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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027330 ID=TCONS_00027330|Name=TCONS_00027330|organism=Clytia hemisphaerica|type=transcript|length=896bp
GGTCGTTAGGTTTTCCGTTATATGTCATCAATTATACTTTCAATGtacaa
aaatatgttcataaATACGACATTACAAGTTCCTGTACAACATCTCCacc
aaacattttttgttttcttcaacTTTGAAAAGATTCCTCTGAATTTGCGA
TTTAAACATAATTGAAGATCCCATGCACATTGTCTCAAAATTGTAGTTAA
GTTAGTTTTGAAAGTGACAGTGAAGGGGCGATCCATATGGAGTGTAGATA
CACTGCAGAAAACCGTTAATCTGCTCATTGCACATATAGGCTCCTGTATA
GATTTGACCAGAATATCCATCGATGTATTATTCCTATATGAACCACGGAT
TTTCACCACCATTTATGTCTTTAAACCATAATGCTTTCATCCCTCAATCG
tcaaaaagttgataaaaaatCTAATAACGACGCCATTTACGTTTTCGCTT
CATAGTTGGCGGTGATTTTTCCACGATATCATAATCATCAGCCCTACAAG
CCGTACATTTACACGTGGTCGGCACGTGAATAGGAACCAGTTTTTTTTGG
TTGAACAGACAAGAAAATTCAACATTGAAAATCTTGTGAGCAATAGGTTC
ACAGCATTCACAAGTGTCTTTCTTTCTTGAAGCCATGTAGTTATCATCAA
GCACAAGCACTCCTTCCAAGCCTTCACTACTGAAACAAGATCCTTTGCAT
ACGGGGAATCTCGGGAAATGACGATCTCGGCAGCCGTTGATATGGATAGT
TTTTGGAACGAACTCTTGACGACAATTGTCGTCTATGCTAACGATGCTGG
TAGTCGGTAAACAAAATGTTGCGGTCACCGACATTGATAGGATTAGAAAC
AAATTGAAAGTATTCATGTTTGTTGACTGGCGAGTTTTAGTTTGTT Run BLAST on NCBI transcript from alignment at sc0000616:31516..38240- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027330 ID=TCONS_00027330|Name=TCONS_00027330|organism=Clytia hemisphaerica|type=transcript|length=6725bp|location=Sequence derived from alignment at sc0000616:31516..38240- (Clytia hemisphaerica)
GGTCGTTAGGTTTTCCGTTATATGTCATCAATTATACTTTCAATGTACAA
AAATATGTTCATAAATACGACATTACAAGTTCCTGTACAACATCTCCAAC
CGTTAATCTGCTCATTGCACATATAGGCCCCCTATATCATAATCATAACT
AATTCACATCACAATGATAGGTTATGAAGATTTTATTTAAAACTTTTTAT
GTGGGTCATATACTGTATCACTGCCTCAACGGTTGGAACCGAAAATGAGG
GTCCCCAGACCTCTTACTGTAAAATTTGTGGTGCACTCAGACTAAATTCC
ATTGTACTGGAACTTTACACTTTGCACTGCCTTTTACACGCCTGAAATTT
TTTTTTACATCAGTCAGAAATGGCCAGTTGACACAGGACATTCATGTAAT
GTTATATGGGAACATTGAAACAACGTTGAACAACCTGACGGGTAGAGTTT
AAAGAATGTGGAAAAAAGTAATCTTTTTTTTCTTCATTTTTTGGTGTTTC
CTGTATTATAAAATGCCGATATTTAATTCTTACAAGATTCCCGTCTTTCC
AAATAAAAGATCAGAAAGTGGAAAATTGTAATTAGGATTATCTCTTTGAT
ATTTCCTGGATTGTTAGAATGAAAAAGGTGTTTACCTTCCTGGCTTTAAG
TACATTGTTCCACTTTCTCATCTTTGATTCTAGCCGTCACTTTCCATCAG
AAAGACCCTTTGAAAAAGTTGNATTACATTGTTCCACTTTCTCATCTTTG
ATTCCAGCCGTTATTTTCCATCAGAAAGACCCTTTGAAAGAGTTAGACTT
TATATACAACTGCTAGCTATTAGACGAAATAAGTTCAAGTGTTTTTCCAA
AAAAACATACGTGTCTGTGAGGCTATGAGGAGTCCCTTAATGCCAATCGT
