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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027508 ID=TCONS_00027508|Name=TCONS_00027508|organism=Clytia hemisphaerica|type=transcript|length=918bp
aaaaaaattaaaaggcaATATCACAAAATGATGAACAATGCTTTACAAAC
ATACAATGGAGAATTATCTCTCATCACCAGACCCATGCCAAAAGTGACGT
CACCAAATGATGTTTTGATTAAAGTGACCCACGCTGGGGTTTGTGGAACT
GATTTATCCATCATTGCTGGTCGATTTGAAGCAGCAAAGAAAATTATACA
AGGTCACGAGTTCTCTGGTGTAGTTTCCGGTGTTGGTGCAAAAGTCAAAC
ATCTAAAGATTGGTGATAGAATTTGTGTCAACCCGTACAACTATTGTGGA
TCTTGTGCTTTCTGTGTGCGAGGCCAACCTCAATTTTGCGTTAAGGAAGC
CATGAAGACTGCCCTGGGTTACCAAAAAGATGGTGGTTTCCAGGAATACA
TTGTACTCCCAGGGCATTTATGTTTTCCACTACCGCCCACCATGCAGTTG
AGACAGTCAGTATTTTGCCAACCATTGTCAACCATTTTGAGAGGGTGGGA
TAACATGGGAAAAATTGCGTTGGATTCTAAAGTACTCATCGCTGGAGCAG
GTATGACAGACAAAATTTCATTCTTAGACGGTCGTTTTTGCCTTGGCTTG
TCTTACTAGCGAGTTTATGGGACTGTGAATTCTGCATTCAATGAGGCACG
ATACCCTATGGACCGTCCTTATATTTTCCGCTGGAAAAACAGATATCTAT
ATTTCTCCTCACTagatcgtttttggacctacctaaggtagtcctttaaa
ttaacccttgtccgttcgttcgttcgtccgttcgttcgtccgttcgttcg
tctgttgccagcttttctNttggacctacctaaggtagtcctttaaatta
acccttgtccgttcgttcgttcgtccgttcgttcgtccgttcgttcgtct
gttgccagcttttctcag Run BLAST on NCBI protein sequence of TCONS_00027508-protein >TCONS_00027508-protein ID=TCONS_00027508-protein|Name=TCONS_00027508-protein|organism=Clytia hemisphaerica|type=polypeptide|length=202bp
KKIKRQYHKMMNNALQTYNGELSLITRPMPKVTSPNDVLIKVTHAGVCGT
DLSIIAGRFEAAKKIIQGHEFSGVVSGVGAKVKHLKIGDRICVNPYNYCG
SCAFCVRGQPQFCVKEAMKTALGYQKDGGFQEYIVLPGHLCFPLPPTMQL
RQSVFCQPLSTILRGWDNMGKIALDSKVLIAGAGMTDKISFLDGRFCLGL
SY Run BLAST on NCBI transcript from alignment at sc0000631:328..1917- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027508 ID=TCONS_00027508|Name=TCONS_00027508|organism=Clytia hemisphaerica|type=transcript|length=1590bp|location=Sequence derived from alignment at sc0000631:328..1917- (Clytia hemisphaerica)
AAAAAAATTAAAAGGCAATATCACAAAATGATGAACAATGCTTTACAAAC
ATACAATGGAGAATTATCTCTCATCACCAGACCCATGCCAAAAGTGACGT
CACCAAATGATGTTTTGATTAAAGTGACCCACGCTGGGGTTTGTGGAACT
GATTTATCCATCATTGCTGGTCGATTTGAAGCAGCAAAGAAAATTATACA
AGGTCACGAGTTCTCTGGTGTAGTTTCCGGTGTTGGTGCAAAAGTCAAAC
ATCTAAAGATTGGTGATAGGTAACCTTTAATTTTTACATATTTTTATAAG
AACAAACAAAAGAAAGCTTCGATGGACAAAATACCAAGAACAAGTTAAGA
ACGTTAAGGCTTTGCAGATTGCAGTCTTTTAAACACCCAGTTTCTTAGGA
AATTCCGCTAAAATACTTGCAAGATTGGCAAGATGGTTGAACAAAGAACA
TTTCAAGAAGCTTTTTAGTTTTAATTAAATATTTCCTGTTCTAAAGCAGT
TTATAAACAGTGATAGTTTACGAAGTGTTAATATTTTATTGTATTTTTAA
GAAAATACCATGATCTTGATTTCAGAAATGCAAGCAGGGGGGACTAGAGG
AAAGGAACAAGGATATCAGTGAAGTTTAACAGAACTTTCATATTTATATA
ATATTAGTTCAGTCTGTATGCACCAATTTTTTTCTGAGAGCTAGATTGAG
AAGCAGAATCTAATTTTATAGAAGATTCTGCAGTAAGTTTGAAAAGGTAG
GATCGAAAATGTCTTAACAATGTTTGATGCACTCGAAGCGTTACCTCAGT
TGACATTCTAGCTCGGTGTTGACTGTTCTGAAGTAATATACTGGAATTTC
TGCTCTTAAGTTGGTATACATTTATATGTAAAACCAACATTAAATACATT
GGAAAATAAATCAAAACTTTTCAACTTTAACTTTATTTCAGAATTTGTGT
CAACCCGTACAACTATTGTGGATCTTGTGCTTTCTGTGTGCGAGGCCAAC
CTCAATTTTGCGTTAAGGAAGCCATGAAGACTGCCCTGGGTTACCAAAAA
GATGGTGGTTTCCAGGAATACATTGTACTCCCAGGGCATTTATGTTTTCC
ACTACCGCCCACCATGCAGTTGAGACAGTCAGTATTTTGCCAACCATTGT
CAACCATTTTGAGAGGGTGGGATAACATGGGAAAAATTGCGTTGGATTCT
AAAGTACTCATCGCTGGAGCAGGTATGACAGACAAAATTTCATTCTTAGA
CGGTCGTTTTTGCCTTGGCTTGTCTTACTAGCGAGTTTATGGGACTGTGA
