TCONS_00027766 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027766
Unique NameTCONS_00027766
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length532

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027766 ID=TCONS_00027766|Name=TCONS_00027766|organism=Clytia hemisphaerica|type=transcript|length=532bp
ATTACGAAATTCAGTTTCAAATCAAGTTCGACAACCAAATTGACTTATAA
TTTGTTGGGATTTTGACTGTTTTCTTGGCAAATTATCACTTTCCTTTAAT
TGAGCAAAACTCTTACAAGTGTTATTAAAATTGGTGTACACATGTGCTAA
ATAATTNCACTTTCCTTTTATTGAGCAAAACTCTTACAAGTGTTATTAAA
ATTGGTGTACACATGTGCTAAATAATTTGTAGAGCTTAATTAATTTTGAG
CCTTAGTTTGAAATCTTGTACCTgcaatttaatgatttttattttcataa
tgaTAATaacaatgataataataattaaTCAAAATCAATCAGTTTCAATG
AGTATTTTATacataatttttgagaaaatggacGATGGGaagttttctaa
aaatcgtTGAATAAtctctttttgagtttttgttaaagatttgaaaatca
aaGAGTGTAAAAACAGATCGTGAAATTAATGATCGATTTTTAGACACAAT
TTTAGCAGCTTCTTTTCGAAATCAATGAAGAG
Run BLAST on NCBI

transcript from alignment at sc0000644:60833..61364

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027766 ID=TCONS_00027766|Name=TCONS_00027766|organism=Clytia hemisphaerica|type=transcript|length=532bp|location=Sequence derived from alignment at sc0000644:60833..61364 (Clytia hemisphaerica)
CTCTTCATTGATTTCGAAAAGAAGCTGCTAAAATTGTGTCTAAAAATCGA
TCATTAATTTCACGATCTGTTTTTACACTCtttgattttcaaatctttaa
caaaaactcaaaaagagaTTATTCAacgatttttagaaaacttCCCATCg
tccattttctcaaaaattatgtATAAAATACTCATTGAAACTGATTGATT
TTGAttaattattattatcattgttATTAtcattatgaaaataaaaatca
ttaaattgcAGGTACAAGATTTCAAACTAAGGCTCAAAATTAATTAAGCT
CTACAAATTATTTAGCACATGTGTACACCAATTTTAATAACACTTGTAAG
AGTTTTGCTCAATAAAAGGAAAGTGNAATTATTTAGCACATGTGTACACC
AATTTTAATAACACTTGTAAGAGTTTTGCTCAATTAAAGGAAAGTGATAA
TTTGCCAAGAAAACAGTCAAAATCCCAACAAATTATAAGTCAATTTGGTT
GTCGAACTTGATTTGAAACTGAATTTCGTAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015682XLOC_015682Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027766-exon-sc0000644-1491911889:60833..61364TCONS_00027766-exon-sc0000644-1491911889:60833..61364Clytia hemisphaericaexon
TCONS_00027766-exon-sc0000644-1510915933:60833..61364TCONS_00027766-exon-sc0000644-1510915933:60833..61364Clytia hemisphaericaexon
TCONS_00027766-exon-sc0000644-1575043694:60833..61364TCONS_00027766-exon-sc0000644-1575043694:60833..61364Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000644supercontigsc0000644:60833..61364 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.01794	1.82086	0.621822	0.851698	3.99932	1.05344	1.977	0.528813	2.03629	1.49043	0.890247	1.09727	0.730499	0.682768	0.12474	0.200797	0.329821	0.253542	0.350281	0.366544	2.54875	1.61676	2.14095	1.51758	0	0	1.23596	0.504587	0.975295	0.745253
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027766 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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