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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027591 ID=TCONS_00027591|Name=TCONS_00027591|organism=Clytia hemisphaerica|type=transcript|length=2844bp
gggtaagtttttttttgtgaattcaTCGAAGAAGAACAAAGGCAGTATTT
TTAACTTTAATTGTCCGTTTCGGGGATAATACTCTATTTAAAAGGAAAAC
ACTCATATCGTAATCGTCTCGCCATCGTATAAAAAGGCTGCGTCAAAACA
TACTATCATAGCATCGCCGTCACTCAAGGAGAGGACTTTTCGCATTGCAA
ATAAtggaaaaattcttaaaaaccaCATTTTCCAAAGCTTTGTATATGGA
TATCAATCCAGTCATCGGGGCATTGATTGTCTTATCCAATGCATCAGAGC
TTGGCTACATCTTATCGAAAGCAAATCTTCGAAGAAAGATGAGCTCTCTA
ATGTTTTTAGTAAGTTCTGTCATCGTGAACATACTGTTTGGTCTTAATAT
CATCATCGTCAAAATCATGGACAAAGAACTTGGTACCGAGATGAAAAATA
ACATAATGGCCTTGAAAACATGGCGTTTCTTCAAAGGACAAATGATCAAT
ATAGTTTTGCACGTCTCAATATTGAACATTCTATTAGTGACATTTGAGAA
GATGTTGGCAGTTACTGCACCTTTTCTCTTACGTCGATTCACTAAGAAAA
TTCGATGGCTTGTTTTATTGTTGGTTTGGATCACCTCAATCACCGGAGTG
GCAATCTCATACCATTATATGAAAACATACAAAAGTATTATTTACTTGAT
CAATGTTGCTGGTGTTCTTTTTTCAATGGTTGGACAGTCAATTTTCTTCG
CTCTCATCCTTCGAAGTATctacaaatcaaaacaaatgagcAAACAATTC
GATTCTCAAAACAAAGAACGTTCCTTAACAGCCAATGAAAAGAGATTTAT
CAGTCTAGTCTTCAAGACTTATGTCTGTTTGTTTGTGTTTTGGACACCTT
ACACTGTGTTTGCTTTAATGAGATTAACAAACTCTATTGGATTTGATTAC
GACTTCAGTGTTTATGTCCACTCAACGGCCTTCCTAAATTCTTTGGTCAG
CCCTCTCATCTTTTTCTACCATCATTTGAAGAAGTCCATCTATAAGCGTA
TCAAGCGCCTTGCTCAAGGAAAAAGCCCGGCAGAATCAAGTACAGATCCT
TCAAGTAATCAAACAGGTTCAACGGGTATTACACCCAAAGCTGTTGATTC
ATCAGACACACCATATAATCAACCAGAAGATAAAACAAAGGATGAAGAAA
CTCCAGAGCCGGTGATCTCACCAAACCGAATTGTTGTTGAAGTTGCTACT
CAAGGCAATCCGCCAGATCAACTCAATTAAAGAATGTTTAACATTAACCT
TATAACGAGTGAAATTATTCATCTTGTAGCTAAAATATAATTTATGAGAA
CCTTACTTAATTCTAAAAAAACCTTTATTGCAATATATCTCACTAAACTA
ATTGCTATTTCTACTGTTGGTTGTGTCCTgaaaggaaaaacttttttgtc
aaGAAATATACTGAAAATTTATAGCATTACTAACTGATTAGTCTAAAACG
CtttaatcagaacagatcaaaactTCTAGCTCTCAGAATGCATCGGAAAA
AAGGTCGCTTGGCCGGTTGCTTTTCGAATAAGTAGAGGTGATGGATCAGG
AGTTATAACATTCTCAATTTATTGTTAAATTATACGCATTTTTATTCCTC
GTATAAGATGttatttaaaaatcttaaaagtgTAACTTCATTATTAGTTT
ATGATATATTGAAATTATTGACTGCAATAAGTATTACCCTTGGATAAAAT
CATTAAATGAATCTCTTTCCTCTGTTGTTAAGATGATGAAGTAAGTAGAT
TTTCGTCCTAGATTGCAGTTTCTTTTGTAAGCGGGACGGATGAATGCTCA
GTAGTGCTGATAGAAGTAAGACGGTCCGATTTGCTTCGTTTGGAGAGACG
TGAGATGGACTTCTTCAAATGATGATAGAAAAAGATGAGAGGGCTGACCA
