TCONS_00027562 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027562
Unique NameTCONS_00027562
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length399

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027562 ID=TCONS_00027562|Name=TCONS_00027562|organism=Clytia hemisphaerica|type=transcript|length=399bp
GTATGGCTGCTCTAAACATAGCATCATGACATACCaaatgaaagctcttt
ttacgccctttttgggcgtctaagtcaataccgccttttttcCCCAGGAT
TTCTtaatatgacgtaattaaagatggtaaccaaagaagtggtattttca
aaaacattcacaTTTTGGAGGCAGTCAGCTGTGTTTTTGACATGGAAACT
AAGCTTATGtattgttttggattgaattatgatattattgaatgtttcat
ttcatttctcacATCTGGGAAAGCTTTGGAAGCCTATATTTTGGGTGAAA
GCAACAATTTGATTCTGCGAACTGATGTTTTCGAACAGTAAAACTTGTAc
atcgaaaaaaacttttcaaagtgatgGACTATAGACTTTGAATAAAGTT
Run BLAST on NCBI

transcript from alignment at sc0000632:168357..168755

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027562 ID=TCONS_00027562|Name=TCONS_00027562|organism=Clytia hemisphaerica|type=transcript|length=399bp|location=Sequence derived from alignment at sc0000632:168357..168755 (Clytia hemisphaerica)
AACTTTATTCAAAGTCTATAGTCcatcactttgaaaagtttttttcgatg
TACAAGTTTTACTGTTCGAAAACATCAGTTCGCAGAATCAAATTGTTGCT
TTCACCCAAAATATAGGCTTCCAAAGCTTTCCCAGATgtgagaaatgaaa
tgaaacattcaataatatcataattcaatccaaaacaataCATAAGCTTA
GTTTCCATGTCAAAAACACAGCTGACTGCCTCCAAAAtgtgaatgttttt
gaaaataccacttctttggttaccatctttaattacgtcatattaAGAAA
TCCTGGGgaaaaaaggcggtattgacttagacgcccaaaaagggcgtaaa
aagagctttcatttGGTATGTCATGATGCTATGTTTAGAGCAGCCATAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015540XLOC_015540Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027562-exon-sc0000632-1491911889:168357..168755TCONS_00027562-exon-sc0000632-1491911889:168357..168755Clytia hemisphaericaexon
TCONS_00027562-exon-sc0000632-1510915933:168357..168755TCONS_00027562-exon-sc0000632-1510915933:168357..168755Clytia hemisphaericaexon
TCONS_00027562-exon-sc0000632-1575043694:168357..168755TCONS_00027562-exon-sc0000632-1575043694:168357..168755Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000632supercontigsc0000632:168357..168755 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.581011	1.97695	3.56708	1.09323	7.54327	3.94655	6.91073	8.09972	0.730822	0.712693	1.92639	1.20612	1.98297	0.250876	0	0.892916	1.20248	0.947826	0	0	1.52702	2.87228	0	0.963163	0.300331	0.622802	7.20051	1.44354	1.74161	1.6386
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027562 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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