TACTTTCAGTATCTAGACAAATGAAAAAATAACCTCCCCGTCACAGGAAA
AATGCAATGCAAAAATTCGTTGAAAAACACGGCTAAATTTCGAGCGTCTT
TAAACATGATTGAACACAATCGAAAGAGATCAAATTTCAGTCGAACATAA
TCGAATCTCAGTCAAATCTCAAAATTGCAGTCAGTAGAGTCTCCATAAGG
GGACATTCGAGTAGCAGATGAGTTTTTCAAAATTTCTCCCTTATTCAATG
AACAAAGTTTACCAGATGAATAAAGCTGAGACACCATAAAGACCTTTATA
AAGATACCTCTGCCTATTTTTCATGAANTAAAGCTGAGACACCATAAAGA
CCTTTATAAAGATACCTCTGCCTATTTTTGTATTACAACTACTGTATATT
CATTGAAAGTGATACTTGTACTTTCTTTATCGTCATTAACTTTTAAAATT
TACAAACAAATTTTGATAACTATATTCTTTTGGATTTTATAAAACGATTA
AATTATTAAAATTTAGAAATGAAAATTCTTTAACTCAATTCATTAGCATG
ACGTACCTTAAGGGAACTATTTTATTTTCGAGAAAATTAGTTCCCTTAAG
GTGGAGGGATACTTTTGTCTTCGGTATTGAAAAGTTAAGTGATGGTAAAT
ATTTCAAGGTACCTACGGAATATTTCCCGGAAAAAAGTCAAAAAATATCA
CATCCATCCGAAAGCTTTCTCCTTTGATTTATTCCGGAAAAAAAGAAATT
TCAATTCTGCGTGGAAAGGAATTAGAAACTATAGCCAAATGATAATTGAA
TTTTGATTTGTGGTGTCTTGTGTTAAAAAATGTCCCGCATTATTCCCGAC
CGCACAAAGACGTAGATAAATCATTGAAGCCATTACAAATGTATTAGAGT
CAGTCTTATTTTTGCGTATACGTGTATAAGAATGTATAACTCCAGACTAA
AAACTAGTTGACCTTTAATTTCGCATGGTCTAGAGCAAAGAAATTCAAAG
AGCTTCTCTCTTTTGATTGTAAAGAGAAACTACTTCTTGAAATATTTTTG
CAACAGTCAATTAAGGTTATGTGCAATCCCGGGGGGGGNTAAATAAGGAG
ACTGGAATCTAGTTTTGAGATCCAACATTTGAATTGAAGACATACCTAGA
CCCATTTTAACGGGGTTAAGGGGCAACCCGGGGGGGGGGGGTACTTAGGC
AAAATGGGTGCCGGGTATGTGTGAGCCATAAGGGTACCTTTTCTCATTCC
TCAAAAGTCTCTCAAAAGGGGTACAAATTCAAAAGTTAGTCTCAAAATCA
CGAAAATCAAAAATTTCTCTCTAAAAGGGTCACGATTTCGCGATGAAAAT
CAAACCAAAATTTGGAAAAAATGGATCAAAATTTAGGAAAAAGTCTTTCA
AAGGGTCGATTTTCGATTTTCGGCTCGGACATACCCGTCACCTCGCAAAC
CTAGTACCCCCTGGGTGTGCAATACAACACGTTCGCAGCACAAACAATAC
TCTAAGGTCCTTCTTTAAAGAAAATCCGAAAATCAGAATTCAGATACATA
CGTTGTTTGAAACAAATGATTTCCTATAATGGGAAACCCTTTGATCCGGT
TGTTTTTGACTTGTAACGTAATATTGTCCTTCAAGGTAGTTCCAGCAATT
GTCAATGGGTCGTTAGGTTTTCCATTATATGTTATCAATATCATACTTCT
AATGTACAAAAATATGTTCATAAATACGACATTGCAAGTTCCTGTACAAC
ATATCCACCAAACATTTTTTGTTTTCTTCAAAACTTTGAAAAAAAAAATT
CTCCGACTTTGGGATGAAGACATGGTTGAAAATCCCATGCACATTGTCTC
AAAATTTTAGTTTAGTTAGTTTTGAAAGCGACAGTGGAAGGGGTACGATC
CATATAGGACGCAGCCACACTGCAGAAAACCGTTAATCTGATCATTGCAC
GCATATAGGTCCCCGTATAGATTTGACTAGAATCTCCATCGATCTATTAT
TCCTATATGAACCACGGATTTTCACCACCATTTATGTCTTTAAACCATAA
TACTTTCATCCCTCAATCGTCAAAAGGTTGATAAATTCAGATCCAAAAGA
AACTCCAAAAGCGTCTTCAAAATCTAATAACGACGCCATTTACGTTTTCG
CTTCATAGTTGGCAGTGATTTTCCCACAATATCATAATCATCAGCCCTAC
AAGCCGTACATTTACACGTGGTCGGCACGTGAATAGGGACCAGATTTTTT
TGGTTGAACAGACAAGAAAATTCAACATTGAAAATTTTGTGAGCAATTGG
