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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027311 ID=TCONS_00027311|Name=TCONS_00027311|organism=Clytia hemisphaerica|type=transcript|length=1672bp
TTCGCCCACCACACGACGGGCGGAGAAAAAGGTTGGCGGGCAAGTTTTTT
TCAACAAGAGCTATATATTTTGTCTCGATGACCAAATAGTTTTACATCAA
GCAACAACATAGACAGTCTGAAAAGTAAAGACTCCAAGTACGAAGTACGA
AGCAagataatttcaaaatggcggacaaTGCAGCAGCCTCACAGGAAGAT
GATCTTAGTTTACCACGAGcGGCTGTTAACAAGATGATTAAAGAAATGAT
TCCAAATATACGAATTTCAAACGATGCACGCGAGCTGGTACTCAATTGTT
GCACAGAATTCATTCATTTAATAGCATCAGAGTCGAACGAAATATGTAAC
AAACAGACCAAAAAGACCATATCACCCGAACATGTCATCTCAGCATTAGA
TagTTTAGGCTTCCAGGATTACGTGAAGGACGTGGAAAGTGTTTATaaac
aattcaaggctcaaacACAGactcgaaaaatgaataataaaatgaaaaat
cagGGTGTGCCGGAGGAAGAGTTGTTACGACAACAGCAAGAATTATTCGC
CAGAGCACGTGAACAGCAAGCCCAGGAGGACTGGCTACACATGCAACAAC
AGCAACAGCAAGCACAACAGGCCCAGCAACAACAAGCACAACAACAACGT
TTAACAACAGGCGATCCTAATGCTCCACAAACGCAACAAATCGTACAACC
TGTCTCTACAACAACGCAACCGAAAATCGAACAACAGCAACCTCAACCTC
CATTAAATAGTGCACCTCCTTTGACCGAACCTCCTCCTATTAACTCTACT
ATACAAACGAACTTTCAACAACATTTAACACACTCAGCAATTACGAATAA
TAGCGAGAACAATAGCATGGATTATGATAGTACTACGACAAATGAAANAT
CAGCATTTACGAATAATAGCGAGAACAATAGCATGGATTATGATAGTACT
ACGACAAATGAAAATGCGTCAGATACGTAGCACTTTCTAACTTCTGACTC
TTCACTAACTTCTCCTCGTGAGGTTGGTTCAACTCTACATACAAATATGG
CTAGAGAGAAATGTGGAAACGATGGATTTAGTATATTTAGCCAACGGTGG
TATTTTATCAACATGGTGCCTGCAAAATTACTGTATCAGCAAAAAACGAC
TAGACGTTTCTAACGCCTCGAAATCACAGGCTGTGTCAAACCCTCAAGCA
ATTAGCTTACTCCATATTGGTCGAAACATCGAGATATTTTACGAATCCTA
GCTCTTTAACTGTCTCTAGCTATCGCCTTCATAAAACGAAGAGGATGTTA
CTGAGTATTACCAAGAGCAATACTTCTTACTAACTTCATTAGAAATTTCA
GAGATTTCTGAAATCCTCTTTACCTTATCTCAAGGAACTACACACATGCA
TGTTATGAATATGTATTTAACAGGATAAGACATAATTTTATAAATCAAGC
ATTTTGTTCAAATGGTTTTATATTATACGTTTTCCCCTTGTATTCTTCGA
TATTGTGCgtcaaaaaccaaaaaagattttaaaaatacaaagtaTTTCAT
GCTTTtcaatttacatttttaaaaagagattctttatttacaatgcaata
AACATACGATAGTATAAGATGGAGTACAAGACTAAAATGCTAGGTGAATA
GAATTATAAAAACTAAGTAAAT Run BLAST on NCBI protein sequence of TCONS_00027311-protein >TCONS_00027311-protein ID=TCONS_00027311-protein|Name=TCONS_00027311-protein|organism=Clytia hemisphaerica|type=polypeptide|length=270bp
MADNAAASQEDDLSLPRAAVNKMIKEMIPNIRISNDARELVLNCCTEFIH
