TCONS_00027595 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027595
Unique NameTCONS_00027595
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length292

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027595 ID=TCONS_00027595|Name=TCONS_00027595|organism=Clytia hemisphaerica|type=transcript|length=292bp
CTTGAGTGTGGGGAAAGAAAACAGTTGATGTTTTAAGGAACATTTAAACA
AGCAggATTATTCGAACGAGCAAAGGAGAAAGTCGTAAAGATTTCCTACC
GTAATTTCACACTTGCATAATAAAGACTTATGGGACATTACTTTTTGTGC
ACAGCAGCAAAATTGTACAAATGACCTGGAATGTCATGCTTTAGATTGGA
GGATATCAACAGCATTGGATAACTCACTAATGATTACGACTAAAAGGACA
TTGCGAAGAGGACAACAAACAAGTGAAGATAGTTTTTGTAGA
Run BLAST on NCBI

transcript from alignment at sc0000636:1823..6674+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027595 ID=TCONS_00027595|Name=TCONS_00027595|organism=Clytia hemisphaerica|type=transcript|length=4852bp|location=Sequence derived from alignment at sc0000636:1823..6674+ (Clytia hemisphaerica)
CTTGAGTGTGGGGAAAGAAAACAGTTGATGTTTTAAGGAACATTTAAACA
AGCAGTAAGTGAAACTTCTATATTAATctttaaaaagtcttgaaaaattt
ACATTCCTTTCTAGCTAAAATTGAGCCAATCTTTAAGTCACAACAGACAG
GGATTTCAGAATTCGCTCTTAGAGCATTTCACAGAATATTAGTACAGTTT
GGAGCGTTGTTTTTTAGTTTGGTATATTCATTTATGCCAACATTTCCATG
CTGATTGCTTAgacatttctgaaatctgaggccgagtttgttttttaatt
atttctaaGGTTTTGGCTCAAATCAAACCTCACGTTCTAATAAAATTGCT
CGGTTAAacagattttatttcaaatattaATATACCCTTTTCTATCTTCT
TTGGATAAGTTGAATTTCTAAGTTACTTAAATGTCTTGAAAATAGAAGAT
GTATTGATTAGGTGAGCTTTCAACTTGtattcatatttttcttctttagg
gATTATTCGAACGAGCAAAGGAGAAAGTCGTAAAGATTTCCTACCGTAAT
TTCACACTTGCATAATAAAGACTTATGGGACATTACTTTTTGTGCACAGC
AGCAAAATTGTACAAATGACCTGGAATGTCATGGTACGCACTATGATTTT
ATGATTCACATTTCACCTTTATTACATTTGCTGCATAAGGGACCGGTGTA
GGACATTGCTAACCATTCGAATTTGCaaataatacacccctgtctcacag
ccccggtggtacttttttcctcagtgggaatAAAATTTCCTGTCGAAATT
CaagtgggaataaaaattttattgtttcaagtTCCAAGGTTCAAAACTCC
ATTCggggtggttttggagtgcagcttataaacattgattttcggctggg
gatgaaatcatagtcaatttctcagtgggaGTGAAATTCCCGGTAGTTGt
tctaccggggacgaaatttttgccaaatattcCCGTGGGGCTGggatccc
agcgggtctgtgacacgggtttaataattaatgaaaattaataaaacCTT
GTAAATTTTGAGTTTATTTTAATAATATTGCTAGTAATCTTTGTTGTGAT
AGGATTGCACAACATAAAGCACTTTCTGTAAaagcaattttaaagtgctA
ACTTTGAAcaatatcaataattattttttaacattttttcttcTAAATCA
TAGCTTTAGATTGAAGGATANTTTTTAGTATAGGCGGGTAGCggggtttt
ctcaaaatcttcaagtttcagtggggaccgacagggaaataaaaattttg
aagagctacttagtggggatctagaaaaattaaaagttttcagtggggat
tccCCGGAGGCAAATTAAGCCTGTTTTTCTCACCGGGGACAagattttgg
acttttttttcagcgggtgggggtgcccagcgggtctgtgacacgggggt
gtATTAGAAATAAAcccattttattttttagaaaactgcaaggaaaaaga
gaactttcatttataacaagttaacaactgaaaattgatcaattttatga
attattttatcattttctgaGAAGAACTTTCAACCAGAAGGGAGGGTACA
GATTTGAAACTTGTTGTTAAAGTTATGGACTTTTCCTTTAGAAAATgaga
tttaaaatttcattatcaaagaagaaaacaaatagCCCCAGATAGGAGAG
CTGACCAGACTTCCAAACacaagtaaacaaaacaaaaagaagattAAAAA
GCTAGCTAAGGAATTTTTACTATATAATGTCATTGATTACTAGAACTTGC
TCCTTCGAAATTCTTGATATAATTCTGAAATATAAATACTTCAAATTAGA
TTAGAAAACAGAGAATTAGAAATTTTGTNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNGGGAGTGAAATTCCCGGTAGTTGttctacc
ggggacgaaatttttgccaaatattcCCGTGGGGCTGggatcccagcggg
tctgtgacatagggtttaataattaatgaaaattaattaaacCTTATAAA
TTTTGAGTTTATTTTAATAATATTGCTAGTAATCTTTGTTGTTTTAGGAT
TGCACAACATAAGGCACTTTCTGTAAaagcaattttaaagtgctaacttt
gaacaatttcaataaatattttttaacattttttcgtCTAAATCATAGCT
TTAGATTGGAGGATATCAACAGCATTGGATAACTCACTAATGATTACGAC
TAAAAGGACATTGCGAAGAGGACAACAAACAAGTGAAGATAGTTTTTGTA
GA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015568XLOC_015568Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027595-exon-sc0000636-1491911889:1823..1876TCONS_00027595-exon-sc0000636-1491911889:1823..1876Clytia hemisphaericaexon
TCONS_00027595-exon-sc0000636-1510915933:1823..1876TCONS_00027595-exon-sc0000636-1510915933:1823..1876Clytia hemisphaericaexon
TCONS_00027595-exon-sc0000636-1575043694:1823..1876TCONS_00027595-exon-sc0000636-1575043694:1823..1876Clytia hemisphaericaexon
TCONS_00027595-exon-sc0000636-1491911889:2322..2455TCONS_00027595-exon-sc0000636-1491911889:2322..2455Clytia hemisphaericaexon
TCONS_00027595-exon-sc0000636-1510915933:2322..2455TCONS_00027595-exon-sc0000636-1510915933:2322..2455Clytia hemisphaericaexon
TCONS_00027595-exon-sc0000636-1575043694:2322..2455TCONS_00027595-exon-sc0000636-1575043694:2322..2455Clytia hemisphaericaexon
TCONS_00027595-exon-sc0000636-1491911889:6571..6674TCONS_00027595-exon-sc0000636-1491911889:6571..6674Clytia hemisphaericaexon
TCONS_00027595-exon-sc0000636-1510915933:6571..6674TCONS_00027595-exon-sc0000636-1510915933:6571..6674Clytia hemisphaericaexon
TCONS_00027595-exon-sc0000636-1575043694:6571..6674TCONS_00027595-exon-sc0000636-1575043694:6571..6674Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000636supercontigsc0000636:1823..6674 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.12288	1.47197	0.885617	0	3.30843	1.98112	5.80887	5.33405	3.58203	5.746	1.39747	4.53983	0	0	1.69343	1.29808	1.2793	1.43691	0	0	0.411918	0	0.488487	0.647744	0	0	0	0	0.938623	0.481779
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027595 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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