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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027805 ID=TCONS_00027805|Name=TCONS_00027805|organism=Clytia hemisphaerica|type=transcript|length=1360bp
ACCAAGAGATGACGAGAATCATGGAAAATCAGTACCAGACGGTCAGCTAA
AAAACTTTCACCAGCAAATAGCAATGTCAAATGATAACAGATTGAATGAG
GTTCTCAAAGAAACGCCCTACGTCGCAAGTGGAGAAGTAATTAAAGGGTT
TGGACGAGGAAGCAAGGAGCTTGGAATTCCAACTGCAAATTTTCCAGAAA
CTGTCGTTGATAATTTGCCAGAATACATTACCACTGGTATTTACTATGGC
TGGGCAAATATCGATCAGGGGCAAGCCTTTAAAATGGTTGTTAGTATCGG
CTGGAATCCTTACTATAACAATGAGAAGAAATCCATTGAAACACATATCA
TTCATAAATTTGATAAGGATTTTTATGGGTCAAATCTGAAAATAGTGATT
GTCGGTTTTATACGTCCAGAGAAGAATTTTGATTCACTTGAGTCTTTAAT
TGAAGCTATCGAATCAGACATTGCACATGCAAATTCAAAATTGGACAGTG
GCAATTTGGACTCCTTCAAATCCTATTTATAACCCAGACCCGTCATCATT
AAGGGTcgagaaatgaaatttttaaatcttgttaaaagaaaataattttg
atgtttttgtgaggaatattatttttgttattgacAGTGTAAATAACTTT
TCCACTTTTTTTAGATTAACTATTTAATTAGAATGAACTATATATTATTT
ACTGCACTGCACACTTGGAATTAAAATTTCAATACACTACACATAGATCG
TTTAATATATATATGGtgtatagtatgaaaataagatgttttctcctgtc
agatctacaaacaacaaagaatggccgaattctttttcctcttagagaga
cgatgttataatgaaagggtaattagtcctctctgggtcccNtaatgaaa
gggtaattagtcctctctgggACTAATACTAAACTACATATATATATAAT
GATATCTAACAACCATACACACTTTCCTTCGCACTATTTAATTGTTGGAG
AtataaataattttgatttctttaaagaatgaTAGCAGCTCTAATTATTT
GCAATTTTGCTCTCTATTTGAGCGACATGTTTTTCCAGTGAAATGGTAAG
GAAAAGGGCTAGGAAATATCCATGTTTATGGTTTATAATTATATTCACTA
TGtatgtttggaaaaaaatatctttgtaaTATCAATGAGCACTGCACATG
CactattttttaggtttttcgtAAGTGCAAttatatattttaattatgTT
CAAATGTTGAAAAGCTTACATTAAATCAAACATCAAGTAAGTCTCAACTA
ACAAAATTTCTTAAGACCTCAAACACAAAATTCCATGTGTAGTAATTACC
TGAACTTAGG Run BLAST on NCBI transcript from alignment at sc0000646:124295..132118+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027805 ID=TCONS_00027805|Name=TCONS_00027805|organism=Clytia hemisphaerica|type=transcript|length=7824bp|location=Sequence derived from alignment at sc0000646:124295..132118+ (Clytia hemisphaerica)
ACCAAGAGATGACGAGAATCATGGAAAATCAGTACCAGACGGTCAGGTTA
GATTTCGTCAAAAAAATAGATAGTTTTCTTTGAATAGCTCTTATTGGCTT
CATTATTAAGATTTTCTGTAACACAAAAAGTTGTTCAGTTTCAAATagac
cttttttcaaagagaccACCCTGTCACCTGttaaataattatgtagtcca
gcagaaaaacaatgatgtatacagccatgcatatataattactgtatcat
gcatagtGTAATAATTAATGCATGGTTGTATCATTGTTCTTGTTGaagcg
aagcaaaattttttattttgagaaagaATGGTTAgcagaaatggtggata
