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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027331 ID=TCONS_00027331|Name=TCONS_00027331|organism=Clytia hemisphaerica|type=transcript|length=934bp
TATATTGTTCTTCAAGGTAGTTCCACCAACTGTCGATGGGCCGTTAGGTT
TTCCGCTATATGTCACCAATCATATTTTTAatgttcaaaaatgttttcat
aaaTACGACATTACAAGTTCCTGTACAACATCTCCaccaaacattttttg
ttttcttcaacTTTGAAAAGATTCCTCTGAATTTGCGATTTAAACATAAT
TGAAGATCCCATGCACATTGTCTCAAAATTGTAGTTAAGTTAGTTTTGAA
AGTGACAGTGAAGGGGCGATCCATATGGAGTGTAGATACACTGCAGAAAA
CCGTTAATCTGCTCATTGCACATATAGGCTCCTGTATAGATTTGACCAGA
ATATCCATCGATGTATTATTCCTATATGAACCACGGATTTTCACCACCAT
TTATGTCTTTAAACCATAATGCTTTCATCCCTCAATCGtcaaaaagttga
taaaaaatCTAATAACGACGCCATTTACGTTTTCGCTTCATAGTTGGCGG
TGATTTTTCCACGATATCATAATCATCAGCCCTACAAGCCGTACATTTAC
ACGTGGTCGGCACGTGAATAGGAACCAGTTTTTTTTGGTTGAACAGACAA
GAAAATTCAACATTGAAAATCTTGTGAGCAATAGGTTCACAGCATTCACA
AGTGTCTTTCTTTCTTGAAGCCATGTAGTTATCATCAAGCACAAGCACTC
CTTCCAAGCCTTCACTACTGAAACAAGATCCTTTGCATACGGGGAATCTC
GGGAAATGACGATCTCGGCAGCCGTTGATATGGATAGTTTTTGGAACGAA
CTCTTGACGACAATTGTCGTCTATGCTAACGATGCTGGTAGTCGGTAAAC
AAAATGTTGCGGTCACCGACATTGATAGGATTAGAAACAAATTGAAAGTA
TTCATGTTTGTTGACTGGCGAGTTTTAGTTTGTT Run BLAST on NCBI transcript from alignment at sc0000616:31516..38278- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027331 ID=TCONS_00027331|Name=TCONS_00027331|organism=Clytia hemisphaerica|type=transcript|length=6763bp|location=Sequence derived from alignment at sc0000616:31516..38278- (Clytia hemisphaerica)
TATATTGTTCTTCAAGGTAGTTCCAGCAATTGTCAATGGGTCGTTAGGTT
TTCCGTTATATGTCATCAATTATACTTTCAATGTACAAAAATATGTTCAT
AAATACGACATTACAAGTTCCTGTACAACATCTCCAACCGTTAATCTGCT
CATTGCACATATAGGCCCCCTATATCATAATCATAACTAATTCACATCAC
AATGATAGGTTATGAAGATTTTATTTAAAACTTTTTATGTGGGTCATATA
CTGTATCACTGCCTCAACGGTTGGAACCGAAAATGAGGGTCCCCAGACCT
CTTACTGTAAAATTTGTGGTGCACTCAGACTAAATTCCATTGTACTGGAA
CTTTACACTTTGCACTGCCTTTTACACGCCTGAAATTTTTTTTTACATCA
GTCAGAAATGGCCAGTTGACACAGGACATTCATGTAATGTTATATGGGAA
CATTGAAACAACGTTGAACAACCTGACGGGTAGAGTTTAAAGAATGTGGA
AAAAAGTAATCTTTTTTTTCTTCATTTTTTGGTGTTTCCTGTATTATAAA
ATGCCGATATTTAATTCTTACAAGATTCCCGTCTTTCCAAATAAAAGATC
AGAAAGTGGAAAATTGTAATTAGGATTATCTCTTTGATATTTCCTGGATT
GTTAGAATGAAAAAGGTGTTTACCTTCCTGGCTTTAAGTACATTGTTCCA
CTTTCTCATCTTTGATTCTAGCCGTCACTTTCCATCAGAAAGACCCTTTG
AAAAAGTTGNATTACATTGTTCCACTTTCTCATCTTTGATTCCAGCCGTT
ATTTTCCATCAGAAAGACCCTTTGAAAGAGTTAGACTTTATATACAACTG
