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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027328 ID=TCONS_00027328|Name=TCONS_00027328|organism=Clytia hemisphaerica|type=transcript|length=855bp
AATGtacaaaaatatgttcataaATACGACATTACAAGTTCCTGTACAAC
ATCTCCaccaaacattttttgttttcttcaacTTTGAAAAGATTCCTCTG
AATTTGCGATTTAAACATAATTGAAGATCCCATGCACATTGTCTCAAAAT
TGTAGTTAAGTTAGTTTTGAAAGTGACAGTGAAGGGGCGATCCATATGGA
GTGTAGATACACTGCAGAAAACCGTTAATCTGCTCATTGCACATATAGGC
TCCTGTATAGATTTGACCAGAATATCCATCGATGTATTATTCCTATATGA
ACCACGGATTTTCACCACCATTTATGTCTTTAAACCATAATGCTTTCATC
CCTCAATCGtcaaaaagttgataaaaaatCTAATAACGACGCCATTTACG
TTTTCGCTTCATAGTTGGCGGTGATTTTTCCACGATATCATAATCATCAG
CCCTACAAGCCGTACATTTACACGTGGTCGGCACGTGAATAGGAACCAGT
TTTTTTTGGTTGAACAGACAAGAAAATTCAACATTGAAAATCTTGTGAGC
AATAGGTTCACAGCATTCACAAGTGTCTTTCTTTCTTGAAGCCATGTAGT
TATCATCAAGCACAAGCACTCCTTCCAAGCCTTCACTACTGAAACAAGAT
CCTTTGCATACGGGGAATCTCGGGAAATGACGATCTCGGCAGCCGTTGAT
ATGGATAGTTTTTGGAACGAACTCTTGACGACAATTGTCGTCTATGCTAA
CGATGCTGGTAGTCGGTAAACAAAATGTTGCGGTCACCGACATTGATAGG
ATTAGAAACAAATTGAAAGTATTCATGTTTGTTGACTGGCGAGTTTTAGT
TTGTT Run BLAST on NCBI transcript from alignment at sc0000616:31516..35640- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027328 ID=TCONS_00027328|Name=TCONS_00027328|organism=Clytia hemisphaerica|type=transcript|length=4125bp|location=Sequence derived from alignment at sc0000616:31516..35640- (Clytia hemisphaerica)
AATGTACAAAAATATGTTCATAAATACGACATTGCAAGTTCCTGTACAAC
ATATCCACCAAACATTTTTTGTTTTCTTCAAAACTTTGAAAAAAAAAATT
CTCCGACTTTGGGATGAAGACATGGTTGAAAATCCCATGCACATTGTCTC
AAAATTTTAGTTTAGTTAGTTTTGAAAGCGACAGTGGAAGGGGTACGATC
CATATAGGACGCAGCCACACTGCAGAAAACCGTTAATCTGATCATTGCAC
GCATATAGGTCCCCGTATAGATTTGACTAGAATCTCCATCGATCTATTAT
TCCTATATGAACCACGGATTTTCACCACCATTTATGTCTTTAAACCATAA
TACTTTCATCCCTCAATCGTCAAAAGGTTGATAAATTCAGATCCAAAAGA
AACTCCAAAAGCGTCTTCAAAATCTAATAACGACGCCATTTACGTTTTCG
CTTCATAGTTGGCAGTGATTTTCCCACAATATCATAATCATCAGCCCTAC
AAGCCGTACATTTACACGTGGTCGGCACGTGAATAGGGACCAGATTTTTT
TGGTTGAACAGACAAGAAAATTCAACATTGAAAATTTTGTGAGCAATTGG
TTCACAGCATTCACAAGTGTCTTTCTTTCTTGAAGCCATGTAGTTATCAT
CAAGCACAAGCACTCCTTCCAAGCCTTCACTACTGAAACAAGATCCTTTG
CATACGGGGAATCTCGGGAAATGACGATCTCGGCAGCCGTTGATATGGAT
AGTTTTTGGAACGAACTCTTGACGACAATTGTCGTCTATGCTAACGATGC
