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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027446 ID=TCONS_00027446|Name=TCONS_00027446|organism=Clytia hemisphaerica|type=transcript|length=1577bp
AGTAAATATATTTGTTTTCTGTATTGATAGCAGAACTGTGAAGTAAAATT
CAAGAGCAAGCTTAAATATCTGATTTTTGAATATACCAAATTAGACCATA
GATCATGAATCAAAAATGCAGTCGTTGTGGAGAAACGTTTGTAGAAAGCT
ATTATTTTCGTCACCTAAATAAATGTCAGCGATCAAAACGTGCCACTGAG
GTTAACTTTGACGAATTTAAATATAACACGTCAAACATTTCATACAAATG
TCCCAATTCAAATATTGAACAAACTCTGAATGATTCAACAAACCAAGAAA
ACGTAATCAACGAAGAtgaacaaaatcaaagaaacttGGTATTTGAATGT
ATAGAAGAATTTGCTTCAGAAGAAGTTATTAATGAAATGATGAATGGGTT
ATACGACAATACCGAACCAGAATCACAACCAACTTCTCACCAAATGGCTT
GGCTTGTTTACTTTCTCGCATTTTGGCAGTATACGTACTCTATCACTGAT
ACCGCAATGAAATCCCTGATAACTTTTTTGCATGTTTTATTCAAAATCCT
AATTCCATCTAGTGTGATTGGGATGTTTCCTCGATCGCTATACTTattcc
agaaagaaattggaTTCCCAAAGAACAGTTTTAAGAAGTATGTGGTTTGT
ACACAGTGTCATAAACTGTATCATCTTGAAGACTGCTCTTTTAAATTACG
AGGAGAAATGCATTCTAAAAAATGTGATAACATTTTGTATCCAGAACATC
CTCAAAAAGCGAGAAGAAAAGAATGTGGCcaacttttaatgaaaactaTT
GTTTCTCCAACAGGAAAGAAAACTTTATATCCATTTAAAATATACTGCTA
CAAATCTCTCAAGGAAAATTTGCAGAGTCTTCTTCGTGATCCTACTTTTG
AAGATAAATGCGAGGCCTGGAGAAAATTGGAGAAGCATCCAGACGTTTTG
AGTGATGTTTATGACGGGAGAGTTTGGAAACATTTCAGTGATGAAGAAAA
CGGTTATCCTTTCTTAAATGAAAAGAGAAACTATGGCTTATGTTAAATTG
TGATTGGTTCCAGCCTTTCAAACACATTTCAAACTGTGGAAAAATGTTAT
ACTTGTTGGGATTATACCAAACATGGATAACGAACCTCCAACAAACTCTT
TCTTGAAGCCTCTTGTTGATGAATTGCAAGAAGCTTGGATTGGATATCAA
TTACTTTCAAATCAAAAGATGAAGACATTTCGGTTAGCTTTACTGATTAT
CGGATGTGACATCCCAGCAGCTAGAAAACTATGTGGTTTTTTAGGTCATA
GCGCCAAAAAAGGCTGTAACAAATGTGAAAAATCATTTCCTGGACAAGTT
GGAGATCGACTTGGAGGAGTGGACGCCACGTACTGATGCTAGACATAGAG
CACAGATGATTGAAATCTTGAAAGCTAAAACAAAAACTGACAAAGAGAAT
TTAGAGTCCGAATATGGCACACGATACTCTGTTTTGGCAAATTTAGAGTA
TGTAGACCTTATAACGATGACTGTTATAGGCCCGATGCATaatctatttt
tgggtaagtttCATATCGAATGCCCTT Run BLAST on NCBI protein sequence of TCONS_00027446-protein >TCONS_00027446-protein ID=TCONS_00027446-protein|Name=TCONS_00027446-protein|organism=Clytia hemisphaerica|type=polypeptide|length=313bp
MNQKCSRCGETFVESYYFRHLNKCQRSKRATEVNFDEFKYNTSNISYKCP
NSNIEQTLNDSTNQENVINEDEQNQRNLVFECIEEFASEEVINEMMNGLY
DNTEPESQPTSHQMAWLVYFLAFWQYTYSITDTAMKSLITFLHVLFKILI
PSSVIGMFPRSLYLFQKEIGFPKNSFKKYVVCTQCHKLYHLEDCSFKLRG
EMHSKKCDNILYPEHPQKARRKECGQLLMKTIVSPTGKKTLYPFKIYCYK
SLKENLQSLLRDPTFEDKCEAWRKLEKHPDVLSDVYDGRVWKHFSDEENG
