TCONS_00027565 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027565
Unique NameTCONS_00027565
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1058

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027565 ID=TCONS_00027565|Name=TCONS_00027565|organism=Clytia hemisphaerica|type=transcript|length=1058bp
cttagaaccacacccttccactgatacgcttcgcacccaaaacgcgttag
aacttagacccttcactgatacgcttcgcacccaaaacaccatagaacca
cacccttccactgatatgcttcgcacccaaaatgCGTTaggacctagacc
cttcactgatacgcttcgcacccaaaacgcgttagaacctagacccttca
ctgatacgcttcgcacccaaaacatcttagaaccacacccttccactgat
acgctccgcacccaaaacgcgttagaacctagacccttcaatgatacgct
tcgcacccaaaacaccataaaaccacacccttccactgatacgcttcNAA
AACCTGGAATATGGATAGTATCAATACAGACTAATTATATATCCAATGGG
AGGAAAGCTAGATAGGAGCTTTTTTCTTGAGGGAAGTGACAAGATCAACT
AACTGCAATCAGAACAGATATCAAGTCGTAATGAAGATAGagaagaaaaa
ttctaaaatcaaagTAACTAGAGTTACtttgatcaaaatcaaaatgaaga
tCGACAATGCCGCAGACGTTTGATTTATTGggaaaaaaaacatctacctT
TATTCAGAATCCAGCTGAAAGATTTGAGTAAACATGATCGATAGTTACCT
GGACCAGATAAGCATAGATTTAAATGACACGGGTGTTTTGTTACGAGCCT
GAGTTGGGCAAAAGTCAACGTTTGAAGTGATATATGTCTGTGAACAAGTA
CCCACTNCCTGAGTTGGGCAAAAGTCAACGTTTGAAGTGATATATGTCTG
TGAACAAGTACCCACTCCACTACTTGGACAACCAGGAATTGAAGCTTTGT
TACAATCATATCAGGAATTAACTTGGTGGAAGACAAAAAGTAGaacaaaa
gtaaaattataAACAGTGAGAATgactttgtaaaatattttaaagagaTT
TTGGGGGTCTAGGGCAAGTGAAAGGATTCCACATTATCTGCACCGAGAAA
AGTTCAAATTCCGGTACTGGAACCATTGCGAATGGAGATTGATCGCATGC
TGCAGATG
Run BLAST on NCBI

protein sequence of TCONS_00027565-protein

>TCONS_00027565-protein ID=TCONS_00027565-protein|Name=TCONS_00027565-protein|organism=Clytia hemisphaerica|type=polypeptide|length=137bp
LEPHPSTDTLRTQNALELRPFTDTLRTQNTIEPHPSTDMLRTQNALGPRP
FTDTLRTQNALEPRPFTDTLRTQNILEPHPSTDTLRTQNALEPRPFNDTL
RTQNTIKPHPSTDTLXKPGIWIVSIQTNYISNGRKAR
Run BLAST on NCBI

transcript from alignment at sc0000632:188587..189644

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027565 ID=TCONS_00027565|Name=TCONS_00027565|organism=Clytia hemisphaerica|type=transcript|length=1058bp|location=Sequence derived from alignment at sc0000632:188587..189644 (Clytia hemisphaerica)
CATCTGCAGCATGCGATCAATCTCCATTCGCAATGGTTCCAGTACCGGAA
TTTGAACTTTTCTCGGTGCAGATAATGTGGAATCCTTTCACTTGCCCTAG
ACCCCCAAAAtctctttaaaatattttacaaagtcATTCTCACTGTTtat
aattttacttttgttCTACTTTTTGTCTTCCACCAAGTTAATTCCTGATA
TGATTGTAACAAAGCTTCAATTCCTGGTTGTCCAAGTAGTGGAGTGGGTA
CTTGTTCACAGACATATATCACTTCAAACGTTGACTTTTGCCCAACTCAG
GNAGTGGGTACTTGTTCACAGACATATATCACTTCAAACGTTGACTTTTG
CCCAACTCAGGCTCGTAACAAAACACCCGTGTCATTTAAATCTATGCTTA
TCTGGTCCAGGTAACTATCGATCATGTTTACTCAAATCTTTCAGCTGGAT
TCTGAATAAaggtagatgttttttttccCAATAAATCAAACGTCTGCGGC
ATTGTCGatcttcattttgattttgatcaaaGTAACTCTAGTTActttga
ttttagaatttttcttctCTATCTTCATTACGACTTGATATCTGTTCTGA
TTGCAGTTAGTTGATCTTGTCACTTCCCTCAAGAAAAAAGCTCCTATCTA
GCTTTCCTCCCATTGGATATATAATTAGTCTGTATTGATACTATCCATAT
TCCAGGTTTTNgaagcgtatcagtggaagggtgtggttttatggtgtttt
gggtgcgaagcgtatcattgaagggtctaggttctaacgcgttttgggtg
cggagcgtatcagtggaagggtgtggttctaagatgttttgggtgcgaag
cgtatcagtgaagggtctaggttctaacgcgttttgggtgcgaagcgtat
cagtgaagggtctaggtcctAACGcattttgggtgcgaagcatatcagtg
gaagggtgtggttctatggtgttttgggtgcgaagcgtatcagtgaaggg
tctaagttctaacgcgttttgggtgcgaagcgtatcagtggaagggtgtg
gttctaag

Coding sequence (CDS) from alignment at sc0000632:188587..189644

>TCONS_00027565 ID=TCONS_00027565|Name=TCONS_00027565|organism=Clytia hemisphaerica|type=CDS|length=414bp|location=Sequence derived from alignment at sc0000632:188587..189644 (Clytia hemisphaerica)
CTATCTAGCTTTCCTCCCATTGGATATATAATTAGTCTGTATTGATACTA
TCCATATTCCAGGTTTTNgaagcgtatcagtggaagggtgtggttttatg
gtgttttgggtgcgaagcgtatcattgaagggtctaggttctaacgcgtt
ttgggtgcggagcgtatcagtggaagggtgtggttctaagatgttttggg
tgcgaagcgtatcagtgaagggtctaggttctaacgcgttttgggtgcga
agcgtatcagtgaagggtctaggtcctAACGcattttgggtgcgaagcat
atcagtggaagggtgtggttctatggtgttttgggtgcgaagcgtatcag
tgaagggtctaagttctaacgcgttttgggtgcgaagcgtatcagtggaa
gggtgtggttctaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015543XLOC_015543Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027565-proteinTCONS_00027565-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027565-exon-sc0000632-1491911889:188587..189644TCONS_00027565-exon-sc0000632-1491911889:188587..189644Clytia hemisphaericaexon
TCONS_00027565-exon-sc0000632-1510915933:188587..189644TCONS_00027565-exon-sc0000632-1510915933:188587..189644Clytia hemisphaericaexon
TCONS_00027565-exon-sc0000632-1575043694:188587..189644TCONS_00027565-exon-sc0000632-1575043694:188587..189644Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000632supercontigsc0000632:188587..189644 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.04034	1.01874	0.804341	1.06466	1.16472	1.46191	2.90113	2.65538	2.15525	2.60773	2.05487	2.59188	1.66982	2.06601	1.58156	2.01989	1.15445	1.63981	2.70252	4.19177	2.1446	2.81205	2.34773	2.54809	2.36572	2.99033	3.41095	4.19352	1.18118	0.605018
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027565 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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