TCONS_00027677 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027677
Unique NameTCONS_00027677
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1666

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027677 ID=TCONS_00027677|Name=TCONS_00027677|organism=Clytia hemisphaerica|type=transcript|length=1666bp
TTTAGATacgattaaaataaaaaagttaaaatagaaaataatgtCATATG
AGAGATTTGACAGTGGAACACAAAACTCAAACATGCAACAAGGTTTTCAA
CATCAAAACACAACAATGGTCGTTGCTGCTGGAGGAGCACAACCAGCTCC
TATAATTGTTGCACAACAACCTTACAATCGTTTTGCTGCCAAAGCTCCTG
CAACTAGAAAAATAGGTTATTGGATTCTATTGAATGGCATGATCACTCTT
GTTCTTGGAGTTGTCATGATAGCAGCAACACTTGATTATTGGACTTCCTT
CATTGCTAGTGGTATATGGACAGGAGTATTTGTGATCATCGCTGGAACAC
TTTGTATTGGTGCTGGTGCCAATGAAAACAATACTTGTTTAAGAGTTGGT
GCACTGGTGATGAATATTATTGGAATGCTTGCCACATTCAGCTCTGGTGT
GATGATGTTCATTGGGTTCGCAGTTGGTATCAACTGTGATCATACACGAT
GTTACACAGGATATGATGGCAGATGGGTTTGCTACAACGATTGTTTTTGG
GGAGATGCTAAAAATGCTAGCTACCTCTCACTTGCAGTAGCCGTTATGAA
TTCGATCGCTTTCATACTGATGTTGGTTGCATCGGTTTACACTGGGTGTG
GTTGTTGTTGCCAAGGCAACCCGTATCCATATCAAGGTGCTGTTATGATG
GCCCCTACTCAACAAGCTTATGGTGGCCCAGTTGTGGTATCCAGCAACCA
AACGTACTCCCAACAGCAAGCGTTCTCACAACACCAAGCATACTCTCAAC
CGCAACCTTACACTGCTCAGTCACAGCAATACAGCCAAGCAGCGATGCCA
ACAGCTAGTGGTGGTCAAGTCAAATATGGTAATGATTATCAGCAACAACC
AAGACAAGATGAACAAAAAGTTATGCCTCCTCAAGAAGCCCCACCAGAAT
ATTCAAGAAACTAACGAATGTTATTCCGTCCATGGGTCATTTGAAGTCTT
TCTTTGTAGTACTTTTACgaaagaaattattttgaattgcAGCTAAATCC
CGAGAAGACGCAATGGACTTAgattattttctgaaaatctcGACCTAACC
CCGGTTCGAACCAGCAAAGTAAGCTTATCAGTGATACAACCCAACACACT
AACCACAAGGTTGCCAAGACGCTGAACATTTCCTTAACTTGAGCAAATTC
ATAAAGTGACATATGTAGTATATAATGGGTAACCAGACCTCACGAGTTAG
TCTAACTGTTATGATCGCAAATCCTCCAAATGAGCCCCACTCATCCTTGG
AGGGTAAACCACCGACCAGGTATGGGGGTCACTTTTGTTTACCAGGTTGG
GCAGCCTCCGTGCTCTATATAGGCCATGCGCGCCCTGCGCGTGATACTTG
TGTCTTCTCGGGGTTTAGTCGCTTCTATTATTTTGTTGTAgaagccatat
ttaaaaatcagaaaaatgatTATTAGAATGAATAATGACCTAATATAATA
ATGTATGTAAATCTACAATCACGgtaaaaatatattgagaatttagctta
ttacctcttttttcgaaatttggagttcacttttgggctaattgaaaaat
ttattcgagtatttcaattcggaaggggtttatagacttctatgctatat
tctgagccctattgca
Run BLAST on NCBI

transcript from alignment at sc0000639:104401..108756+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027677 ID=TCONS_00027677|Name=TCONS_00027677|organism=Clytia hemisphaerica|type=transcript|length=4356bp|location=Sequence derived from alignment at sc0000639:104401..108756+ (Clytia hemisphaerica)
