG IY LG+ ++I L +SF FGSLISAVDPVAT+AIF+AL+VDP+LNMLVFGESILNDAV+IVL TN + L + + ++ FL+
Sbjct: 60 MTIFFSLLVLAICIILVHLLIRYRLHFLPESVAVVSLGILMGAVIKIIEFKKLANWKEEEMFRPNMFFLLLLPPIIFESGYSLHKGNFFQNIGSITLFAVFGTAISAFVVGGGIYFLGQADVISKLNMTDSFAFGSLISAVDPVATIAIFNALHVDPVLNMLVFGESILNDAVSIVL---TNTAEGLTRKNMSDVSGWQTFLQ 259 The following BLAST results are available for this feature:
BLAST of TCONS_00027810 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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