LIASESNEICNKQTKKTISPEHVISALDSLGFQDYVKDVESVYKQFKAQT
QTRKMNNKMKNQGVPEEELLRQQQELFARAREQQAQEDWLHMQQQQQQAQ
QAQQQQAQQQRLTTGDPNAPQTQQIVQPVSTTTQPKIEQQQPQPPLNSAP
PLTEPPPINSTIQTNFQQHLTHSAITNNSENNSMDYDSTTTNEXSAFTNN
SENNSMDYDSTTTNENASDT Run BLAST on NCBI transcript from alignment at sc0000616:6719..16761+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027311 ID=TCONS_00027311|Name=TCONS_00027311|organism=Clytia hemisphaerica|type=transcript|length=10043bp|location=Sequence derived from alignment at sc0000616:6719..16761+ (Clytia hemisphaerica)
TTCGCCCACCACACGACGGGCGGAGAAAAAGGTTGGCGGGCAAGTTTTTT
TCAACAAGAGCTATATATTTTGTCTCGATGACCAAATAGTTTTACATCAA
GCAACAACATAGACAGTCTGAAAAGTAAAGACTCCAAGTACGAAGTACGA
AGCAagataatttcaaaatggcggacaaTGCAGCAGCCTCACAGGAAGAT
GATCTTAGTTTACCACGAGGTAGTTATATTTTCATTGTGTTAAAGGTCGT
TTAGTTTCAATTCCAACTATCTTAGATTTTGCCTTCTTTGATGAAATTGT
GAGACTTTTGTTGCAAgccagttttttttcttcaaatctccAGCCAATTA
AAATTTAGACAGGAGACCCCATCCTGTTTATatatctgatgtatacagga
ggaccctcccggcgctccggaaactTCCTGAGTTTTCCAGAGCAACtcaa
aaaacactatttttctctgCGGAAAGTTCCTACGGAAGCCCTGAGCGGCC
ACAACGACAACAATTTCACACAACAAATATCAATATCACtcacaacaata
tttcaaactcTTACAGTacaacaatatttcaaactctcacaacaatattt
caaactcTTACAACAATACcttgagattgggtaacttgcatcagtggagg
ctaacatgcataggcggtcatcgaaaaaatgctctgttcgcgtcccAGTC
TGGAAAGGAGGGAAATGTTACGCCAGAGCTGCGCCAACCTAACTGGAAAA
AGTTGATGGTAGCAGATCTCAAACCTAAAATCTACGCCGGAGATATCCGG
CGCACAAGTCGCTATTTCCAGACTggttcgcgtcgcaacgggtgttaaaa
atagggtggacaggccaaaattttcccctcaatttttagaaaccaaacta
attttatgtgaaagtccttacctttgtgagaaaaatgaggggtcatttat
tagaattggttaagtattcccaaagttattccattttcaaaacacaaaaa
aatcaccttttcaaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNCCgccatagccctcaaatgaatgacctggct
ggtcattaaaatacaactacgcagcccagtctcttgtttgtagtttttct
gactttctggttctttgtgagttattttccatgttttctaacttactgaa
tgacttaccgacatatcgccaccggtgggattcaaacccactaaatgcaa
agttccgatgttgtGAAACCCATTGCctccttatccactgcgccacggtt
CATGCCAAGATAGcgcttctgacggctatttatattgtacaaactgcaga
ccagactgtattaaagagaaaatcacaaaagagtgcttgtttcgagctcc
aaccctaaccctaactgataataacccaattcctagccaatctgatacgt
aaccacacccaaaccacacccatacccaaccaaCCAGGTTGCCACCTTTC
AGTGCCCTGCACGACAGgcagctgtaaaatcccacccttcatatatttgt
ttcaattcgTGAtctgtggcttaggttttttcttatcttcaatttactga