TTTAGATacgattaaaataaaaaagttaaaatagaaaataatgtCATATG
AGAGATTTGACAGTGGAACACAAAACTCAAACATGCAACAAGGTTTTCAA
CATCAAAACACAACAATGGTCGTTGCTGCTGGAGGAGCACAACCAGCTCC
TATAATTGTTGCACAACAACCTTACAATCGTTTTGCTGCCAAAGCTCCTG
CAACTAGAAAAATAGGTATGATTTTATATATTCAATGTCTATAATATAca
cgaaatttatttttttttaattaattttctcGTGGTCTTATCTAGGCCCG
GCAAACGAAATAATACATGGCCTCCGGCGTGCGAATCGAATTGAGGAGGC
CAATTGAATCTGTCGCCCACCATGATTGGgtgacgaagaaaattttcgac
ttttcacccttatttcacccctctaaacggtagatataagattttttaaa
gtaaagaaaattacTTAGCAAAATGTTGAGGGGGGGGGCGCATGGTGACG
GGGGCCATGTAATAAGACACAAAAAAATTACGATTTGCTGGTAGAAAGAT
TTGGTTCGACGCCTATATCAATGCTAATCAATACTGGGCTTACTATGAAA
TAGCCGGTCTAGAATCTAGAATTTTCCAGCAAGCCTATCAAAAACAAGAC
AAAACTCCTGggtaaggaaaattatttatcAGAAGGTCAGATTGACGGAG
TGTTTAACTGATAGAAAACCACTATGCCACAATTATCTGAGATTTTAGTC
TTTCAGCACTCTTGGACTTTCATAAGGAATAAAAGATCCCCACTTTATAT
ATGTATCtggataaattttcttttcagttgATAAcccaggcccggcggaa
gcggggaaGCCGGGAAGACTTCAGCCTCCCTAATTTTGatcaaatgagat
tttttcttctcaaattcctagcaaatCTTATCTCAAgctccccactttta
cggttgttccaccGAGCCTGTTACCCATTAAGTGCCACTCATAGCATTTT
GAGACCACTCATCTTTTTTGATTATCTACCGACCGGTCAGGATCTAGGAG
CGCTGCAAGAGTCAAGATTTAGAATTTAGAATCAAAAGaatatttgaaaa
cttaaaagtTACGGAGCGAATGGTCATTTCAAATTCAATGGGTataaatt
gcactccaaaatgTGCAGTAAAAATGTGAAGCTTTTAAACTAACTTACAT
TTTTCTATACAAGACTTGCGTATATAGAGCACTGAAGATGATTTTTATTC
CAAAAGCTTTTGCTCAATTAAAATAagactttgttgtttttttcttttaa
tgaaCATTATATTCTATTATATTCCAAGGTTATTGGATTCTATTGAATGG
CATGATCACTCTTGTTCTTGGAGTTGTCATGATAGCAGCAACACTTGATT
ATTGGACTTCCTTCATTGCTAGTGGTATATGGACAGGTATGCTAGACGAA
TCCCCCCAAAGGGATTCAAAATTCACGCAATCATGCAAATTTCTTTTCAG
ATGTCATGCCATATTGTTCGGAAATTCACGCCATCATGCCACGTAAAACC
ATCCATTATGCCATCATACCAAGCACTGGGGGAAGGGACTCCTACTACAC
CAGGCCGAATAAAATCCTAAATTTAATGATTCTCAACATTTGTACTTGAC
AGGGTCGTCTTTTGGTTagtttggacaattttcagggtggaaattggCAA
GGCAAGTTTTTCAACAATTTCTCTGCATTTCGTCATTTTTGCTACTTTTC
AAGGTGAAAATGAGAATTTCTTTTCGCTTTTCCTTCCGAAAGGGTCCcta
atttaccaaacattcatatctgacagggtcaacttttcaaattccagtgg
cacgtccccgtcgggcATCAGGGTCAGTGCCCCCTGCCAATTCGATTGAT
ACGTGCATATGTGTATTATAATAAAGGGAAAACAAGACATATTTCAGTAT
TTTCCTTCCTCAGGAGTATTTGTGATCATCGCTGGAACACTTTGTATTGG
TGCTGGTGCCAATGAAAACAATACTTGTTTAAGAGTTGGTGCACTGGTGA
TGAATATTATTGGAATGCTTGCCACATTCAGCTCTGGTGTGATGATGTTC
ATTGGGTTCGCGTAAGTCTTTTTAATATCGGTGGTCTTGCAACCAGAAGA
AATCAAGATAAACTgcttttttttaagaagtcCGTGTCTTTTTCGTCAAT
TAATcccgagaaaaaaaaatccaagaccGTTAATTTTAACATCAGCGAGT
TTATggatgtgtgtttttctgcgacggagacagTTAGCTTCTGATTTGAC