ATTCTGCATTCAATGAGGCACGATACCCTATGGACCGTCCTTATATTTTC
CGCTGGAAAAACAGATATCTATATTTCTCCTCACTAGATCGTTTTTGGAC
CTACCTAAGGTAGTCCTTTAAATTAACCCTTGTCCGTTCGTTCGTTCGTC
CGTTCGTTCGTCCGTTCGTTCGTCTGTTGCCAGCTTTTCTNTTGGACCTA
CCTAAGGTAGTCCTTTAAATTAACCCTTGTCCGTTCGTTCGTTCGTCCGT
TCGTTCGTCCGTTCGTTCGTCTGTTGCCAGCTTTTCTCAG Coding sequence (CDS) from alignment at sc0000631:328..1917- >TCONS_00027508 ID=TCONS_00027508|Name=TCONS_00027508|organism=Clytia hemisphaerica|type=CDS|length=1218bp|location=Sequence derived from alignment at sc0000631:328..1917- (Clytia hemisphaerica)
AATTTGTGTCAACCCGTACAACTATTGTGGATCTTGTGCTTTCTGTGTGC
GAGGCCAACCTCAATTTTGCGTTAAGGAAGCCATGAAGACTGCCCTGGGT
TACCAAAAAGATGGTGGTTTCCAGGAATACATTGTACTCCCAGGGCATTT
ATGTTTTCCACTACCGCCCACCATGCAGTTGAGACAGTCAGTATTTTGCC
AACCATTGTCAACCATTTTGAGAGGGTGGGATAACATGGGAAAAATTGCG
TTGGATTCTAAAGTACTCATCGCTGGAGCAGGTATGACAGACAAAATTTC
ATTCTTAGACGGTCGTTTTTGCCTTGGCTTGTCTTACTAGAAAAAAATTA
AAAGGCAATATCACAAAATGATGAACAATGCTTTACAAACATACAATGGA
GAATTATCTCTCATCACCAGACCCATGCCAAAAGTGACGTCACCAAATGA
TGTTTTGATTAAAGTGACCCACGCTGGGGTTTGTGGAACTGATTTATCCA
TCATTGCTGGTCGATTTGAAGCAGCAAAGAAAATTATACAAGGTCACGAG
TTCTCTGGTGTAGTTTCCGGTGTTGGTGCAAAAGTCAAACATCTAAAGAT
TGGTGATAGAATTTGTGTCAACCCGTACAACTATTGTGGATCTTGTGCTT
TCTGTGTGCGAGGCCAACCTCAATTTTGCGTTAAGGAAGCCATGAAGACT
GCCCTGGGTTACCAAAAAGATGGTGGTTTCCAGGAATACATTGTACTCCC
AGGGCATTTATGTTTTCCACTACCGCCCACCATGCAGTTGAGACAGTCAG
TATTTTGCCAACCATTGTCAACCATTTTGAGAGGGTGGGATAACATGGGA
AAAATTGCGTTGGATTCTAAAGTACTCATCGCTGGAGCAGGTATGACAGA
CAAAATTTCATTCTTAGACGGTCGTTTTTGCCTTGGCTTGTCTTACTAGA
AAAAAATTAAAAGGCAATATCACAAAATGATGAACAATGCTTTACAAACA
TACAATGGAGAATTATCTCTCATCACCAGACCCATGCCAAAAGTGACGTC
ACCAAATGATGTTTTGATTAAAGTGACCCACGCTGGGGTTTGTGGAACTG
ATTTATCCATCATTGCTGGTCGATTTGAAGCAGCAAAGAAAATTATACAA
GGTCACGAGTTCTCTGGTGTAGTTTCCGGTGTTGGTGCAAAAGTCAAACA
TCTAAAGATTGGTGATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027508-exon-sc0000631-1575043694:1649..1917 | TCONS_00027508-exon-sc0000631-1575043694:1649..1917 | Clytia hemisphaerica | exon |
| TCONS_00027508-exon-sc0000631-1575043694:328..976 | TCONS_00027508-exon-sc0000631-1575043694:328..976 | Clytia hemisphaerica | exon |
| TCONS_00027508-exon-sc0000631-1510915933:1649..1917 | TCONS_00027508-exon-sc0000631-1510915933:1649..1917 | Clytia hemisphaerica | exon |
| TCONS_00027508-exon-sc0000631-1510915933:328..976 | TCONS_00027508-exon-sc0000631-1510915933:328..976 | Clytia hemisphaerica | exon |
| TCONS_00027508-exon-sc0000631-1491911889:1649..1917 | TCONS_00027508-exon-sc0000631-1491911889:1649..1917 | Clytia hemisphaerica | exon |
| TCONS_00027508-exon-sc0000631-1491911889:328..976 | TCONS_00027508-exon-sc0000631-1491911889:328..976 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000631 | supercontig | sc0000631:328..1917 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055114 | oxidation-reduction process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0016491 | oxidoreductase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055114 |
oxidation-reduction process |
| molecular_function |
GO:0016491 |
oxidoreductase activity |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
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