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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027584 ID=TCONS_00027584|Name=TCONS_00027584|organism=Clytia hemisphaerica|type=transcript|length=2468bp
GGGTAGTGATTGACATTTTCGAAATCTGGATTTGATActcattatttttg
atttccttaTTTCTAAATAATTAGTACAAAAATTCTATTTACAATGCTCA
ATGAAAATTTGGCTTAATAATATAAAAATTGGTGATATTTCTTGTAAAAC
TATAGCctaatgtataattttcaaatgtttctttTCCTTTTAGGTAAGAG
TGCTTAGATCTCGAAGGTTCTACGGCTTTAAGAACTTTCGGATTGAATTT
CCTTAAGTAAATTTATAGTTTAGTGTTTAGTCACATCTATCTAAACTAAT
GGGTAACTAGCTTTCAATGCGATACCACACTGGTCATTACGGTTTCGTGC
CATTTTGATGTATCCTTGATCTCCCCAATAAGTGTCCCAGCTATTTTTCA
CCAACCAATAGTCTTGTCCATTTTCTGTTCCATAACCAACAACCAAGACA
GCATGATCAAGATTTGCCAGTGTGTTGCCACAGGTTGGCTCGATGTAAAC
ACCACTGCGATAACTCATAAATGAAGGTTTTGTAGCGTCAATTGCTACGG
AGATAGGACCGATGGTTGCGACAGCTTGTTTCAATGCGTTTTCATCACCA
GATGGGATATCAACGAAACCTGTGTCAGTAGCTGTGTTGTATTGAGCGTT
ATAGTAGCAGTATCCAAGCTCCTATGGTCAAATAAGAAACGAATATTGga
tttataagaaatttcttttattaATCTTGGATTTATTCCTGAcatatttg
aatatttcattgtttttttgggTCCAGATTGATAAGATAAGCGGAGAAAC
CCCGGGAACGTTGTGGCACCTTCCACTTCCTtcagatagatagatagaca
gctaaagaaaaaaagagccttcgggtcgctCTCGGCTATACTAATGTAAA
TGTATGTACAGATTTTCATCCACTGATTTGAAGAGACAAATTTTACTCAC
TCTAGCGTAGTATGGGTATCCTTGTTCGCTGTCAATTCCTTTGTTATCTC
TGATATATTTGAAGGCCCAGTCCATCCAGCCACCATGGCATCCTTGGTTT
CCGTATGATTTTGAGCAATCCACCAAGTTTTGTTCACTTAGGCTTGGTAA
AGTTCCTGTCTTTTTGAATATTTGACCCTCCAATGAACCAGTCTGTAGAT
GGAAAGTGTAAAGTTGGCAATTTGGATTTAGATAccactgtgtcacagac
ccgctgggagcaaagccccactggaaagattgacaaaaatttcgtcccga
tGTGActttagaatttcagcccctcttggaaatcaacttttttttcatcc
ccattcgaaattcaatgtttaaaaattgcacttcaaaaccatcgctactg
aattttttaaccttggaacaaaggaatttttatccccaatgggatttcaa
taggaatttttatccccaatgagaaaaaaagttgcaccggagctgtgaga
caggggtgtatatagGTTTGAATTTGAATGCCCTCGAGCTGTACAACAAG
TTCTGCTGACTTCAAAACTTTTACATATTTTATGAGCAAAAAGCCTAGAA
AGTTCAATTTTTACGGTAACCTTCAATTGGCTCGCATTTGCTAATTAGTC
AAGTAGAATTGCAAAACTACCcagacaaaaatggtgtagagatgaaattt
tgcacaaaggtcCAGGACTatgtcaggaatcaccaaaaaaaaaaccccac
CCCCACgaagatgggaacaccctcaaatccataatggcggacatggtACT
TTTGTCTACAATTAATCAAGGGTGGACCCTTGATAActgatttttaatgg
ttttcaaatgtcaaaaataactagacAGGGAGATTCCTCTCGATGAGTAG
ATAAAGAgaatggggtcacttttgaaatttggaccacgTAATCCCGAGAT
ATGAcctctaaagtccaaaaaatgacgattttgatgacgtcagcattttt
actgaGAGCGATAAATTGGAACAAAATTTCAATCTCTAAACCATTTTTCT
CCCGGTTTTGGCAGTTTATgacctaattctacctgactaaaTGTCTTTGT
CTCGGACACTTTCACAAGTAGCGTTATCCGAAACACATTTGACCCTTTGC
AGGCAGGAAGGATGTAGGAATTATGATAATAGTACATGAGACTGTATTTG
ATCATCTTATCCCAGCtgccacacaacgttgtttcaacgtttgtttaacg
ttcacaacgtccatataacgttaaatgaacgttaaaacaacgttgtgtgc
cagctgggatgcaACTTACAGTGGAGAAAGACCAACATGATCCACATTGT