TACATCCTGAATGGcagaggacgacggtaaataaGTACTTTTAGCGTCCT
CGATTTGGCGGGTCAAAAATGCGAGTTAATCCAAATCTCTTCGATCACTC
GGCCTTCCTTAAAAGTACACATTCATAAACTCGCTATCTAATATTATATT
GTCGATATTTTACGCATAGCTCAGTAATCTTGGACATCTAGACAGTCTta
cgattgttttcacggggtccactgCCTGTTGGcttggctatctatgaact
gaacagaaCTTGGGAAGGGGAGAGGATTCGAACCTAGAGCCCCTGAGTAA
TGGCAAtgacgccttagaccactcggccatctcTCCGCAAAGACATGACA
TTGTCTGAGATAAAATCGAAAGGCTTAATCAACTTTTCGTGATTCGATTA
TAATTTGTACTCCAGAGTTGGTATCAACTGTGATCATACACGATGTTACA
CAGGATATGATGGCAGATGGGTTTGCTACAACGATTGTTTTTGGGGAGAT
GCTAAAAATGCTAGCTACCTCTCACTTGCAGTAGCCGTTATGAATTCGAT
CGCTTTCATACTGATGTTGGTTGCATCGGTTTACACTGGGTGTGGTTGTT
GTTGCCAAGGCAACCCGTATCCATATCAAGGTAGGGTGTTGGATCTTATC
AGAAACCTCTTTTCTAGAAAcgaattgaaatttttatcatatgttaaaat
tttaacaaaaatacttTTCTTAAAATGGAAGAAGCCCGGGTTACCCCATT
ATGAaatttgaacttgtattcacacACCAATGCTGGTGTTTGCCACATCA
TATTCCGATATCCAAAAAGCCTTACAACAAGCAAAATTCCACCGCATAGA
ATTTCAAACTCTTCTGCAGCGGTGATGCAACGCTAATATAGGTCCCGGCG
TGTTCCGTTGAAGTGAGGGGAAGAAATTGGGGGAAATTTTTCGACTGCCA
TAGCTAAGCGATGAAGAAAATTTTGCGCTTTTTATACCTTGTAACACCAT
AAAACGCTCTTTTATGAGATAAAAACATAGTTTTAAGGTTTTTGACTTGA
ATTATGCATCAACTATTTTTATACAGGTGCTGTTATGATGGCCCCTACTC
AACAAGCTTATGGTGGCCCAGTTGTGGTATCCAGCAACCAAACGTACTCC
CAACAGCAAGCGTTCTCACAACACCAAGCATACTCTCAACCGCAACCTTA
CACTGCTCAGTCACAGCAATACAGCCAAGCAGCGATGCCAACAGCTAGTG
GTGGTCAAGTCAAATATGGTAATGATTATCAGCAACAACCAAGACAAGAT
GAACAAAAAGTTATGCCTCCTCAAGAAGCCCCACCAGAATATTCAAGAAA
CTAACGAATGTTATTCCGTCCATGGGTCATTTGAAGTCTTTCTTTGTAGT
ACTTTTACgaaagaaattattttgaattgcAGCTAAATCCCGAGAAGACG
CAATGGACTTAgattattttctgaaaatctcGACCTAACCCCGGTTCGAA
CCAGCAAAGTAAGCTTATCAGTGATACAACCCAACACACTAACCACAAGG
TTGCCAAGACGCTGAACATTTCCTTAACTTGAGCAAATTCATAAAGTGAC
ATATGTAGTATATAATGGGTAACCAGACCTCACGAGTTAGTCTAACTGTT
ATGATCGCAAATCCTCCAAATGAGCCCCACTCATCCTTGGAGGGTAAACC
ACCGACCAGGTATGGGGGTCACTTTTGTTTACCAGGTTGGGCAGCCTCCG
TGCTCTATATAGGCCATGCGCGCCCTGCGCGTGATACTTGTGTCTTCTCG
GGGTTTAGTCGCTTCTATTATTTTGTTGTAgaagccatatttaaaaatca
gaaaaatgatTATTAGAATGAATAATGACCTAATATAATAATGTATGTAA
ATCTACAATCACGgtaaaaatatattgagaatttagcttattacctcttt
tttcgaaatttggagttcacttttgggctaattgaaaaatttattcgagt
atttcaattcggaaggggtttatagacttctatgctatattctgagccct
attgca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015620XLOC_015620Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027677-exon-sc0000639-1491911889:104401..104615TCONS_00027677-exon-sc0000639-1491911889:104401..104615Clytia hemisphaericaexon