CTAGCTATTAGACGAAATAAGTTCAAGTGTTTTTCCAAAAAAACATACGT
GTCTGTGAGGCTATGAGGAGTCCCTTAATGCCAATCGTTACTTTCAGTAT
CTAGACAAATGAAAAAATAACCTCCCCGTCACAGGAAAAATGCAATGCAA
AAATTCGTTGAAAAACACGGCTAAATTTCGAGCGTCTTTAAACATGATTG
AACACAATCGAAAGAGATCAAATTTCAGTCGAACATAATCGAATCTCAGT
CAAATCTCAAAATTGCAGTCAGTAGAGTCTCCATAAGGGGACATTCGAGT
AGCAGATGAGTTTTTCAAAATTTCTCCCTTATTCAATGAACAAAGTTTAC
CAGATGAATAAAGCTGAGACACCATAAAGACCTTTATAAAGATACCTCTG
CCTATTTTTCATGAANTAAAGCTGAGACACCATAAAGACCTTTATAAAGA
TACCTCTGCCTATTTTTGTATTACAACTACTGTATATTCATTGAAAGTGA
TACTTGTACTTTCTTTATCGTCATTAACTTTTAAAATTTACAAACAAATT
TTGATAACTATATTCTTTTGGATTTTATAAAACGATTAAATTATTAAAAT
TTAGAAATGAAAATTCTTTAACTCAATTCATTAGCATGACGTACCTTAAG
GGAACTATTTTATTTTCGAGAAAATTAGTTCCCTTAAGGTGGAGGGATAC
TTTTGTCTTCGGTATTGAAAAGTTAAGTGATGGTAAATATTTCAAGGTAC
CTACGGAATATTTCCCGGAAAAAAGTCAAAAAATATCACATCCATCCGAA
AGCTTTCTCCTTTGATTTATTCCGGAAAAAAAGAAATTTCAATTCTGCGT
GGAAAGGAATTAGAAACTATAGCCAAATGATAATTGAATTTTGATTTGTG
GTGTCTTGTGTTAAAAAATGTCCCGCATTATTCCCGACCGCACAAAGACG
TAGATAAATCATTGAAGCCATTACAAATGTATTAGAGTCAGTCTTATTTT
TGCGTATACGTGTATAAGAATGTATAACTCCAGACTAAAAACTAGTTGAC
CTTTAATTTCGCATGGTCTAGAGCAAAGAAATTCAAAGAGCTTCTCTCTT
TTGATTGTAAAGAGAAACTACTTCTTGAAATATTTTTGCAACAGTCAATT
AAGGTTATGTGCAATCCCGGGGGGGGNTAAATAAGGAGACTGGAATCTAG
TTTTGAGATCCAACATTTGAATTGAAGACATACCTAGACCCATTTTAACG
GGGTTAAGGGGCAACCCGGGGGGGGGGGGTACTTAGGCAAAATGGGTGCC
GGGTATGTGTGAGCCATAAGGGTACCTTTTCTCATTCCTCAAAAGTCTCT
CAAAAGGGGTACAAATTCAAAAGTTAGTCTCAAAATCACGAAAATCAAAA
ATTTCTCTCTAAAAGGGTCACGATTTCGCGATGAAAATCAAACCAAAATT
TGGAAAAAATGGATCAAAATTTAGGAAAAAGTCTTTCAAAGGGTCGATTT
TCGATTTTCGGCTCGGACATACCCGTCACCTCGCAAACCTAGTACCCCCT
GGGTGTGCAATACAACACGTTCGCAGCACAAACAATACTCTAAGGTCCTT
CTTTAAAGAAAATCCGAAAATCAGAATTCAGATACATACGTTGTTTGAAA
CAAATGATTTCCTATAATGGGAAACCCTTTGATCCGGTTGTTTTTGACTT
GTAACGTAATATTGTCCTTCAAGGTAGTTCCAGCAATTGTCAATGGGTCG
TTAGGTTTTCCATTATATGTTATCAATATCATACTTCTAATGTACAAAAA
TATGTTCATAAATACGACATTGCAAGTTCCTGTACAACATATCCACCAAA
CATTTTTTGTTTTCTTCAAAACTTTGAAAAAAAAAATTCTCCGACTTTGG
GATGAAGACATGGTTGAAAATCCCATGCACATTGTCTCAAAATTTTAGTT
TAGTTAGTTTTGAAAGCGACAGTGGAAGGGGTACGATCCATATAGGACGC
AGCCACACTGCAGAAAACCGTTAATCTGATCATTGCACGCATATAGGTCC
CCGTATAGATTTGACTAGAATCTCCATCGATCTATTATTCCTATATGAAC
CACGGATTTTCACCACCATTTATGTCTTTAAACCATAATACTTTCATCCC
TCAATCGTCAAAAGGTTGATAAATTCAGATCCAAAAGAAACTCCAAAAGC
GTCTTCAAAATCTAATAACGACGCCATTTACGTTTTCGCTTCATAGTTGG
CAGTGATTTTCCCACAATATCATAATCATCAGCCCTACAAGCCGTACATT
TACACGTGGTCGGCACGTGAATAGGGACCAGATTTTTTTGGTTGAACAGA