agaaagcgggaatttgatgcgagagtttaattgtcaataaagtgccgtaa
aaaatgattgaataaaagaagaactttaaaaatcttaaatattttcattt
tgaagaatatgtgcaaaaaagtgaaacatagaaaagtttcattttcattg
cattaatcgaaatgggggatttggaaaattttctatgtttagttttttgc
acaaacccctgtaactatggggaaagcaccctgttgctaagatgttggct
tgacatcgaaaatgaaaccactcaaaacaaaagtaaaatcggcccgtact
cgaaattccgtaatcttgatatacaagtttaagtctatactgtctAAGAT
CGAATAGAAAATACTTGCAAATAAGGTGACTGTGGTGCAGTCTCCTCCCA
CATTTCATGCAGTAGTTGCCATCGCAGATTTCTCCGCGATACTCAATGAC
GACTTATACCAGACTCTCTCTGTAGTTTTATTGTAACACAAGGCGTCCCT
ACATGTGTTGTAACTTAAGGTCCTGTCCTGTCCTCATGGAAGATTTTTCA
TCATTAACAATACGTAAAAAATCACTGGTGGAGAGAGTACTTGAGATTTT
TTCCGGTTTCTTCATATTGTTGTGAGAATgttgatattgttgtgagaatA
TTATGATATTGCTGTGggaattttgatattgttgtgagaatattgatatt
gttgtgGAGATTGTTATATTGTTGAGATTTTAATATTGTTGAGATTTTAA
TATTGTTGTGAGAATTTTGCGAGTGATTAATATTGTTGTGTgaaattgtt
gttgtttttgtggcTGCTCAGGGCTTCCGTAAGTTCCAGAGCTCTTCCGG
TGCTTCcggagcaagtgatttttaacacgttctaaaaaaccgtttaaaca
tggttacaaaaaatattcaaaatattgatatgatggtattaatgaaattg
aatatgtatccGGAAGCATCACTGgtagaaatattaaaaattcaaaaatg
tgaGGTTTCACTATCCATGAGTTagctgattttttaaaaatttgcgCGTG
TGCAGTTAGTTTTCACATGATTAGCACAGCGAGCGCTATcgtaaatttga
aacaaaatggctgttggccgGAAGTTTAAATACATGtggttttgatgtgg
tttttagtagtcttgaaagtctttagagcttgtgaaagagtttttatggt
aagtttaTTATGtgtgtcaacaagggttcagctattttttgttttttcta
agattatgagcttggattcccaggctaatttAAATAGGGCGGCAAGGGAT
TCTGTTTCTTTGGAATTTACCAAattaaaaaagttgttaaagACAGTATA
GACTTAACTCTTCATACAGAAATTACGGGAAATGCatattttggactttg
taccctatgctgcacgcaagcacttaagctaaagtcccgcaaagcaggaa
aaaagttttttgaagtttgcaaaaaaacgccacatagaagatctttcaaa
ttcagtatgtaaaaaatacaacttttgtatttttcctttatttgcaaaag
ttctaggaatgaaaataaagggataatgataattgaataatatccactga
tgatccacATCACTATTGTAAAAATTTTCGTaagtttgtaaattttttcG
ATAATTGTGTATTGTATATACGTACACCGGACAAGACACAATGTGATTTG
ATACTGTAAGCCTGATGGAATTGGATTTCAAGTTTACTGTAAAATCGACT
TTCCAAATTCGAAATGGGCGAGTTGTCTAGTATTCATTATTTTACAACAC
ATAGTCAAATTTAAAGCTACatatcatctttattttattttgatttcata
ttgatttttttattgcttataagtattaaaatctgaaaacagaCAAACAA
AAATGCTTTAAAGAATATGCATCATGAAATCAATCTTTGGAGGATGCTTT
GATCTATAGACTTGTGCTTAAAATCCTTATATGAATCTATTTCAACCAAC
GAGCTTTATATAAGCACtttttgattggagttttttgaaagtacAGTACC
CTAATGCTACTACTCAATAGGGGTGAAAATGCATCTAAGAGAGCTAGATC