TCONS_00027677-exon-sc0000639-1510915933:104401..104615TCONS_00027677-exon-sc0000639-1510915933:104401..104615Clytia hemisphaericaexon
TCONS_00027677-exon-sc0000639-1575043694:104401..104615TCONS_00027677-exon-sc0000639-1575043694:104401..104615Clytia hemisphaericaexon
TCONS_00027677-exon-sc0000639-1491911889:105729..105836TCONS_00027677-exon-sc0000639-1491911889:105729..105836Clytia hemisphaericaexon
TCONS_00027677-exon-sc0000639-1510915933:105729..105836TCONS_00027677-exon-sc0000639-1510915933:105729..105836Clytia hemisphaericaexon
TCONS_00027677-exon-sc0000639-1575043694:105729..105836TCONS_00027677-exon-sc0000639-1575043694:105729..105836Clytia hemisphaericaexon
TCONS_00027677-exon-sc0000639-1491911889:106364..106511TCONS_00027677-exon-sc0000639-1491911889:106364..106511Clytia hemisphaericaexon
TCONS_00027677-exon-sc0000639-1510915933:106364..106511TCONS_00027677-exon-sc0000639-1510915933:106364..106511Clytia hemisphaericaexon
TCONS_00027677-exon-sc0000639-1575043694:106364..106511TCONS_00027677-exon-sc0000639-1575043694:106364..106511Clytia hemisphaericaexon
TCONS_00027677-exon-sc0000639-1491911889:107116..107330TCONS_00027677-exon-sc0000639-1491911889:107116..107330Clytia hemisphaericaexon
TCONS_00027677-exon-sc0000639-1510915933:107116..107330TCONS_00027677-exon-sc0000639-1510915933:107116..107330Clytia hemisphaericaexon
TCONS_00027677-exon-sc0000639-1575043694:107116..107330TCONS_00027677-exon-sc0000639-1575043694:107116..107330Clytia hemisphaericaexon
TCONS_00027677-exon-sc0000639-1491911889:107777..108756TCONS_00027677-exon-sc0000639-1491911889:107777..108756Clytia hemisphaericaexon
TCONS_00027677-exon-sc0000639-1510915933:107777..108756TCONS_00027677-exon-sc0000639-1510915933:107777..108756Clytia hemisphaericaexon
TCONS_00027677-exon-sc0000639-1575043694:107777..108756TCONS_00027677-exon-sc0000639-1575043694:107777..108756Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000639supercontigsc0000639:104401..108756 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.0269731	1.54413	1.15485	2.8134	4.71425	5.75487	6.89281	11.196	4.21245	6.28304	4.98464	0.926535	1.49571	0.701875	1.37288	1.46606	0.84936	0.480543	0.450239	0.412539	0.338866	21.9181	18.7097	0.669055	0.881697	1.39075	0.662204
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027677 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top