CAAGAAAATTCAACATTGAAAATTTTGTGAGCAATTGGTTCACAGCATTC
ACAAGTGTCTTTCTTTCTTGAAGCCATGTAGTTATCATCAAGCACAAGCA
CTCCTTCCAAGCCTTCACTACTGAAACAAGATCCTTTGCATACGGGGAAT
CTCGGGAAATGACGATCTCGGCAGCCGTTGATATGGATAGTTTTTGGAAC
GAACTCTTGACGACAATTGTCGTCTATGCTAACGATGCTGGTAGTCGGTA
AACAAAATGTTGCGGTCACCGACATTGAGAGGATTAGAAGCAGATTATGA
GTATTCATGTTTGTTGACGAGTTTATTTAGTTTTTTTGACTCCATGACTC
AGAAGATGAAAGATAGTTGTCAGCCACTTATCCTTCAAAATCTGAAGCAG
AGTATTGCATCACTTCCAGGCACGTGGAAAAATCCCTAAAATTATACCAT
GAATTTAGACCTCTTGAGGCTCGACTAAGCTTTTTTGTTTTTTTTCAAAA
ACGTAGTGTTCCAGGTCTCAATTAAATTGACATCAATCAAAAAACACTTT
ATAGCACCGATTAATAGTTTCTAATGGTAGATCTGACTGAAATTTACAAT
TACCTAAATCGATAGTTTATCACAGTTGCGGTTTAAGAATGTACTATAGG
AGCTTTGATTCTGGTTAGCAAGTATTCAAACCGTTATCTATCCTATTTTT
AAACAATGATGTGTATGCGTATAATAATCAAAATTATGTCGCTTAAATCT
AACTGGTTAAGATAATGCCCATTAAATATCAATTAAACTAATCCTGTTCT
AACTGTCAAGATAATGTAACAGTTGTAAGATTTATGGGCCATCAGTCATT
CGGCTAAAATTTTAGCCTATGATACATAAATCTATTAATGCTATACCGAC
CATCAATCTCTCAGGGCACTTTACATTGGGTCATTAACTACTAGTCAAAA
TTCGAAGACAATTCAAAATTAACCAGTACAAATTTAACTGATAAAACCCC
TATAACAAACCCGAGTGAGACCCTTTTTCACTGGAAACCCTGGAATCTAA
AAATTCAAAAGCTCAAGTGACTTCCCCCGCCGTTGAATTTCAACACCATT
TTATTCCCAATAACTAGAAGAATCTCACCAGGTCAATGAGACAGGGATGT
TACTTAAAGATTATTCAGTTTTTTTGGGTCATCCCTTTCCCTAATTTAAA
TCCTTGGTGACACTGATGAGTGACAAGGTTGGTGGTAATTTTTTTTTGCG
AGTAGAACCTTGTGATTAGACAGAATTAAGTTCCATTTAGGGATTTCAAT
AATTCACATCGCAGTGATAGATTATGAAGATTTTATTTAAAACTTTCTTG
TCTGGGTCATATACTGTATCACTGCCTCAACGGTTGGAACCGAAAATGAG
GATGTCCCCAGACCACTTACTGTAAAATTTGTGGCGCACTCAGACTAAAT
TCCATTGTACTGTAAACACACTTATGATGTTAAACATTTTTCAGATCGTC
AAAACCTTTTACATGCCTGAAGAAAATTTTTACATCGGCCAGAAATGGTC
AGTTGACACAGAACATTCATAAAATGTTATATGGGAACATTGAAACAACG
TTGAACGGCCTGACGGGTAGAGTATAAAGAATGTGGAAAAAAGCAATCTT
TTTTTTTTTTCATTTTTTGGTGTTTCCTGTATTATAAAATGCCAATATTT
AATTCTTACAAGTTTCCCGTCTTTCCAAATAAAAGATCAGAAAGTGGAAA
ATTGTAATTTGGATTATCTCTTTGATATTTCCTGGATTGTTAGAATGAAT
AAGGTGTTTACCTTCCTGGCTTTAAGTACATTGTTCCACTTTCTCATCTT
TGATTCTAGCCGTCATTTTCCATCAGAAAGACCCTTTGAAAAAGTTGGAC
TTTATAAATAAGTTCAAGTGTTTTTCCAAAAAAACATACGTGTCTGTGAG
GGTATAAGGAGTCCCTTAATGCCAATTGTTACTTTCAGTATCTAGACAAA
TGAAAAACTAACCTCCCCCGTCACAGGAAAAATGCAATGCAAAAATTCGT
TGAAAAAACACGGGTATATTTCGACCGTCTTTAAACACGATTGAACACAA
TCGACAGAGATCAAATTTCAGTCGAATATAATCGAATCTCAGTCAAATCT
CAAAATTGCAGTCAGTAGAGGGGGGACATAAGAGAGAGACATTATTAGAG
ATAAGGGGACATTCGCGTAGCAGATGAGTTTTTCAAAATGTCTCCCTAAT
TCGATGAATAAAGTTTACCAGATGAATAAAGCTGAGACACCATAAAGACC