AAGAATTTACGAAAGCCGTTGAGTGGACATAAACACTGAAGTCGTAATCA
AATCCAATAGAGTTTGTTAATCTCATTAAAGCAAACACCGTGTAAGGTGT
CCAAAACACAAACAAACAGACATAAGTCTTGAAGACTAGACTGATGAATT
TCTTTTCGTTTGCTGTTAAGGAACGTTCTTTGTTTTGAGAATCAAATCGT
GTactcatttgttttgatttgtagATACTTCGAAGGATGAGAACGAAGAA
AATTGACTGTCCAACCATTGAAAAAAGAACACCAGCAACATTGATCAAGT
AAATAATACTTTTGTACGTTTTCATATAATGGTATGAGATTGCCACTCCG
GTGATTGAGGTGATCCAAACCGACAATAAAACAAGCCATCGAATTTTCTT
AGTGAATCGACGTAAGAGAAAAGGTGCAGTGACTGCCAACATCTTCTCAA
ATGTCACCAATAGAATGTTCAATATTGAGACGTGCAAAACTATATTGATC
ATTTGTCCTTTGAAGAAACGCCATGTTTTCAATGCCATTATGTTATTTTT
CATCTTGATACCAATTTCTTTGTCCATGATTTTAACAATGATGATATTAA
GACCAAACAGCATGTTCACGATGACAGAACTTACTAAAAACATTAGAGAG
GTTgtgatttgttttcttttgtatttacgTAGGATGTAGACAAATTGTGC
ACCATTGACGATGACGATCAGTCCTCCTATGATTGGGTTAACGGTGAAAT
ACAATGTCTTTGATAGCGCAGTTGTCAAAAACTTCTCCATATTTTCTCCT
AACTTTTAACAGTTTTAAATGTTGATTTTATAAGTCTCAAAATGATACTT
TTCTCAACTCTCAGCCGAATGAAAATTTCCTTTCTACATCAAAG Run BLAST on NCBI protein sequence of TCONS_00027591-protein >TCONS_00027591-protein ID=TCONS_00027591-protein|Name=TCONS_00027591-protein|organism=Clytia hemisphaerica|type=polypeptide|length=358bp
MEKFLKTTFSKALYMDINPVIGALIVLSNASELGYILSKANLRRKMSSLM
FLVSSVIVNILFGLNIIIVKIMDKELGTEMKNNIMALKTWRFFKGQMINI
VLHVSILNILLVTFEKMLAVTAPFLLRRFTKKIRWLVLLLVWITSITGVA
ISYHYMKTYKSIIYLINVAGVLFSMVGQSIFFALILRSIYKSKQMSKQFD
SQNKERSLTANEKRFISLVFKTYVCLFVFWTPYTVFALMRLTNSIGFDYD
FSVYVHSTAFLNSLVSPLIFFYHHLKKSIYKRIKRLAQGKSPAESSTDPS
SNQTGSTGITPKAVDSSDTPYNQPEDKTKDEETPEPVISPNRIVVEVATQ
GNPPDQLN Run BLAST on NCBI transcript from alignment at sc0000635:68952..71795 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027591 ID=TCONS_00027591|Name=TCONS_00027591|organism=Clytia hemisphaerica|type=transcript|length=2844bp|location=Sequence derived from alignment at sc0000635:68952..71795 (Clytia hemisphaerica)
CTTTGATGTAGAAAGGAAATTTTCATTCGGCTGAGAGTTGAGAAAAGTAT
CATTTTGAGACTTATAAAATCAACATTTAAAACTGTTAAAAGTTAGGAGA
AAATATGGAGAAGTTTTTGACAACTGCGCTATCAAAGACATTGTATTTCA
CCGTTAACCCAATCATAGGAGGACTGATCGTCATCGTCAATGGTGCACAA
TTTGTCTACATCCTAcgtaaatacaaaagaaaacaaatcacAACCTCTCT
AATGTTTTTAGTAAGTTCTGTCATCGTGAACATGCTGTTTGGTCTTAATA
TCATCATTGTTAAAATCATGGACAAAGAAATTGGTATCAAGATGAAAAAT
AACATAATGGCATTGAAAACATGGCGTTTCTTCAAAGGACAAATGATCAA
TATAGTTTTGCACGTCTCAATATTGAACATTCTATTGGTGACATTTGAGA