aggtgatgttgggaaaataatgaataatgaataatgaaatcatgccgcat
ctatttttgggtaagttcacaacggtaaactcatatgtaaatttcatcgg
ccaaaatggcccgcgcgtggcccgcgcagtttcggaccatgtcgggccag
attttcgaaaactNATGGCCCGCGCGTggcccgcgcagtttcggaccatg
tcgggccagattttcgaaaacttgctactacaatcgcgcgtgtaatttca
ggacccaatatttatattttaaattccttatttagcaaacaaatagacct
ttttttaaataggcagccatgttgaataattatgtactccaacataaaaa
caatgatacagctaTGCATAATTActatatcatgcatattttaaaaatta
tgcttcaataatacttttttgtggcccgagcatggtccgaacaggtccaa
acatgttcgggccatgccgtgggttgTATTCTGGCAcccttttttagaaa
cagaaatGATATGAAAGCTTaagaatcactgattgaaaaagaatattCCT
CTCTTCTGTACTCTGTTCTGACCATCAGAACATTATTTTTATGTGTAagt
aaagtcaaagaaaaacagtttcaacctttctatcaatttcagctgataaa
aagtgtgtcgaaattagaggagggatgtcaacattccCAAGTTACAGTAt
tccaggcgtagttaatcgatataatcgataatcttgagtaatcgataaat
aatcgatgagtaatcgatggattagatatcgattaaccgatagaattgat
aggtaatcgatactcaagattttttcaaagcttcattatttatcgatcaa
ttttgtcatcgattgattatcgattatagatcgattatacttcaattaaa
ttaagtatcgattaaaaatcgatcggctatcgatcacagcttttgatcga
ttacatatcgatcaaaaattgattaatcatcggtcaaatagttaatcgat
caactatcgatttgtgatcgattatttatcagattttagggagtggtact
ttaattggattaactttctccattttcgcgagattaaatttctcgatttc
tcgaattttcgccattttcacgcaattaaaagcaacatttttcgctgatc
tcaattgggatgtacttttgaattgaatccaatTGCCTGGTAGCATAGGG
CCTACAAAAAGcaactacactcattttttttataagcatacggtaaattc
cggctgaagcattctcaaaccctctgaaaggatgaacaaaaaaaagttta
aaaaaacaaagttaccgttttatttagagaaggggcattattgaatggtt
tgcctttttggaggagcattattaattcgaaagcggcgtttattcaaagt
aatacgatcggtatgaaatttggcaaattccagaaatttttacttcatta
aataccttatcttggccctttttacgctggACCTTActagcgttattttt
gggctcgttggtGGAATTAGGGTCGGCGTAAAAAGGGTTGGTAATGTAAT
CAATAGTCGGTCACGATCGATATAATATTTAATCGATAACGATATACGTG
ATCGAATGCATGAACAataagtaatcgatgattgttaacaatcgatacat
gattgataagtaatcgataggttgtatgtagtcgatatgtgatcgataag
taatcgNCTTGGAAATGATCGATcgctgatcgatactcaagattttttga
aggtctgattacctatcgattctatcggttaatcaatatctaatccatcg
attacttatcgattatttatcgattactcaagattattgattatatcgat
taactacgcctggagTATTAGGCAGTTACCttaaaaaggaagaaattttg
gcggaaagaaaatttggcggatttggcggatttaactgaaatccgccaaa
ttaagttcgcgccaaaatttcttttttccgccatccgccaaattaaattc
ccgccaaattaaattcccgccaaattaaacattttgaaaatatgatctct
tttaggtgtttttgctatttttcgctgttttgacgccatctatcttaagg
ttaaatttttaagcaaccggcaaattaaattcccgccaaatttagttttt
tcgtccatccgcgccgccaaattaaattccctctaaaaaaacttttttgg
cgatccgccaaattaaattaccGTCAAAATTACCGTCAAaagtcagtcag