YPFLNEKRNYGLC Run BLAST on NCBI transcript from alignment at sc0000627:88504..91705- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027446 ID=TCONS_00027446|Name=TCONS_00027446|organism=Clytia hemisphaerica|type=transcript|length=3202bp|location=Sequence derived from alignment at sc0000627:88504..91705- (Clytia hemisphaerica)
AGTAAATATATTTGTTTTCTGTATTGATAGCAGAACTGTGAAGTAAAATT
CAAGAGCAAGCTTAAATATCTGATTTTTGAATATACCAAATTAGACCATA
GATCATGAATCAGTAAGTATTTGCTACACTTTTTCTGTAATTTTTAGAAG
CCGATTCGATCAAACTTTTTAAGTTTTGTCTAAAAAATAAAAACTTTTTG
CAATGGTTTTCTATTAATACATCCCTTCTCATGGTTGGGACCATTGAGTT
TCAACCCCGAAGGGCTAGAGGTCAATCTCTAACCTTTCTCAGGCAAGAAA
AATTGAAGCCTTAAAATATGCGCCGTATTTTTTATGACGGATTGAATCTA
GCAATTCCTTTATTTTCGAGTCATATATTTTTCGAAATTAAGCGGTAAAT
TTTAGTTTCAATCAGTCATTTGTGTAAAAACCAGGCGGGTCGCTCAAGGC
CGCGCAACTTTGGTAGGATTTGTTGGCTTCAAATTCTACCAAAGAGATTG
ACTTCTAGCCCTTCGGGCTTATACTTCATTGGTTGGGACTCCACTGGGCC
GTTCCAGTTATAGTCTGTTACCCCCTACTGTAGTGGACGACACGGAATTT
CCGTAAAAAAAGCAACAAAAACATTACCGGAATTTCCGATACCTAATTTG
AATTCTTTAGCAGAATTCCGACGCAGTTAGATATTGGTCAACAAAATTCT
GATACCAACGACAACACTAATAAAACGTGATAAAACGCTGATTTCCGTTA
CTCTGTTTTACAATGACTGCAGATTTCCGTAACTTTTTGGTATGCGTCCA
CTAAATTTTCCGATACAATGCCCTAAAATAGTCCTTGAATTTCCGTAACA
AGCGGATACAAAATGAGGAATTCCGACCTAAATACTACCAGGGAAAACAA
TGTCGTCCACTAGGGGGTAACGGATGATAACTGGAACCCCTGGAAAATTT
GACCGAAAAATCATCCCAGTAGAAAATATTATTTCAATTTTAATCCCAGG
CGAATTTAAACAAATATCGTGTATTTTTTTTTATCTGCACTAAATTTTCT
GAATTGAAAACAGTGAAATTCAAATCCCAACAAAGAATATATCAACCCCC
ACCGAGTTTCAGTCCTTTATTTTCACCCCTTCTGGCTGAAAAAATTCTAC
CAGTTCTGTGAGAAGCCCGTGAGAAAGGGGTGTTTAATATCTTTATACAC
CCTTGTGTCACAGACCCGGTGGACCCCCGCCCTACTTGAAAAATCCTGTT
AGAAAAAATACCCTAAATAAATTGTCGTCAATAGGTTTTTGAAACTGTCT
ATATTATTGCTTTTTAGAAAATGCAGTCGTTGTGGAGAAACGTTTGTAGA
AAGCTATTATTTTCGTCACCTAAATAAATGTCAGCGATCAAAACGTGCCA
CTGAGGTTAACTTTGACGAATTTAAATATAACACGTCAAACATTTCATAC
AAATGTCCCAATTCAAATATTGAACAAACTCTGAATGATTCAACAAACCA
AGAAAACGTAATCAACGAAGATGAACAAAATCAAAGAAACTTGGTATTTG
AATGTATAGAAGAATTTGCTTCAGAAGAAGTTATTAATGAAATGATGAAT
GGGTTATACGACAATACCGAACCAGAATCACAACCAACTTCTCACCAAAT
GGCTTGGCTTGTTTACTTTCTCGCATTTTGGCAGTATACGTACTCTATCA
CTGATACCGCAATGAAATCCCTGATAACTTTTTTGCATGTTTTATTCAAA
ATCCTAATTCCATCTAGTGTGATTGGGATGTTTCCTCGATCGCTATACTT
ATTCCAGAAAGAAATTGGATTCCCAAAGAACAGTTTTAAGAAGTATGTGG
TTTGTACACAGTGTCATAAACTGTATCATCTTGAAGACTGCTCTTTTAAA
TTACGAGGAGAAATGCATTCTAAAAAATGTGATAACATTTTGTATCCAGA
ACATCCTCAAAAAGCGAGAAGAAAAGAATGTGGCCAACTTTTAATGAAAA
CTATTGTTTCTCCAACAGGAAAGAAAACTTTATATCCATTTAAAATATAC
TGCTACAAATCTCTCAAGGAAAATTTGCAGAGTCTTCTTCGTGATCCTAC
