TCONS_00027521 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00027521
Unique Name	TCONS_00027521
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2988

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000631:171806..174793-

transcript sequence

>TCONS_00027521 ID=TCONS_00027521|Name=TCONS_00027521|organism=Clytia hemisphaerica|type=transcript|length=2988bp
tttagtttaataGACGAACTGTACAATGACGAACACGagtataaagaaaa
aatcaggtTTGTTCTAAATAAAGTAATTTGGCTTTTAAAAGGGGGGATTT
GATAAAAAGTTGTACTTAATGCAAAGAAGTTACTTCAATCGATCACGATA
CATGCTTCAAACACTTTCTAAAACAATTTCATAAACTAATCTGCAGTGAA
GGCAAGGTGGTCGGTGACTTTTGATATTGGTTGAATTTGGGGTGcagttt
tgtgctcgttggaATAATGTGTGTGACTGCGAGGTCTATTCATGAttagt
gtgcactcttttttcttttacctataactttcgAAGGAATTCTACAATCT
TTATAAAtgtggtatcgttggaaagatattagtgagtggaataatttgaa
ataaaaaaatattttaaaaaaatctgaaaatgaagatgaaaatgaagaag
aaaaagatgaagatcttgtagagaatgCTAtgactatcattttcactgga
gtgaatccttgatcatcgaaaaTAATCAGTGTGTTGTGGAGAATATAAcg
gttctggtgaatctgcgATATTCAACGATATTGTCAGACTTACCAAAGTT
ATAAAGATCTACTAGCATGAGCTGAAAAAGCACAAAGATGAGTAGAACTT
AATGAAAAGATTTTTAACAAATACAACGATGACCAGTTTTTCTCAAgttt
taataataatatttcCTTTTATCATCGCAAAGACCTTTAAAGCTCTGTCT
TTACTTTAACCACTGCCAACATTTCCCTATAAATCCCTCGTCATTGTAAG
ACCACACACTAACTTTCTCAGACTAAAGATTCCCGAACTGCTCTTTAAGG
CCTGACAAAATTGAGATGTTCAAATGAGAAATGTAAAGCGATCCTAATTC
GGGGCCGATGTATTTTCTCTTCCAGAGATCAACAACAGAGACAAGAAGAG
ACCATGAGATCAAGAAGAGGAActgaaagaagagagaaaaaacaatgatc
aaTTAAGGCGACAGATAGCTGAAATGGCGAGTGAACTTTATTgagataac
ttttttttttgattctgaTTCATCGTGTTTACCGTTATGAACTTGATTCT
TTATGTAAATGCTACTATTTCGTTATTTATATATTCTAAGCAACGACAAA
GATTCCCGAACTGCTCTTTAAGGCCTGACAAAATTGAGAAGTTCAAATGA
GAAATGTAAAGCGATCCTAATTCGGGGCCGATGTATTTTCTCTTCCAGAG
ATCAACAACAGACAAGAAGAGACCATGAGATCAAGAAGAGGAActgaaag
aagagagaaaaaacaatgatcaaTTAAGGCGACAGATAGCTGAAATGGTG
AGTGAACTTTATTgagataacttttttttttgattctgaTTCATCGTGTG
AACCGTTATGAACTTGATTCTTTATGTAAATGCTACTATTTCGTTATTTA
TATATTCTAAGCAACGACAAAGATTCCCGAACTGCTCTTTAAGGCCTGAC
AAAATTGAGATGTTCAAATGAGAAATGTAAAGCGATCCTAATACGAGCCG
ATGTATTTTCTCTTCCAGAGATCATTTTGAACTTGAGGCttccttgtttt
tatcttgttttAGTTGTTGTGATGAAAAAGTGGATCTTAAGTTCTTTGTT
TGTATTCAACAGATGCAGCAACAACAGCAATTGCAGCAATTGATgttgca
acaacaacaacaagttCAACGGACATCATCTGCTGTAAGCTGaaatttcg
tttttctttttttttccataAATGATTTTGTCCTAAAATTTTACTTTCTT
GTCTATGGTGGTCGAGGCGAGCCAATTTAACAATACACAAGTGTGTTTTT
ATTGCATAGTTGCCAACTTATGAGAATGGAAATGTGGGACAACGAGCGAG
CGGAGCGATAATACCAAAAGGATGTCCGAACTTACCTtaccaaatgtttt
taaatattgataattttgaaGTTACTGAAGAAATTAAGTCAGTTCAAAGT
GttatcttaaaaattaaaatggcaaCCAACTATGGCACCGGTGACTATGG
AGAAGAAATTGAAATAATCAACCAATTGAGAGTAAGTAACTTCTTTCATT
AAATTGAGTAAACAGATGGCACTGTAAAGTCACAGAAAAGATTGGTTGTT
ATTATAACGAGGAACAAGAAGTAACATCTTTTTTCCCCTTCAAAGTGtta
tcttaaaaattaaaatggcaaCTAACTATGGCACCGGTGACTATGGAGAA
AACTGAAATCATCAACTAACTAAGAGCTAAGTAAACTTCTTTCATTAAAT
TGAGTTTCATTGACATGTAAAGTCACAGAAAAGATTGGTTGTTATTATAA
CGAGGAACAAGAAGTAACATCCTTTTCTTCTCTTCAAAATGTTATCTTAT
ATAAATTTATTTGTTTAAAATGGCTTCAAATATGGAACAAAATGAACATG
AAACTATCAATCAATTAAGAGTAAGTAATTTCTTTCATCAAATTAAGCAA
GTAGATGACGCTGTAAAGTCGCAAAAAAGATTGGTTGTTACTATAACGAG
GAACAAGAAGTAACATCATTTtcttctcttcaaagttttatCTTAAAAAT
TTATCTTACAAACAAACAATGGCTTCAAATATGGAACAAAATGAACAAGA
AATAATCAACCAATTGAGAGTAAGTAATTTCTTTCATCAAATTAAGCAAG
TAGATGACGCTGTAAAGTCGCAAAAAGATTGGTTGTTACTATAACGAGGa
acaagaagtaacgagaagaAACCCCTGTCTCACCCAACCCCCGTGTCTAT
GGATTGCTTCAATCTCAgagaattggaaaaataatgaGTGGAATATTTTG
TGATAAAAGTTTTCGTGCTCGATAGGTATGctgtctttttttcttttgcc
taGCACTTTTTAACGAATTATTCAATCATGATAAATTTAATATTCTATTG
GAAAGACATTtgtaggccaaaaaaaaaagtagtcttgt