CCTTGGTTCTTAATGGGTGTGACGTATCCTTGTTGTCTCCAGTCAACTTC
GTCAGGGATTTCAACATTTGAAGGTGGTAAGAATGTTGAGCCTTCTGATT
TATCAGCTGTGTAATTGGCTGGTAGTTTGTAACATCCACCCATTTGTTGA
CGGAACTCTTCGTGTGTC Run BLAST on NCBI transcript from alignment at sc0000635:171337..173877- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027584 ID=TCONS_00027584|Name=TCONS_00027584|organism=Clytia hemisphaerica|type=transcript|length=2541bp|location=Sequence derived from alignment at sc0000635:171337..173877- (Clytia hemisphaerica)
GGGTAGTGATTGACATTTTCGAAATCTGGATTTGATACTCATTATTTTTG
ATTTCCTTATTTCTAAATAATTAGTACAAAAATTCTATTTACAATGCTCA
ATGAAAATTTGGCTTAATAATATAAAAATTGGTGATATTTCTTGTAAAAC
TATAGCCTAATGTATAATTTTCAAATGTTTCTTTTCCTTTTAGGTAAGAG
TGCTTAGATCTCGAAGGTTCTACGGCTTTAAGAACTTTCGGATTGAATTT
CCTTAAGTAAATTTATAGTTTAGTGTTTAGTCACATCTATCTAAACTAAT
GGGTAACTAGCTTTCAATGCGATACCACACTGGTCATTACGGTTTCGTGC
CATTTTGATGTATCCTTGATCTCCCCAATAAGTGTCCCAGCTATTTTTCA
CCAACCAATAGTCTTGTCCATTTTCTGTTCCATAACCAACAACCAAGACA
GCATGATCAAGATTTGCCAGTGTGTTGCCACAGGTTGGCTCGATGTAAAC
ACCACTGCGATAACTCATAAATGAAGGTTTTGTAGCGTCAATTGCTACGG
AGATAGGACCGATGGTTGCGACAGCTTGTTTCAATGCGTTTTCATCACCA
GATGGGATATCAACGAAACCTGTGTCAGTAGCTGTGTTGTATTGAGCGTT
ATAGTAGCAGTATCCAAGCTCCTATGGTCAAATAAGAAACGAATATTGGA
TTTATAAGAAATTTCTTTTATTAATCTTGGATTTATTCCTGACATATTTG
AATATTTCATTGTTTTTTTGGGTCCAGATTGATAAGATAAGCGGAGAAAC
CCCGGGAACGTTGTGGCACCTTCCACTTCCTTCAGATAGATAGATAGACA
GCTAAAGAAAAAAAGAGCCTTCGGGTCGCTCTCGGCTATACTAATGTAAA
TGTATGTACAGATTTTCATCCACTGATTTGAAGAGACAAATTTTACTCAC
TCTAGCGTAGTATGGGTATCCTTGTTCGCTGTCAATTCCTTTGTTATCTC
TGATATATTTGAAGGCCCAGTCCATCCAGCCACCATGGCATCCTTGGTTT
CCGTATGACTTTGAGCAATCCACCAAGTNATTTGAAGGCCCAGTCCATCC
AGCCACCATGGCATCCTTGGTTTCCGTATGATTTTGAGCAATCCACCAAG
TTTTGTTCACTTAGGCTTGGTAAAGTTCCTGTCTTTTTGAATATTTGACC
CTCCAATGAACCAGTCTGTAGATGGAAAGTGTAAAGTTGGCAATTTGGAT
TTAGATACCACTGTGTCACAGACCCGCTGGGAGCAAAGCCCCACTGGAAA
GATTGACAAAAATTTCGTCCCGATGTGACTTTAGAATTTCAGCCCCTCTT
GGAAATCAACTTTTTTTTCATCCCCATTCGAAATTCAATGTTTAAAAATT
GCACTTCAAAACCATCGCTACTGAATTTTTTAACCTTGGAACAAAGGAAT
TTTTATCCCCAATGGGATTTCAATAGGAATTTTTATCCCCAATGAGAAAA
AAAGTTGCACCGGAGCTGTGAGACAGGGGTGTATATAGGTTTGAATTTGA
ATGCCCTCGAGCTGTACAACAAGTTCTGCTGACTTCAAAACTTTTACATA
TTTTATGAGCAAAAAGCCTAGAAAGTTCAATTTTTACGGTAACCTTCAAT
TGGCTCGCATTTGCTAATTAGTCAAGTAGAATTGCAAAACTACCCAGACA
AAAATGGTGTAGAGATGAAATTTTGCACAAAGGTCCAGGACTATGTCAGG
AATCACCAAAAAAAAAACCCCACCCCCACGAAGATGGGAACACCCTCAAA
TCCATAATGGCGGACATGGTACTTTTGTCTACAATTAATCAAGGGTGGAC
CCTTGATAACTGATTTTTAATGGTTTTCAAATGTCAAAAATAACTAGACA
GGGAGATTCCTCTCGATGAGTAGATAAAGAGAATGGGGTCACTTTTGAAA
TTTGGACCACGTAATCCCGAGATATGACCTCTAAAGTCCAAAAAATGACG
ATTTTGATGACGTCAGCATTTTTACTGAGAGCGATAAATTGGAACAAAAT