TTTTGAAGATAAATGCGAGGCCTGGAGAAAATTGGAGAAGCATCCAGACG
TTTTGAGTGATGTTTATGACGGGAGAGTTTGGAAACATTTCAGTGATGAA
GAAAACGGTTATCCTTTCTTAAATGAAAAGAGAAACTATGGCTTATGTTA
AATTGTGATTGGTTCCAGCCTTTCAAACACATTTCAAACTGTGGAAAAAT
GTTATACTTGTTGGGATTATACCAAACATGGATAACGAACCTCCAACAAA
CTCTTTCTTGAAGCCTCTTGTTGATGAATTGCAAGAAGCTTGGATTGGAT
ATCAATTACTTTCAAATCAAAAGATGAAGACATTTCGGTTAGCTTTACTG
ATTATCGGATGTGACATCCCAGCAGCTAGAAAACTATGTGGTTTTTTAGG
TTCGTATTTTTTTTAAAGTTGCATGTACCAGCAGGTATGTTTTAAAAAGT
CTTTGACAGCTCCCAGTCACTTTACAGCTGCCTTCCTCAATGTTAAAACA
CACACCAAACCAACTTAAGCTTTTTAAAAATATCGTTGACAGTGTTGATA
CTACTTTTAAAAGGATTTCTTTAATCATAACCCATTTGACATACAACGTA
GTTTTAACGTCCATCTAACGTGATATGAACGTTACATGGATGTTGAAACA
ACGTCGTGTGCCAGGTGGGAATAAATTTTTGAATTATTCATATGCAGATT
TATTGCAAATGAAAAGTTATTTTAAAGCCCAAAAGTACCAATTTGGGGAT
GCTTGAGATAAATTAAACTTTTGTGGATTTTTACTGAAGTGTCTCAAAAT
GATTTTTTCTCTATTTCAGGTCATAGCGCCAAAAAAGGCTGTAACAAATG
TGAAAAATCATTTCCTGGACAAGTTGGAGATCGACTTGGAGGAGTGGACG
CCACGTACTGATGCTAGACATAGAGCACAGATGATTGAAATCTTGAAAGC
TAAAACAAAAACTGACAAAGAGAATTTAGAGTCCGAATATGGCACACGAT
ACTCTGTTTTGGCAAATTTAGAGTATGTAGACCTTATAACGATGACTGTT
ATAGGCCCGATGCATAATCTATTTTTGGGTAAGTTTCATATCGAATGCCC
TT Coding sequence (CDS) from alignment at sc0000627:88504..91705- >TCONS_00027446 ID=TCONS_00027446|Name=TCONS_00027446|organism=Clytia hemisphaerica|type=CDS|length=1884bp|location=Sequence derived from alignment at sc0000627:88504..91705- (Clytia hemisphaerica)
AAAATGCAGTCGTTGTGGAGAAACGTTTGTAGAAAGCTATTATTTTCGTC
ACCTAAATAAATGTCAGCGATCAAAACGTGCCACTGAGGTTAACTTTGAC
GAATTTAAATATAACACGTCAAACATTTCATACAAATGTCCCAATTCAAA
TATTGAACAAACTCTGAATGATTCAACAAACCAAGAAAACGTAATCAACG
AAGATGAACAAAATCAAAGAAACTTGGTATTTGAATGTATAGAAGAATTT
GCTTCAGAAGAAGTTATTAATGAAATGATGAATGGGTTATACGACAATAC
CGAACCAGAATCACAACCAACTTCTCACCAAATGGCTTGGCTTGTTTACT
TTCTCGCATTTTGGCAGTATACGTACTCTATCACTGATACCGCAATGAAA
TCCCTGATAACTTTTTTGCATGTTTTATTCAAAATCCTAATTCCATCTAG
TGTGATTGGGATGTTTCCTCGATCGCTATACTTATTCCAGAAAGAAATTG
GATTCCCAAAGAACAGTTTTAAGAAGTATGTGGTTTGTACACAGTGTCAT
AAACTGTATCATCTTGAAGACTGCTCTTTTAAATTACGAGGAGAAATGCA
TTCTAAAAAATGTGATAACATTTTGTATCCAGAACATCCTCAAAAAGCGA
GAAGAAAAGAATGTGGCCAACTTTTAATGAAAACTATTGTTTCTCCAACA
GGAAAGAAAACTTTATATCCATTTAAAATATACTGCTACAAATCTCTCAA
GGAAAATTTGCAGAGTCTTCTTCGTGATCCTACTTTTGAAGATAAATGCG
AGGCCTGGAGAAAATTGGAGAAGCATCCAGACGTTTTGAGTGATGTTTAT
GACGGGAGAGTTTGGAAACATTTCAGTGATGAAGAAAACGGTTATCCTTT
CTTAAATGAAAAGAGAAACTATGGCTTATGTTAAATGAATCAAAAATGCA
GTCGTTGTGGAGAAACGTTTGTAGAAAGCTATTATTTTCGTCACCTAAAT