TTCACAGCATTCACAAGTGTCTTTCTTTCTTGAAGCCATGTAGTTATCAT
CAAGCACAAGCACTCCTTCCAAGCCTTCACTACTGAAACAAGATCCTTTG
CATACGGGGAATCTCGGGAAATGACGATCTCGGCAGCCGTTGATATGGAT
AGTTTTTGGAACGAACTCTTGACGACAATTGTCGTCTATGCTAACGATGC
TGGTAGTCGGTAAACAAAATGTTGCGGTCACCGACATTGAGAGGATTAGA
AGCAGATTATGAGTATTCATGTTTGTTGACGAGTTTATTTAGTTTTTTTG
ACTCCATGACTCAGAAGATGAAAGATAGTTGTCAGCCACTTATCCTTCAA
AATCTGAAGCAGAGTATTGCATCACTTCCAGGCACGTGGAAAAATCCCTA
AAATTATACCATGAATTTAGACCTCTTGAGGCTCGACTAAGCTTTTTTGT
TTTTTTTCAAAAACGTAGTGTTCCAGGTCTCAATTAAATTGACATCAATC
AAAAAACACTTTATAGCACCGATTAATAGTTTCTAATGGTAGATCTGACT
GAAATTTACAATTACCTAAATCGATAGTTTATCACAGTTGCGGTTTAAGA
ATGTACTATAGGAGCTTTGATTCTGGTTAGCAAGTATTCAAACCGTTATC
TATCCTATTTTTAAACAATGATGTGTATGCGTATAATAATCAAAATTATG
TCGCTTAAATCTAACTGGTTAAGATAATGCCCATTAAATATCAATTAAAC
TAATCCTGTTCTAACTGTCAAGATAATGTAACAGTTGTAAGATTTATGGG
CCATCAGTCATTCGGCTAAAATTTTAGCCTATGATACATAAATCTATTAA
TGCTATACCGACCATCAATCTCTCAGGGCACTTTACATTGGGTCATTAAC
TACTAGTCAAAATTCGAAGACAATTCAAAATTAACCAGTACAAATTTAAC
TGATAAAACCCCTATAACAAACCCGAGTGAGACCCTTTTTCACTGGAAAC
CCTGGAATCTAAAAATTCAAAAGCTCAAGTGACTTCCCCCGCCGTTGAAT
TTCAACACCATTTTATTCCCAATAACTAGAAGAATCTCACCAGGTCAATG
AGACAGGGATGTTACTTAAAGATTATTCAGTTTTTTTGGGTCATCCCTTT
CCCTAATTTAAATCCTTGGTGACACTGATGAGTGACAAGGTTGGTGGTAA
TTTTTTTTTGCGAGTAGAACCTTGTGATTAGACAGAATTAAGTTCCATTT
AGGGATTTCAATAATTCACATCGCAGTGATAGATTATGAAGATTTTATTT
AAAACTTTCTTGTCTGGGTCATATACTGTATCACTGCCTCAACGGTTGGA
ACCGAAAATGAGGATGTCCCCAGACCACTTACTGTAAAATTTGTGGCGCA
CTCAGACTAAATTCCATTGTACTGTAAACACACTTATGATGTTAAACATT
TTTCAGATCGTCAAAACCTTTTACATGCCTGAAGAAAATTTTTACATCGG
CCAGAAATGGTCAGTTGACACAGAACATTCATAAAATGTTATATGGGAAC
ATTGAAACAACGTTGAACGGCCTGACGGGTAGAGTATAAAGAATGTGGAA
AAAAGCAATCTTTTTTTTTTTTCATTTTTTGGTGTTTCCTGTATTATAAA
ATGCCAATATTTAATTCTTACAAGTTTCCCGTCTTTCCAAATAAAAGATC
AGAAAGTGGAAAATTGTAATTTGGATTATCTCTTTGATATTTCCTGGATT
GTTAGAATGAATAAGGTGTTTACCTTCCTGGCTTTAAGTACATTGTTCCA
CTTTCTCATCTTTGATTCTAGCCGTCATTTTCCATCAGAAAGACCCTTTG
AAAAAGTTGGACTTTATAAATAAGTTCAAGTGTTTTTCCAAAAAAACATA
CGTGTCTGTGAGGGTATAAGGAGTCCCTTAATGCCAATTGTTACTTTCAG
TATCTAGACAAATGAAAAACTAACCTCCCCCGTCACAGGAAAAATGCAAT
GCAAAAATTCGTTGAAAAAACACGGGTATATTTCGACCGTCTTTAAACAC
GATTGAACACAATCGACAGAGATCAAATTTCAGTCGAATATAATCGAATC
TCAGTCAAATCTCAAAATTGCAGTCAGTAGAGGGGGGACATAAGAGAGAG
ACATTATTAGAGATAAGGGGACATTCGCGTAGCAGATGAGTTTTTCAAAA
TGTCTCCCTAATTCGATGAATAAAGTTTACCAGATGAATAAAGCTGAGAC
ACCATAAAGACCTTTATAAAGATACCTCTGCCTATTTTTGTATTACAACT
