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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027564 ID=TCONS_00027564|Name=TCONS_00027564|organism=Clytia hemisphaerica|type=transcript|length=1115bp
TGTGAGCTCATCGGAAAGCGctttaaaagaagaaaacttACGTCTGAAAG
AGGAGAATGGATCACTGAAACATCAGATAGAAATCACCAACGTAAAGATG
CAGCAAAACGGACAAAACAACCTTGACAATGAGAAAGTGAAGGAAATTGA
CTCACTCAAGAACGAAATCAAATATTTGAAGGACCAATTTCAAGCTCTGG
AAAAGGCAACCCCAAAAGGTGATTTGGAAAAGAACGTTTTAGCTCTTGGT
GAAGAAATGGATAGATTGAAAACTCAATCCAATGATACCATTAAACAAAT
TCAAACACAAAAGAGCCAATCAGATGCTGCATTCCAAACTCTAAGGAAAG
AATGCGAAGATTTAAAACTTCATTTAAATATCCTCGACCAATCACGCAAC
AACGATGATGATATGAAAAAGGAGGTCCAAACTCTTAGAAACGAGTTCGC
GATTTTCAATGCCAACATCGAGCGAAAACTGTCGCTGGTAAAAATTCCTG
ATCGATTTTTCGAAGGAGCTGAAAGGTTTTTGGTGAATTACAATACAGAT
GACGGAGATTTTTCCGGTGAAGATTATAAATTGTGGTATGAAGATATGTC
ACGTTCTATGGAAAATCGTAAGCAGTATGCCAATGAAAAGTTGGTCTTGA
TTcgtaaagaaacaaaaataactTCATCTCTGTGGTTTGCATCGAAACCA
AAAGGTGTTGAACATGGTGAGAGAGATAATAATTTGATAATTGAAGGGTT
GTATGAAAAAACACCTGCTGATGCAAACGTTTTTCTTCTCCATCCAAGCG
ATTATAGAAAGTGCATGAAGATGGTATTCTGTGATACTAGCACTTATATC
GGATGGTGGCATTCTGGCGGAAAGGCAAAAGATTTCAGTTTTGGAGATAC
TTCTTCAGTTATTATGCTTGCTGAATTTAAATAACGtacaggtttttttt
ataagaacatccaaaaattttgaagcctttggatgctcttaactttttaa
gttttaagcctaaaaatgttcttaaactgtttttattttcacatgATCTT
ATCTTGATCATATCTTATCttataacatgttcttattattttcaccattt
tgtgagtgtttttgt Run BLAST on NCBI protein sequence of TCONS_00027564-protein >TCONS_00027564-protein ID=TCONS_00027564-protein|Name=TCONS_00027564-protein|organism=Clytia hemisphaerica|type=polypeptide|length=310bp
VSSSESALKEENLRLKEENGSLKHQIEITNVKMQQNGQNNLDNEKVKEID
SLKNEIKYLKDQFQALEKATPKGDLEKNVLALGEEMDRLKTQSNDTIKQI
QTQKSQSDAAFQTLRKECEDLKLHLNILDQSRNNDDDMKKEVQTLRNEFA
IFNANIERKLSLVKIPDRFFEGAERFLVNYNTDDGDFSGEDYKLWYEDMS
RSMENRKQYANEKLVLIRKETKITSSLWFASKPKGVEHGERDNNLIIEGL
YEKTPADANVFLLHPSDYRKCMKMVFCDTSTYIGWWHSGGKAKDFSFGDT
SSVIMLAEFK Run BLAST on NCBI transcript from alignment at sc0000632:175370..176484 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027564 ID=TCONS_00027564|Name=TCONS_00027564|organism=Clytia hemisphaerica|type=transcript|length=1115bp|location=Sequence derived from alignment at sc0000632:175370..176484 (Clytia hemisphaerica)
acaaaaacactcacaaaatggtgaaaataataagaacatgttataaGATA
AGATATGATCAAGATAAGATcatgtgaaaataaaaacagtttaagaacat
ttttaggcttaaaacttaaaaagttaagagcatccaaaggcttcaaaatt
tttggatgttcttataaaaaaaacctgtaCGTTATTTAAATTCAGCAAGC
ATAATAACTGAAGAAGTATCTCCAAAACTGAAATCTTTTGCCTTTCCGCC
AGAATGCCACCATCCGATATAAGTGCTAGTATCACAGAATACCATCTTCA
TGCACTTTCTATAATCGCTTGGATGGAGAAGAAAAACGTTTGCATCAGCA
GGTGTTTTTTCATACAACCCTTCAATTATCAAATTATTATCTCTCTCACC