TGGTAGTCGGTAAACAAAATGTTGCGGTCACCGACATTGAGAGGATTAGA
AGCAGATTATGAGTATTCATGTTTGTTGACGAGTTTATTTAGTTTTTTTG
ACTCCATGACTCAGAAGATGAAAGATAGTTGTCAGCCACTTATCCTTCAA
AATCTGAAGCAGAGTATTGCATCACTTCCAGGCACGTGGAAAAATCCCTA
AAATTATACCATGAATTTAGACCTCTTGAGGCTCGACTAAGCTTTTTTGT
TTTTTTTCAAAAACGTAGTGTTCCAGGTCTCAATTAAATTGACATCAATC
AAAAAACACTTTATAGCACCGATTAATAGTTTCTAATGGTAGATCTGACT
GAAATTTACAATTACCTAAATCGATAGTTTATCACAGTTGCGGTTTAAGA
ATGTACTATAGGAGCTTTGATTCTGGTTAGCAAGTATTCAAACCGTTATC
TATCCTATTTTTAAACAATGATGTGTATGCGTATAATAATCAAAATTATG
TCGCTTAAATCTAACTGGTTAAGATAATGCCCATTAAATATCAATTAAAC
TAATCCTGTTCTAACTGTCAAGATAATGTAACAGTTGTAAGATTTATGGG
CCATCAGTCATTCGGCTAAAATTTTAGCCTATGATACATAAATCTATTAA
TGCTATACCGACCATCAATCTCTCAGGGCACTTTACATTGGGTCATTAAC
TACTAGTCAAAATTCGAAGACAATTCAAAATTAACCAGTACAAATTTAAC
TGATAAAACCCCTATAACAAACCCGAGTGAGACCCTTTTTCACTGGAAAC
CCTGGAATCTAAAAATTCAAAAGCTCAAGTGACTTCCCCCGCCGTTGAAT
TTCAACACCATTTTATTCCCAATAACTAGAAGAATCTCACCAGGTCAATG
AGACAGGGATGTTACTTAAAGATTATTCAGTTTTTTTGGGTCATCCCTTT
CCCTAATTTAAATCCTTGGTGACACTGATGAGTGACAAGGTTGGTGGTAA
TTTTTTTTTGCGAGTAGAACCTTGTGATTAGACAGAATTAAGTTCCATTT
AGGGATTTCAATAATTCACATCGCAGTGATAGATTATGAAGATTTTATTT
AAAACTTTCTTGTCTGGGTCATATACTGTATCACTGCCTCAACGGTTGGA
ACCGAAAATGAGGATGTCCCCAGACCACTTACTGTAAAATTTGTGGCGCA
CTCAGACTAAATTCCATTGTACTGTAAACACACTTATGATGTTAAACATT
TTTCAGATCGTCAAAACCTTTTACATGCCTGAAGAAAATTTTTACATCGG
CCAGAAATGGTCAGTTGACACAGAACATTCATAAAATGTTATATGGGAAC
ATTGAAACAACGTTGAACGGCCTGACGGGTAGAGTATAAAGAATGTGGAA
AAAAGCAATCTTTTTTTTTTTTCATTTTTTGGTGTTTCCTGTATTATAAA
ATGCCAATATTTAATTCTTACAAGTTTCCCGTCTTTCCAAATAAAAGATC
AGAAAGTGGAAAATTGTAATTTGGATTATCTCTTTGATATTTCCTGGATT
GTTAGAATGAATAAGGTGTTTACCTTCCTGGCTTTAAGTACATTGTTCCA
CTTTCTCATCTTTGATTCTAGCCGTCATTTTCCATCAGAAAGACCCTTTG
AAAAAGTTGGACTTTATAAATAAGTTCAAGTGTTTTTCCAAAAAAACATA
CGTGTCTGTGAGGGTATAAGGAGTCCCTTAATGCCAATTGTTACTTTCAG
TATCTAGACAAATGAAAAACTAACCTCCCCCGTCACAGGAAAAATGCAAT
GCAAAAATTCGTTGAAAAAACACGGGTATATTTCGACCGTCTTTAAACAC
GATTGAACACAATCGACAGAGATCAAATTTCAGTCGAATATAATCGAATC
TCAGTCAAATCTCAAAATTGCAGTCAGTAGAGGGGGGACATAAGAGAGAG
ACATTATTAGAGATAAGGGGACATTCGCGTAGCAGATGAGTTTTTCAAAA
TGTCTCCCTAATTCGATGAATAAAGTTTACCAGATGAATAAAGCTGAGAC
ACCATAAAGACCTTTATAAAGATACCTCTGCCTATTTTTGTATTACAACT
ACTGTATATTCATTGAAAGTGATACTTGTACTTTCTTTATCGTCATTAAC
TTTTAAAATTTACAAACAAATTTTGATAACTATATTCTTTTGGATTTCAT