gcacatcctggcaaatgaacggggtgagcatttgcatggggtattcgtca
cccagtgtaaatgagataggacgtctcaggctaaaagcgtgaaaatgaat
aaaaatgaacttcaaactgaaaatggggaaaaaggaagaaaactgggaac
ttatttttttcgttaaaagtttcttcaatcttcgaagacaaaattgaccc
atggaaaaaaaatttcatctatgcagttctttgaaataaaGCAatatatt
tccaacccggttcaattgcgtggggtattcagtgctattacatcactttt
gttttcgaccccttgcatttgccaccaatcgcaagtgaaaaataccccat
tcatttgccaggatgcgCCTGGTAGTCACTAGCGTCTATACAGACACTAG
CGTCTATACAGACACTAGCGTCTATACAGACGCATCATGTTTTCTTTCAA
TTCTAACTGGATTGACCTAATTAATATCATTATTGACCAAGAAGGTAcag
gtaccgtgagattgggtaacttgcatcagcgggggctaacatgcatagcc
ctcaaatgatgACCttgctggtcattaaaatacaactacacagctaccat
ttttgttttgattcaactTTATACTTTGTATTGCCACTTGTCTTGTTTTC
tagtaaaaagaaaaagaaaatttttgacaattttgctggtccccatgCAG
GGCTGGCGAATTGGTTTTAAAAGTGAGGGGGCTAAAtgatatagtgacta
aggaggccccaccatggttggggccgacgggccggaaaatttttgaaatt
atggtaCTCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTAATC
ATGTTTTTTTGCTTTGCTAACCTTAATTATGATGAAGTGCTTCTTTCTTG
GCACAGGATAACATGTCGTTTTGAAACGTGACCTTATTAAGGGTCTAGCT
CGAAATTAGTCAGGTGACTAATTCCATTTCTCAATGATTAAATCTTACTC
TTCCAAAGGGTTTCTTATTGCCGTTTTTCAATTTCCATCTCTGTAGTACG
GAATCTAATGAGACTCTAGGTGAGTTTGGGTACATTGCAGCATATTGTAA
TTCAtagtcagttacatcaatatgccaaaaacattttgttcaaccacctt
cacttcaagataggccaccatagaatgaacttccttttcttttataggat
gaaccatattcatgtggctttcagccttgcattccatcacagagcctatt
tgagatattttactaactagcccagagaaaaattttaaaccttcattata
tgaatgcatgcctttttaatactcaaaaatataaaaaaattaaatttttt
ttaacttggtcattagtcaaaaaagtcattaaaattgattagcctctgcg
atggagtgcaaggctgaaagccacatgaatttGGTtgatcctataaaagg
aagttcattctatggtggcctatcttgaagtgaaggtggttgaacaaaat
gtttttggcatattgatgtaactgatagTCAATGGTGAATTCCATGAATG
CTTTGAATGTGTCATCCGAAAGGCAGTTAGCTTAGGGTTAAAGTAGAGTT
GTGCTGTGTTGGTTGTACTCATAATTAACAGACCTAGCTTTTTGGTCAGG
TAATTCATCAGCCGTTGAAGGCTGTATCAACGAAGAAGAtttttaaacgg
ttatagctgatttccttacctaactcgagatatttcatgcgcaagttcca
ctttttgCCACATTTTGGTCAAAGTTGATGGAATGGaattctgcgtgaat
tatctcgagttaggtaatgaaatcggctatacccgtttaaaagtcttcta
tatagtttttcgagagctttcgaatggtatatacTTGATAATgcctgaaa
atgagtttgaaattttcaaaaatttcgcccttagggttttgcctggggaa
aaaagaaatgtcccaaaaaaggaaTGTttcaccagtgggattttagggga
ttttttcctgaggcataaccatcttATAGAGAAGgcctggagaaagtttc
agctagatcttttttttttcccgtaaattatgctaaacaaCCCCACTATG
ATTGCCCTCCTTTTATCTTCATCGCCTAGAATAATAAATTGTcaatattg
tatttttatttagtAAATATTACTTATTGAcgccatagtgtcctcctggg