ATGTTCAACACCTTTTGGTTTCGATGCAAACCACAGAGATGAagttattt
ttgtttctttacgAATCAAGACCAACTTTTCATTGGCATACTGCTTACGA
TTTTCCATAGAACGTGACATATCTTCATACCACAATTTATAATCTTCACC
GGAAAAATCTCCGTCATCTGTATTGTAATTCACCAAAAACCTTTCAGCTC
CTTCGAAAAATCGATCAGGAATTTTTACCAGCGACAGTTTTCGCTCGATG
TTGGCATTGAAAATCGCGAACTCGTTTCTAAGAGTTTGGACCTCCTTTTT
CATATCATCATCGTTGTTGCGTGATTGGTCGAGGATATTTAAATGAAGTT
TTAAATCTTCGCATTCTTTCCTTAGAGTTTGGAATGCAGCATCTGATTGG
CTCTTTTGTGTTTGAATTTGTTTAATGGTATCATTGGATTGAGTTTTCAA
TCTATCCATTTCTTCACCAAGAGCTAAAACGTTCTTTTCCAAATCACCTT
TTGGGGTTGCCTTTTCCAGAGCTTGAAATTGGTCCTTCAAATATTTGATT
TCGTTCTTGAGTGAGTCAATTTCCTTCACTTTCTCATTGTCAAGGTTGTT
TTGTCCGTTTTGCTGCATCTTTACGTTGGTGATTTCTATCTGATGTTTCA
GTGATCCATTCTCCTCTTTCAGACGTaagttttcttcttttaaagCGCTT
TCCGATGAGCTCACA Coding sequence (CDS) from alignment at sc0000632:175370..176484 >TCONS_00027564 ID=TCONS_00027564|Name=TCONS_00027564|organism=Clytia hemisphaerica|type=CDS|length=933bp|location=Sequence derived from alignment at sc0000632:175370..176484 (Clytia hemisphaerica)
TTATTTAAATTCAGCAAGCATAATAACTGAAGAAGTATCTCCAAAACTGA
AATCTTTTGCCTTTCCGCCAGAATGCCACCATCCGATATAAGTGCTAGTA
TCACAGAATACCATCTTCATGCACTTTCTATAATCGCTTGGATGGAGAAG
AAAAACGTTTGCATCAGCAGGTGTTTTTTCATACAACCCTTCAATTATCA
AATTATTATCTCTCTCACCATGTTCAACACCTTTTGGTTTCGATGCAAAC
CACAGAGATGAagttatttttgtttctttacgAATCAAGACCAACTTTTC
ATTGGCATACTGCTTACGATTTTCCATAGAACGTGACATATCTTCATACC
ACAATTTATAATCTTCACCGGAAAAATCTCCGTCATCTGTATTGTAATTC
ACCAAAAACCTTTCAGCTCCTTCGAAAAATCGATCAGGAATTTTTACCAG
CGACAGTTTTCGCTCGATGTTGGCATTGAAAATCGCGAACTCGTTTCTAA
GAGTTTGGACCTCCTTTTTCATATCATCATCGTTGTTGCGTGATTGGTCG
AGGATATTTAAATGAAGTTTTAAATCTTCGCATTCTTTCCTTAGAGTTTG
GAATGCAGCATCTGATTGGCTCTTTTGTGTTTGAATTTGTTTAATGGTAT
CATTGGATTGAGTTTTCAATCTATCCATTTCTTCACCAAGAGCTAAAACG
TTCTTTTCCAAATCACCTTTTGGGGTTGCCTTTTCCAGAGCTTGAAATTG
GTCCTTCAAATATTTGATTTCGTTCTTGAGTGAGTCAATTTCCTTCACTT
TCTCATTGTCAAGGTTGTTTTGTCCGTTTTGCTGCATCTTTACGTTGGTG
ATTTCTATCTGATGTTTCAGTGATCCATTCTCCTCTTTCAGACGTaagtt
ttcttcttttaaagCGCTTTCCGATGAGCTCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027564-exon-sc0000632-1491911889:175370..176484 | TCONS_00027564-exon-sc0000632-1491911889:175370..176484 | Clytia hemisphaerica | exon |
| TCONS_00027564-exon-sc0000632-1510915933:175370..176484 | TCONS_00027564-exon-sc0000632-1510915933:175370..176484 | Clytia hemisphaerica | exon |
| TCONS_00027564-exon-sc0000632-1575043694:175370..176484 | TCONS_00027564-exon-sc0000632-1575043694:175370..176484 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000632 | supercontig | sc0000632:175370..176484 . |
Blast
The following BLAST results are available for this feature:
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