Run BLAST on NCBI

transcript from alignment at sc0000631:171806..174793-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00027521 ID=TCONS_00027521|Name=TCONS_00027521|organism=Clytia hemisphaerica|type=transcript|length=2988bp|location=Sequence derived from alignment at sc0000631:171806..174793- (Clytia hemisphaerica)
TTTAGTTTAATAGACGAACTGTACAATGACGAACACGAGTATAAAGAAAA
AATCAGGTTTGTTCTAAATAAAGTAATTTGGCTTTTAAAAGGGGGGATTT
GATAAAAAGTTGTACTTAATGCAAAGAAGTTACTTCAATCGATCACGATA
CATGCTTCAAACACTTTCTAAAACAATTTCATAAACTAATCTGCAGTGAA
GGCAAGGTGGTCGGTGACTTTTGATATTGGTTGAATTTGGGGTGCAGTTT
TGTGCTCGTTGGAATAATGTGTGTGACTGCGAGGTCTATTCATGATTAGT
GTGCACTCTTTTTTCTTTTACCTATAACTTTCGAAGGAATTCTACAATCT
TTATAAATGTGGTATCGTTGGAAAGATATTAGTGAGTGGAATAATTTGAA
ATAAAAAAATATTTTAAAAAAATCTGAAAATGAAGATGAAAATGAAGAAG
AAAAAGATGAAGATCTTGTAGAGAATGCTATGACTATCATTTTCACTGGA
GTGAATCCTTGATCATCGAAAATAATCAGTGTGTTGTGGAGAATATAACG
GTTCTGGTGAATCTGCGATATTCAACGATATTGTCAGACTTACCAAAGTT
ATAAAGATCTACTAGCATGAGCTGAAAAAGCACAAAGATGAGTAGAACTT
AATGAAAAGATTTTTAACAAATACAACGATGACCAGTTTTTCTCAAGTTT
TAATAATAATATTTCCTTTTATCATCGCAAAGACCTTTAAAGCTCTGTCT
TTACTTTAACCACTGCCAACATTTCCCTATAAATCCCTCGTCATTGTAAG
ACCACACACTAACTTTCTCAGACTAAAGATTCCCGAACTGCTCTTTAAGG
CCTGACAAAATTGAGATGTTCAAATGAGAAATGTAAAGCGATCCTAATTC
GGGGCCGATGTATTTTCTCTTCCAGAGATCAACAACAGAGACAAGAAGAG
ACCATGAGATCAAGAAGAGGAACTGAAAGAAGAGAGAAAAAACAATGATC
AATTAAGGCGACAGATAGCTGAAATGGCGAGTGAACTTTATTGAGATAAC
TTTTTTTTTTGATTCTGATTCATCGTGTTTACCGTTATGAACTTGATTCT
TTATGTAAATGCTACTATTTCGTTATTTATATATTCTAAGCAACGACAAA
GATTCCCGAACTGCTCTTTAAGGCCTGACAAAATTGAGAAGTTCAAATGA
GAAATGTAAAGCGATCCTAATTCGGGGCCGATGTATTTTCTCTTCCAGAG
ATCAACAACAGACAAGAAGAGACCATGAGATCAAGAAGAGGAACTGAAAG
AAGAGAGAAAAAACAATGATCAATTAAGGCGACAGATAGCTGAAATGGTG
AGTGAACTTTATTGAGATAACTTTTTTTTTTGATTCTGATTCATCGTGTG
AACCGTTATGAACTTGATTCTTTATGTAAATGCTACTATTTCGTTATTTA
TATATTCTAAGCAACGACAAAGATTCCCGAACTGCTCTTTAAGGCCTGAC
AAAATTGAGATGTTCAAATGAGAAATGTAAAGCGATCCTAATACGAGCCG
ATGTATTTTCTCTTCCAGAGATCATTTTGAACTTGAGGCTTCCTTGTTTT
TATCTTGTTTTAGTTGTTGTGATGAAAAAGTGGATCTTAAGTTCTTTGTT
TGTATTCAACAGATGCAGCAACAACAGCAATTGCAGCAATTGATGTTGCA
ACAACAACAACAAGTTCAACGGACATCATCTGCTGTAAGCTGAAATTTCG
TTTTTCTTTTTTTTTCCATAAATGATTTTGTCCTAAAATTTTACTTTCTT
GTCTATGGTGGTCGAGGCGAGCCAATTTAACAATACACAAGTGTGTTTTT
ATTGCATAGTTGCCAACTTATGAGAATGGAAATGTGGGACAACGAGCGAG