AAATGTCAGCGATCAAAACGTGCCACTGAGGTTAACTTTGACGAATTTAA
ATATAACACGTCAAACATTTCATACAAATGTCCCAATTCAAATATTGAAC
AAACTCTGAATGATTCAACAAACCAAGAAAACGTAATCAACGAAGATGAA
CAAAATCAAAGAAACTTGGTATTTGAATGTATAGAAGAATTTGCTTCAGA
AGAAGTTATTAATGAAATGATGAATGGGTTATACGACAATACCGAACCAG
AATCACAACCAACTTCTCACCAAATGGCTTGGCTTGTTTACTTTCTCGCA
TTTTGGCAGTATACGTACTCTATCACTGATACCGCAATGAAATCCCTGAT
AACTTTTTTGCATGTTTTATTCAAAATCCTAATTCCATCTAGTGTGATTG
GGATGTTTCCTCGATCGCTATACTTATTCCAGAAAGAAATTGGATTCCCA
AAGAACAGTTTTAAGAAGTATGTGGTTTGTACACAGTGTCATAAACTGTA
TCATCTTGAAGACTGCTCTTTTAAATTACGAGGAGAAATGCATTCTAAAA
AATGTGATAACATTTTGTATCCAGAACATCCTCAAAAAGCGAGAAGAAAA
GAATGTGGCCAACTTTTAATGAAAACTATTGTTTCTCCAACAGGAAAGAA
AACTTTATATCCATTTAAAATATACTGCTACAAATCTCTCAAGGAAAATT
TGCAGAGTCTTCTTCGTGATCCTACTTTTGAAGATAAATGCGAGGCCTGG
AGAAAATTGGAGAAGCATCCAGACGTTTTGAGTGATGTTTATGACGGGAG
AGTTTGGAAACATTTCAGTGATGAAGAAAACGGTTATCCTTTCTTAAATG
AAAAGAGAAACTATGGCTTATGTTAAATGAATCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027446-exon-sc0000627-1575043694:91594..91705 | TCONS_00027446-exon-sc0000627-1575043694:91594..91705 | Clytia hemisphaerica | exon |
| TCONS_00027446-exon-sc0000627-1575043694:89207..90388 | TCONS_00027446-exon-sc0000627-1575043694:89207..90388 | Clytia hemisphaerica | exon |
| TCONS_00027446-exon-sc0000627-1575043694:88504..88786 | TCONS_00027446-exon-sc0000627-1575043694:88504..88786 | Clytia hemisphaerica | exon |
| TCONS_00027446-exon-sc0000627-1510915933:91594..91705 | TCONS_00027446-exon-sc0000627-1510915933:91594..91705 | Clytia hemisphaerica | exon |
| TCONS_00027446-exon-sc0000627-1510915933:89207..90388 | TCONS_00027446-exon-sc0000627-1510915933:89207..90388 | Clytia hemisphaerica | exon |
| TCONS_00027446-exon-sc0000627-1510915933:88504..88786 | TCONS_00027446-exon-sc0000627-1510915933:88504..88786 | Clytia hemisphaerica | exon |
| TCONS_00027446-exon-sc0000627-1491911889:91594..91705 | TCONS_00027446-exon-sc0000627-1491911889:91594..91705 | Clytia hemisphaerica | exon |
| TCONS_00027446-exon-sc0000627-1491911889:89207..90388 | TCONS_00027446-exon-sc0000627-1491911889:89207..90388 | Clytia hemisphaerica | exon |
| TCONS_00027446-exon-sc0000627-1491911889:88504..88786 | TCONS_00027446-exon-sc0000627-1491911889:88504..88786 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000627 | supercontig | sc0000627:88504..91705 - |
Blast
The following BLAST results are available for this feature:
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