ACTGTATATTCATTGAAAGTGATACTTGTACTTTCTTTATCGTCATTAAC
TTTTAAAATTTACAAACAAATTTTGATAACTATATTCTTTTGGATTTCAT
AAAACGATTAAATTATTAAAATTTAGAAATGAAAATTCTTTAACTCAATT
CATTAGCATGACGTACCTTAAGGGAAATAATCCAAAGTCCTTCTTCAACG
AAAATCAGAATTCAGATACATGCGTTGTTTGAAACAAATGATTGTCTATA
ACGGGCAACTCTTTGATCCGGTTGTTTTTTACTTTCAGCGTTATATTGTC
CTTCAAGGTAGTTCCACCAACTGTCGATGGGCCGTTAGGTTTTCCGCTAT
ATGTCACCAATCATATTTTTAATGTTCAAAAATGTTTTCATAAATACGAC
ATTACAAGTTCCTGTACAACATCTCCACCAAACATTTTTTGTTTTCTTCA
ACTTTGAAAAGATTCCTCTGAATTTGCGATTTAAACATAATTGAAGATCC
CATGCACATTGTCTCAAAATTGTAGTTAAGTTAGTTTTGAAAGTGACAGT
GAAGGGGCGATCCATATGGAGTGTAGATACACTGCAGAAAACCGTTAATC
TGCTCATTGCACATATAGGCTCCTGTATAGATTTGACCAGAATATCCATC
GATGTATTATTCCTATATGAACCACGGATTTTCACCACCATTTATGTCTT
TAAACCATAATGCTTTCATCCCTCAATCGTCAAAAAGTTGATAAAAAATC
TAATAACGACGCCATTTACGTTTTCGCTTCATAGTTGGCGGTGATTTTTC
CACGATATCATAATCATCAGCCCTACAAGCCGTACATTTACACGTGGTCG
GCACGTGAATAGGAACCAGTTTTTTTTGGTTGAACAGACAAGAAAATTCA
ACATTGAAAATCTTGTGAGCAATAGGTTCACAGCATTCACAAGTGTCTTT
CTTTCTTGAAGCCATGTAGTTATCATCAAGCACAAGCACTCCTTCCAAGC
CTTCACTACTGAAACAAGATCCTTTGCATACGGGGAATCTCGGGAAATGA
CGATCTCGGCAGCCGTTGATATGGATAGTTTTTGGAACGAACTCTTGACG
ACAATTGTCGTCTATGCTAACGATGCTGGTAGTCGGTAAACAAAATGTTG
CGGTCACCGACATTGATAGGATTAGAAACAAATTGAAAGTATTCATGTTT
GTTGACTGGCGAGTTTTAGTTTGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027330-exon-sc0000616-1575043694:38150..38240 | TCONS_00027330-exon-sc0000616-1575043694:38150..38240 | Clytia hemisphaerica | exon |
| TCONS_00027330-exon-sc0000616-1575043694:31516..32320 | TCONS_00027330-exon-sc0000616-1575043694:31516..32320 | Clytia hemisphaerica | exon |
| TCONS_00027330-exon-sc0000616-1510915933:38150..38240 | TCONS_00027330-exon-sc0000616-1510915933:38150..38240 | Clytia hemisphaerica | exon |
| TCONS_00027330-exon-sc0000616-1510915933:31516..32320 | TCONS_00027330-exon-sc0000616-1510915933:31516..32320 | Clytia hemisphaerica | exon |
| TCONS_00027330-exon-sc0000616-1491911889:38150..38240 | TCONS_00027330-exon-sc0000616-1491911889:38150..38240 | Clytia hemisphaerica | exon |
| TCONS_00027330-exon-sc0000616-1491911889:31516..32320 | TCONS_00027330-exon-sc0000616-1491911889:31516..32320 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000616 | supercontig | sc0000616:31516..38240 - |
Blast
The following BLAST results are available for this feature:
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