TTTATAAAGATACCTCTGCCTATTTTTGTATTACAACTACTGTATATTCA
TTGAAAGTGATACTTGTACTTTCTTTATCGTCATTAACTTTTAAAATTTA
CAAACAAATTTTGATAACTATATTCTTTTGGATTTCATAAAACGATTAAA
TTATTAAAATTTAGAAATGAAAATTCTTTAACTCAATTCATTAGCATGAC
GTACCTTAAGGGAAATAATCCAAAGTCCTTCTTCAACGAAAATCAGAATT
CAGATACATGCGTTGTTTGAAACAAATGATTGTCTATAACGGGCAACTCT
TTGATCCGGTTGTTTTTTACTTTCAGCGTTATATTGTCCTTCAAGGTAGT
TCCACCAACTGTCGATGGGCCGTTAGGTTTTCCGCTATATGTCACCAATC
ATATTTTTAATGTTCAAAAATGTTTTCATAAATACGACATTACAAGTTCC
TGTACAACATCTCCACCAAACATTTTTTGTTTTCTTCAACTTTGAAAAGA
TTCCTCTGAATTTGCGATTTAAACATAATTGAAGATCCCATGCACATTGT
CTCAAAATTGTAGTTAAGTTAGTTTTGAAAGTGACAGTGAAGGGGCGATC
CATATGGAGTGTAGATACACTGCAGAAAACCGTTAATCTGCTCATTGCAC
ATATAGGCTCCTGTATAGATTTGACCAGAATATCCATCGATGTATTATTC
CTATATGAACCACGGATTTTCACCACCATTTATGTCTTTAAACCATAATG
CTTTCATCCCTCAATCGTCAAAAAGTTGATAAAAAATCTAATAACGACGC
CATTTACGTTTTCGCTTCATAGTTGGCGGTGATTTTTCCACGATATCATA
ATCATCAGCCCTACAAGCCGTACATTTACACGTGGTCGGCACGTGAATAG
GAACCAGTTTTTTTTGGTTGAACAGACAAGAAAATTCAACATTGAAAATC
TTGTGAGCAATAGGTTCACAGCATTCACAAGTGTCTTTCTTTCTTGAAGC
CATGTAGTTATCATCAAGCACAAGCACTCCTTCCAAGCCTTCACTACTGA
AACAAGATCCTTTGCATACGGGGAATCTCGGGAAATGACGATCTCGGCAG
CCGTTGATATGGATAGTTTTTGGAACGAACTCTTGACGACAATTGTCGTC
TATGCTAACGATGCTGGTAGTCGGTAAACAAAATGTTGCGGTCACCGACA
TTGATAGGATTAGAAACAAATTGAAAGTATTCATGTTTGTTGACTGGCGA
GTTTTAGTTTGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027331-exon-sc0000616-1575043694:38263..38278 | TCONS_00027331-exon-sc0000616-1575043694:38263..38278 | Clytia hemisphaerica | exon |
| TCONS_00027331-exon-sc0000616-1575043694:31516..32433 | TCONS_00027331-exon-sc0000616-1575043694:31516..32433 | Clytia hemisphaerica | exon |
| TCONS_00027331-exon-sc0000616-1510915933:38263..38278 | TCONS_00027331-exon-sc0000616-1510915933:38263..38278 | Clytia hemisphaerica | exon |
| TCONS_00027331-exon-sc0000616-1510915933:31516..32433 | TCONS_00027331-exon-sc0000616-1510915933:31516..32433 | Clytia hemisphaerica | exon |
| TCONS_00027331-exon-sc0000616-1491911889:38263..38278 | TCONS_00027331-exon-sc0000616-1491911889:38263..38278 | Clytia hemisphaerica | exon |
| TCONS_00027331-exon-sc0000616-1491911889:31516..32433 | TCONS_00027331-exon-sc0000616-1491911889:31516..32433 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| sc0000616 | supercontig | sc0000616:31516..38278 - |
Blast
The following BLAST results are available for this feature:
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