AAAACGATTAAATTATTAAAATTTAGAAATGAAAATTCTTTAACTCAATT
CATTAGCATGACGTACCTTAAGGGAAATAATCCAAAGTCCTTCTTCAACG
AAAATCAGAATTCAGATACATGCGTTGTTTGAAACAAATGATTGTCTATA
ACGGGCAACTCTTTGATCCGGTTGTTTTTTACTTTCAGCGTTATATTGTC
CTTCAAGGTAGTTCCACCAACTGTCGATGGGCCGTTAGGTTTTCCGCTAT
ATGTCACCAATCATATTTTTAATGTTCAAAAATGTTTTCATAAATACGAC
ATTACAAGTTCCTGTACAACATCTCCACCAAACATTTTTTGTTTTCTTCA
ACTTTGAAAAGATTCCTCTGAATTTGCGATTTAAACATAATTGAAGATCC
CATGCACATTGTCTCAAAATTGTAGTTAAGTTAGTTTTGAAAGTGACAGT
GAAGGGGCGATCCATATGGAGTGTAGATACACTGCAGAAAACCGTTAATC
TGCTCATTGCACATATAGGCTCCTGTATAGATTTGACCAGAATATCCATC
GATGTATTATTCCTATATGAACCACGGATTTTCACCACCATTTATGTCTT
TAAACCATAATGCTTTCATCCCTCAATCGTCAAAAAGTTGATAAAAAATC
TAATAACGACGCCATTTACGTTTTCGCTTCATAGTTGGCGGTGATTTTTC
CACGATATCATAATCATCAGCCCTACAAGCCGTACATTTACACGTGGTCG
GCACGTGAATAGGAACCAGTTTTTTTTGGTTGAACAGACAAGAAAATTCA
ACATTGAAAATCTTGTGAGCAATAGGTTCACAGCATTCACAAGTGTCTTT
CTTTCTTGAAGCCATGTAGTTATCATCAAGCACAAGCACTCCTTCCAAGC
CTTCACTACTGAAACAAGATCCTTTGCATACGGGGAATCTCGGGAAATGA
CGATCTCGGCAGCCGTTGATATGGATAGTTTTTGGAACGAACTCTTGACG
ACAATTGTCGTCTATGCTAACGATGCTGGTAGTCGGTAAACAAAATGTTG
CGGTCACCGACATTGATAGGATTAGAAACAAATTGAAAGTATTCATGTTT
GTTGACTGGCGAGTTTTAGTTTGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027328-exon-sc0000616-1575043694:35611..35640 | TCONS_00027328-exon-sc0000616-1575043694:35611..35640 | Clytia hemisphaerica | exon |
| TCONS_00027328-exon-sc0000616-1575043694:31516..32340 | TCONS_00027328-exon-sc0000616-1575043694:31516..32340 | Clytia hemisphaerica | exon |
| TCONS_00027328-exon-sc0000616-1510915933:35611..35640 | TCONS_00027328-exon-sc0000616-1510915933:35611..35640 | Clytia hemisphaerica | exon |
| TCONS_00027328-exon-sc0000616-1510915933:31516..32340 | TCONS_00027328-exon-sc0000616-1510915933:31516..32340 | Clytia hemisphaerica | exon |
| TCONS_00027328-exon-sc0000616-1491911889:35611..35640 | TCONS_00027328-exon-sc0000616-1491911889:35611..35640 | Clytia hemisphaerica | exon |
| TCONS_00027328-exon-sc0000616-1491911889:31516..32340 | TCONS_00027328-exon-sc0000616-1491911889:31516..32340 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000616 | supercontig | sc0000616:31516..35640 - |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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