ttggttccccccactaaaaatcaaaatttttctccattcccccctctttt
atttcccccaccatatttcaaaatttttcggttcccccctcttttttgta
ttcccccagctatttgtagattttgcggttccccatatggttaacataaa
aatgccttaaatccagtttgaaattttggaaagcttgaaaaaaatagcct
tgaaagtgctggaaaaatgaaattgtattgaaaagttggtttatcccaga
agatttgctgattttattgcttaaacaggttttgcaacaagatcaccttg
agatcagtgaagttccccctgtgaaaatctcctaaatctatggttttccc
ccctctttattttcccccagcaaatttcaaatttttcattttcccccata
cttaaaaaaaagggccaaaatcagaatcccccccctttataaaggggggg
gaggacactatgcacTGACCGTGACTGAAATATATAAAATAGATAATCTA
GGGAATTAGACAATATACATCAGGAATAGGGTTTGGTCACATGACAGTAT
TATACTTTCCAAACGATCAGGAAAACTATGGCAAAAGTTGTGGATGTGtg
gttttttagtttttttaagttGGACACAACATGGAGCCTGACTGTGGAGC
CTGTCCATGTGATTGAAATTCCCCTTCAATTTAAGTTTTTCTAGCTGTTA
AAAAAAGAGGATATACACAcgttttttgttctttttaagaaactagtttt
accaagcaacctcaatgtttcttaagaaatcggccttttgagcctttaAA
AATGTCTCTTACATGTTtccaaactttttgacataatcagcctattttcc
atgcaaagaaaaaaaaacattcgttttgattggaaggttctttaaaaaaa
acgagttaaaaaattttattttctcattctcagcctcagcatgtttctta
gatgtttcttagttttagGCATTATGAGCCTCGTGAAAAAACAACAACGT
GTAACTaaacagtaaaaaactttttcagggTGCACACGTTATTATATCTT
GATAATTTTAATAGTGGGTTTATAATGTTTTGATAGTGTGGGTAGTTGTG
CCCCTAACTGATAAACGCACTTCTTTAAACGCTATTTTTTGCacaagtga
gtaccaagctttaGAGTATAATAAAcattgcagattttttataaaacaat
atttttgttgaatttcggAGTAATTTAGTATGACCATATATTTTGGAATC
TTGCTtgaatttttaaatgtaaaGAGTTTTGTTTATTGATTGGTTCAATA
ATTTTCCATGGGGAATATATCTTTAAAAGTAAGAGTGTTATAATGATATA
GATTAGTTTGCTTTGTatgaaaaatattacaaattaGACTAAATCCTTTC
AAATTTATAGCTAAAAAACTTTCACCAGCAAATAGCAATGTCAAATGATA
ACAGATTGAATGAGGTTCTCAAAGAAACGCCCTACGTCGCAAGTGGAGAA
GTAATTAAAGGGTTTGGACGAGGAAGCAAGGAGCTTGGAATTCCAACTGC
AAATTTTCCAGAAACTGTCGTTGATAATTTGCCAGAATACATTACCACTG
GTATTTACTATGGCTGGGCAAATATCGATCAGGGGCAAGCCTTTAAAATG
GTTGTTAGTATCGGCTGGAATCCTTACTATAACAATGAGAAGAAATCCAT
TGAAACACATATCATTCATAAATTTGATAAGGATTTTTATGGGTCAAATC
TGAAAATAGTGATTGTCGGTTTTATACGTCCAGAGAAGAATTTTGATTCA
CTTGAGTCTTTAATTGAAGCTATCGAATCAGACATTGCACATGCAAATTC
AAAATTGGACAGTGGCAATTTGGACTCCTTCAAATCCTATTTATAACCCA
GACCCGTCATCATTAAGGGTcgagaaatgaaatttttaaatcttgttaaa
agaaaataattttgatgtttttgtgaggaatattatttttgttattgacA
GTGTAAATAACTTTTCCACTTTTTTTAGATTAACTATTTAATTAGAATGA
ACTATATATTATTTACTGCACTGCACACTTGGAATTAAAATTTCAATACA
CTACACATAGATCGTTTAATATATATATGGtgtatagtatgaaaataaga
tgttttctcctgtcagatctacaaacaacaaagaatggccgaattctttt
tcctcttagagagacgatgttataatgaaagggtaattagtcctctctgg