AGATGTTGGCAGTCACTGCACCTTTTCTCTTACGTCGATTCACTAAGAAA
ATTCGATGGCTTGTTTTATTGTCGGTTTGGATCACCTCAATCACCGGAGT
GGCAATCTCATACCATTATATGAAAACGTACAAAAGTATTATTTACTTGA
TCAATGTTGCTGGTGTTCTTTTTTCAATGGTTGGACAGTCAATTTTCTTC
GTTCTCATCCTTCGAAGTATctacaaatcaaaacaaatgagtACACGATT
TGATTCTCAAAACAAAGAACGTTCCTTAACAGCAAACGAAAAGAAATTCA
TCAGTCTAGTCTTCAAGACTTATGTCTGTTTGTTTGTGTTTTGGACACCT
TACACGGTGTTTGCTTTAATGAGATTAACAAACTCTATTGGATTTGATTA
CGACTTCAGTGTTTATGTCCACTCAACGGCTTTCGTAAATTCTTTGGTCA
GCCCTCTCATCTTTTTCTATCATCATTTGAAGAAGTCCATCTCACGTCTC
TCCAAACGAAGCAAATCGGACCGTCTTACTTCTATCAGCACTACTGAGCA
TTCATCCGTCCCGCTTACAAAAGAAACTGCAATCTAGGACGAAAATCTAC
TTACTTCATCATCTTAACAACAGAGGAAAGAGATTCATTTAATGATTTTA
TCCAAGGGTAATACTTATTGCAGTCAATAATTTCAATATATCATAAACTA
ATAATGAAGTTAcacttttaagatttttaaataaCATCTTATACGAGGAA
TAAAAATGCGTATAATTTAACAATAAATTGAGAATGTTATAACTCCTGAT
CCATCACCTCTACTTATTCGAAAAGCAACCGGCCAAGCGACCTTTTTTCC
GATGCATTCTGAGAGCTAGAagttttgatctgttctgattaaaGCGTTTT
AGACTAATCAGTTAGTAATGCTATAAATTTTCAGTATATTTCttgacaaa
aaagtttttcctttcAGGACACAACCAACAGTAGAAATAGCAATTAGTTT
AGTGAGATATATTGCAATAAAGGTTTTTTTAGAATTAAGTAAGGTTCTCA
TAAATTATATTTTAGCTACAAGATGAATAATTTCACTCGTTATAAGGTTA
ATGTTAAACATTCTTTAATTGAGTTGATCTGGCGGATTGCCTTGAGTAGC
AACTTCAACAACAATTCGGTTTGGTGAGATCACCGGCTCTGGAGTTTCTT
CATCCTTTGTTTTATCTTCTGGTTGATTATATGGTGTGTCTGATGAATCA
ACAGCTTTGGGTGTAATACCCGTTGAACCTGTTTGATTACTTGAAGGATC
TGTACTTGATTCTGCCGGGCTTTTTCCTTGAGCAAGGCGCTTGATACGCT
TATAGATGGACTTCTTCAAATGATGGTAGAAAAAGATGAGAGGGCTGACC
AAAGAATTTAGGAAGGCCGTTGAGTGGACATAAACACTGAAGTCGTAATC
AAATCCAATAGAGTTTGTTAATCTCATTAAAGCAAACACAGTGTAAGGTG
TCCAAAACACAAACAAACAGACATAAGTCTTGAAGACTAGACTGATAAAT
CTCTTTTCATTGGCTGTTAAGGAACGTTCTTTGTTTTGAGAATCGAATTG
TTTgctcatttgttttgatttgtagATACTTCGAAGGATGAGAGCGAAGA
AAATTGACTGTCCAACCATTGAAAAAAGAACACCAGCAACATTGATCAAG
TAAATAATACTTTTGTATGTTTTCATATAATGGTATGAGATTGCCACTCC
GGTGATTGAGGTGATCCAAACCAACAATAAAACAAGCCATCGAATTTTCT
TAGTGAATCGACGTAAGAGAAAAGGTGCAGTAACTGCCAACATCTTCTCA
AATGTCACTAATAGAATGTTCAATATTGAGACGTGCAAAACTATATTGAT
CATTTGTCCTTTGAAGAAACGCCATGTTTTCAAGGCCATTATGTTATTTT
TCATCTCGGTACCAAGTTCTTTGTCCATGATTTTGACGATGATGATATTA
AGACCAAACAGTATGTTCACGATGACAGAACTTACTAAAAACATTAGAGA
GCTCATCTTTCTTCGAAGATTTGCTTTCGATAAGATGTAGCCAAGCTCTG
ATGCATTGGATAAGACAATCAATGCCCCGATGACTGGATTGATATCCATA
TACAAAGCTTTGGAAAATGtggtttttaagaatttttccaTTATTTGCAA