CGGAGCGATAATACCAAAAGGATGTCCGAACTTACCTTACCAAATGTTTT
TAAATATTGATAATTTTGAAGTTACTGAAGAAATTAAGTCAGTTCAAAGT
GTTATCTTAAAAATTAAAATGGCAACCAACTATGGCACCGGTGACTATGG
AGAAGAAATTGAAATAATCAACCAATTGAGAGTAAGTAACTTCTTTCATT
AAATTGAGTAAACAGATGGCACTGTAAAGTCACAGAAAAGATTGGTTGTT
ATTATAACGAGGAACAAGAAGTAACATCTTTTTTCCCCTTCAAAGTGTTA
TCTTAAAAATTAAAATGGCAACTAACTATGGCACCGGTGACTATGGAGAA
AACTGAAATCATCAACTAACTAAGAGCTAAGTAAACTTCTTTCATTAAAT
TGAGTTTCATTGACATGTAAAGTCACAGAAAAGATTGGTTGTTATTATAA
CGAGGAACAAGAAGTAACATCCTTTTCTTCTCTTCAAAATGTTATCTTAT
ATAAATTTATTTGTTTAAAATGGCTTCAAATATGGAACAAAATGAACATG
AAACTATCAATCAATTAAGAGTAAGTAATTTCTTTCATCAAATTAAGCAA
GTAGATGACGCTGTAAAGTCGCAAAAAAGATTGGTTGTTACTATAACGAG
GAACAAGAAGTAACATCATTTTCTTCTCTTCAAAGTTTTATCTTAAAAAT
TTATCTTACAAACAAACAATGGCTTCAAATATGGAACAAAATGAACAAGA
AATAATCAACCAATTGAGAGTAAGTAATTTCTTTCATCAAATTAAGCAAG
TAGATGACGCTGTAAAGTCGCAAAAAGATTGGTTGTTACTATAACGAGGA
ACAAGAAGTAACGAGAAGAAACCCCTGTCTCACCCAACCCCCGTGTCTAT
GGATTGCTTCAATCTCAGAGAATTGGAAAAATAATGAGTGGAATATTTTG
TGATAAAAGTTTTCGTGCTCGATAGGTATGCTGTCTTTTTTTCTTTTGCC
TAGCACTTTTTAACGAATTATTCAATCATGATAAATTTAATATTCTATTG
GAAAGACATTTGTAGGCCAAAAAAAAAAGTAGTCTTGT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_015512	XLOC_015512	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00027521-exon-sc0000631-1575043694:171806..174793	TCONS_00027521-exon-sc0000631-1575043694:171806..174793	Clytia hemisphaerica	exon
TCONS_00027521-exon-sc0000631-1510915933:171806..174793	TCONS_00027521-exon-sc0000631-1510915933:171806..174793	Clytia hemisphaerica	exon
TCONS_00027521-exon-sc0000631-1491911889:171806..174793	TCONS_00027521-exon-sc0000631-1491911889:171806..174793	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000631	supercontig	sc0000631:171806..174793 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.141885	0.17639	0.293054	0.305483	0.244065	0.301289	0.286248	0.322694	0.12145	0.162667	0.0776043	0.0855928	0.07848	0.153404	0.128393	0.14126	0.057502	0.0398743	0.122138	0.0724882	0.0639151	0.0760771	0.043913	0.0698763	0.223084	0.440384	0.0363031	0.0560569	0.0734685	0.0883123

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00027521 vs. Swiss-Prot (Human)

BLAST of TCONS_00027521 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00027521 (transcript) - C. hemisphaerica