gtcccNtaatgaaagggtaattagtcctctctgggACTAATACTAAACTA
CATATATATATAATGATATCTAACAACCATACACACTTTCCTTCGCACTA
TTTAATTGTTGGAGAtataaataattttgatttctttaaagaatgaTAGC
AGCTCTAATTATTTGCAATTTTGCTCTCTATTTGAGCGACATGTTTTTCC
AGTGAAATGGTAAGGAAAAGGGCTAGGAAATATCCATGTTTATGGTTTAT
AATTATATTCACTATGtatgtttggaaaaaaatatctttgtaaTATCAAT
GAGCACTGCACATGCactattttttaggtttttcgtAAGTGCAAttatat
attttaattatgTTCAAATGTTGAAAAGCTTACATTAAATCAAACATCAA
GTAAGTCTCAACTAACAAAATTTCTTAAGACCTCAAACACAAAATTCCAT
GTGTAGTAATTACCTGAACTTAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027805-exon-sc0000646-1491911889:124295..124340 | TCONS_00027805-exon-sc0000646-1491911889:124295..124340 | Clytia hemisphaerica | exon |
| TCONS_00027805-exon-sc0000646-1510915933:124295..124340 | TCONS_00027805-exon-sc0000646-1510915933:124295..124340 | Clytia hemisphaerica | exon |
| TCONS_00027805-exon-sc0000646-1575043694:124295..124340 | TCONS_00027805-exon-sc0000646-1575043694:124295..124340 | Clytia hemisphaerica | exon |
| TCONS_00027805-exon-sc0000646-1491911889:130805..132118 | TCONS_00027805-exon-sc0000646-1491911889:130805..132118 | Clytia hemisphaerica | exon |
| TCONS_00027805-exon-sc0000646-1510915933:130805..132118 | TCONS_00027805-exon-sc0000646-1510915933:130805..132118 | Clytia hemisphaerica | exon |
| TCONS_00027805-exon-sc0000646-1575043694:130805..132118 | TCONS_00027805-exon-sc0000646-1575043694:130805..132118 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000646 | supercontig | sc0000646:124295..132118 + |
Blast
BLAST of TCONS_00027805 vs. Swiss-Prot (Human)
Match: RIFK (Riboflavin kinase OS=Homo sapiens GN=RFK PE=1 SV=2) HSP 1 Score: 192.586 bits (488), Expect = 1.778e-58 Identity = 86/131 (65.65%), Postives = 104/131 (79.39%), Query Frame = 2
Query: 104 LKETPYVASGEVIKGFGRGSKELGIPTANFPETVVDNLPEYITTGIYYGWANIDQGQAFKMVVSIGWNPYYNNEKKSIETHIIHKFDKDFYGSNLKIVIVGFIRPEKNFDSLESLIEAIESDIAHANSKLD 496
++ PY G+V++GFGRGSK+LGIPTANFPE VVDNLP I+TGIYYGWA++ G KMVVSIGWNPYY N KKS+ETHI+H F +DFYG L + IVG++RPEKNFDSLESLI AI+ DI A +L+
Sbjct: 1 MRHLPYFCRGQVVRGFGRGSKQLGIPTANFPEQVVDNLPADISTGIYYGWASVGSGDVHKMVVSIGWNPYYKNTKKSMETHIMHTFKEDFYGEILNVAIVGYLRPEKNFDSLESLISAIQGDIEEAKKRLE 131
The following BLAST results are available for this feature:
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