TGCGAAAAGTCCTCTCCTTGAGTGACGGCGATGCTATGATAGTATGTTTT
GACGCAGCCTTTTTATACGATGGCGAGACGATTACGATATGAGTGTTTTC
CTTTTAAATAGAGTATTATCCCCGAAACGGACAATTAAAGTTAAAAATAC
TGCCTTTGTTCTTCTTCGAtgaattcacaaaaaaaaacttaccc Coding sequence (CDS) from alignment at sc0000635:68952..71795 >TCONS_00027591 ID=TCONS_00027591|Name=TCONS_00027591|organism=Clytia hemisphaerica|type=CDS|length=1077bp|location=Sequence derived from alignment at sc0000635:68952..71795 (Clytia hemisphaerica)
TTAATTGAGTTGATCTGGCGGATTGCCTTGAGTAGCAACTTCAACAACAA
TTCGGTTTGGTGAGATCACCGGCTCTGGAGTTTCTTCATCCTTTGTTTTA
TCTTCTGGTTGATTATATGGTGTGTCTGATGAATCAACAGCTTTGGGTGT
AATACCCGTTGAACCTGTTTGATTACTTGAAGGATCTGTACTTGATTCTG
CCGGGCTTTTTCCTTGAGCAAGGCGCTTGATACGCTTATAGATGGACTTC
TTCAAATGATGGTAGAAAAAGATGAGAGGGCTGACCAAAGAATTTAGGAA
GGCCGTTGAGTGGACATAAACACTGAAGTCGTAATCAAATCCAATAGAGT
TTGTTAATCTCATTAAAGCAAACACAGTGTAAGGTGTCCAAAACACAAAC
AAACAGACATAAGTCTTGAAGACTAGACTGATAAATCTCTTTTCATTGGC
TGTTAAGGAACGTTCTTTGTTTTGAGAATCGAATTGTTTgctcatttgtt
ttgatttgtagATACTTCGAAGGATGAGAGCGAAGAAAATTGACTGTCCA
ACCATTGAAAAAAGAACACCAGCAACATTGATCAAGTAAATAATACTTTT
GTATGTTTTCATATAATGGTATGAGATTGCCACTCCGGTGATTGAGGTGA
TCCAAACCAACAATAAAACAAGCCATCGAATTTTCTTAGTGAATCGACGT
AAGAGAAAAGGTGCAGTAACTGCCAACATCTTCTCAAATGTCACTAATAG
AATGTTCAATATTGAGACGTGCAAAACTATATTGATCATTTGTCCTTTGA
AGAAACGCCATGTTTTCAAGGCCATTATGTTATTTTTCATCTCGGTACCA
AGTTCTTTGTCCATGATTTTGACGATGATGATATTAAGACCAAACAGTAT
GTTCACGATGACAGAACTTACTAAAAACATTAGAGAGCTCATCTTTCTTC
GAAGATTTGCTTTCGATAAGATGTAGCCAAGCTCTGATGCATTGGATAAG
ACAATCAATGCCCCGATGACTGGATTGATATCCATATACAAAGCTTTGGA
AAATGtggtttttaagaatttttccaT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027591-exon-sc0000635-1491911889:68952..71795 | TCONS_00027591-exon-sc0000635-1491911889:68952..71795 | Clytia hemisphaerica | exon |
| TCONS_00027591-exon-sc0000635-1510915933:68952..71795 | TCONS_00027591-exon-sc0000635-1510915933:68952..71795 | Clytia hemisphaerica | exon |
| TCONS_00027591-exon-sc0000635-1575043694:68952..71795 | TCONS_00027591-exon-sc0000635-1575043694:68952..71795 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000635 | supercontig | sc0000635:68952..71795 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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