TTCAATCTCTAAACCATTTTTCTCCCGGTTTTGGCAGTTTATGACCTAAT
TCTACCTGACTAAATGTCTTTGTCTCGGACACTTTCACAAGTAGCGTTAT
CCGAAACACATTTGACCCTTTGCAGGCAGGAAGGATGTAGGAATTATGAT
AATAGTACATGAGACTGTATTTGATCATCTTATCCCAGCTGCCACACAAC
GTTGTTTCAACGTTTGTTTAACGTTCACAACGTCCATATAACGTTAAATG
AACGTTAAAACAACGTTGTGTGCCAGCTGGGATGCAACTTACAGTGGAGA
AAGACCAACATGATCCACATTGTCCTTGGTTCTTAATGGGTGTGACGTAT
CCTTGTTGTCTCCAGTCAACTTCGTCAGGGATTTCAACATTTGAAGGTGG
TAAGAATGTTGAGCCTTCTGATTTATCAGCTGTGTAATTGGCTGGTAGTT
TGTAACATCCACCCATTTGTTGACGGAACTCTTCGTGTGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027584-exon-sc0000635-1575043694:172864..173877 | TCONS_00027584-exon-sc0000635-1575043694:172864..173877 | Clytia hemisphaerica | exon |
| TCONS_00027584-exon-sc0000635-1575043694:171337..172790 | TCONS_00027584-exon-sc0000635-1575043694:171337..172790 | Clytia hemisphaerica | exon |
| TCONS_00027584-exon-sc0000635-1510915933:172864..173877 | TCONS_00027584-exon-sc0000635-1510915933:172864..173877 | Clytia hemisphaerica | exon |
| TCONS_00027584-exon-sc0000635-1510915933:171337..172790 | TCONS_00027584-exon-sc0000635-1510915933:171337..172790 | Clytia hemisphaerica | exon |
| TCONS_00027584-exon-sc0000635-1491911889:172864..173877 | TCONS_00027584-exon-sc0000635-1491911889:172864..173877 | Clytia hemisphaerica | exon |
| TCONS_00027584-exon-sc0000635-1491911889:171337..172790 | TCONS_00027584-exon-sc0000635-1491911889:171337..172790 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000635 | supercontig | sc0000635:171337..173877 - |
Blast
BLAST of TCONS_00027584 vs. Swiss-Prot (Human)
Match: CATL1 (Cathepsin L1 OS=Homo sapiens GN=CTSL PE=1 SV=2) HSP 1 Score: 144.436 bits (363), Expect = 2.282e-37 Identity = 72/126 (57.14%), Postives = 88/126 (69.84%), Query Frame = -1
Query: 294 CYYNAQYNTATDTGFVDIPSGDENALKQAVATIGPISVAIDATKPSFMSYRSGVYIEPTCGNTLANLDHAVLVVGYGTENGQ----DYWLVKNSWDTYWGDQGYIKMARNRNDQCGIALKASYPLV 659
C YN +Y+ A DTGFVDIP E AL +AVAT+GPISVAIDA SF+ Y+ G+Y EP C + ++DH VLVVGYG E+ + YWLVKNSW WG GY+KMA++R + CGIA ASYP V
Sbjct: 211 CKYNPKYSVANDTGFVDIPK-QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSE--DMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 333 HSP 2 Score: 96.2857 bits (238), Expect = 2.973e-21 Identity = 43/63 (68.25%), Postives = 54/63 (85.71%), Query Frame = -1
Query: 954 TGSLEGQIFKKTGTLPSLSEQNLVDCSKSYGNQGCHGGWMDWAFKYIRDNKGIDSEQGYPYYA 1142
TG+LEGQ+F+KTG L SLSEQNLVDCS GN+GC+GG MD+AF+Y++DN G+DSE+ YPY A
Sbjct: 144 TGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEA 206
The following BLAST results are available for this feature:
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