TATATTTATTCCTGCATTACTTGTGATGTATGCCATTTGACGATAACTCA
AACCTCTTGTAATATAGTTTTGAACCTCAAGTTCAAATTAAAGTTGGCTA
ATCTTTTGTAGTTAGAAAAATTCTTTCACAGCTACTTCGAGGCTCAGAAT
AGTTGACCTAATAGGTTAAGCCAAGTGCGTTACATACGTCCACTCAACTA
TCTAATATCCAATTAAATATAATCTCTCCTATTACACTCCTATTTAATAA
TGCTTAACTTTGATCACTTCCagggggggggtgaagcagttagtacaaga
catcatgcctactaacTGCTTTCTCGGAAGAAGTTAGAAACACCACCACC
TTGGTACACTTAGTACAGTTAGTACTAGCTGAATttagccttgaaaaagg
ctttcgaccttcataaattcaataaaatcaaagaaaataaaatttaatat
cttaaaaatgattcaattttccatCATAGCTTTCAATagcaaaaaacaac
attttagaaaatcaaatttctattgcaaccagcaaattgtttttaagatt
ttaaaaaaaaatttcgaaaatttgaaaaaataatctacttcccaaaaaat
ttttttggtaaaatacggtctttttttttaattttctcacaaaatcctat
tttttacacagttagtaccaaaatttggcaaatttttagcaggggaccac
ccttttttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNAGTTAGTACATCTGAGTACTAAGTga
ttttatccaattcatatggcacaccaccacggtactaaccggcatgatgt
cttgtactaactgcttcacccccccctGTCACTTCTACTATTCAGGAGAG
TCTACTTTTAAGAAAGTTATCATCCTGGGACTGTATGAAAACGATACCGT
TCTCTCTTTTTAAAAGGTGAATTAGAATTAGGAATCTAAGAactgaaaat
ttgtttttgaatgaatatGTTTATCACTGGGCGAAGGACATCAGAGATTT
GTGTCAcatttatgttttctttttttcatttagcGGCTGTTAACAAGATG
ATTAAAGAAATGATTCCAAATATACGAATTTCAAACGATGCACGCGAGCT
GGTACTCAATTGTTGCACAGGTAACAAGTTTTGAACAATATTTTAGGAAC
TATAGATAACTTGTAACGTAAAGCAAATAGTATTCTATCCTGTCCTCCCC
TTTTAATTTTCCGGCAAAATTGTTAAATGTATTGCTACTACGCAATATAT
TGCTGGTGAAAAATATTCAATACGTTTGAACACTAATAAATTACCAGCAC
TTTCCAATATTTGTCTGACAATATATAGCGTAGTGTAGAGAGGGAGAAGG
AGCATTTTGAAGATTCCATCAAGCCAAAAGCTTGATGGAATTGAGCTTTG
ATTCAATGCGTTTTTTGTGGTCCGAGATGGAATTTAAAATTCCAGGCAGT
TCCAGGAAGATTTTTTCTTCAGGCTCAACTAaataattcttttgtgtttt
gttttcagAATTCATTCATTTAATAGCATCAGAGTCGAACGAAATATGTA
ACAAACAGACCAAAAAGACCATATCACCCGAACATGTCATCTCAGCATTA
GATGTAAGTTTGGGTATCTTCATGGGAGGACTTGATTCTTGAAATGTTAT
TCTTCTTTATATCCTGCTATTAAAATGATTAGTTATTCTTTGTTTATAAG
CTTTTTAGGTCAGGTTTTTTGGTATTACGTTTCCCCCTAAAAAACCTTTT
CAATTAAACGACTGATTTGATGTGAAAAAAGGAATCTGTAAAGAAATTTC
ACGAATCCCTTCTTCCCAtctaaaataaaagttttcGACCGTTAGAGAGA
CTGATACCTTTTTGCTATGGAAATAGCCTCATTGTCACCtatgattttag
atttttctgcACAATCTGATTTCAAtgatgactttttcttttttgaagag
TTTAGGCTTCCAGGATTACGTGAAGGACGTGGAAAGTGTTTATaaacaat
tcaaggctcaaacACAGGTATGTGTCTTTCGTTCGATCGCTGACAAGATA
AACAAGATTTGTGGTGTTTACTTATGCCCTTTATGTTGTGATTTAAATAG
TTTTGAATAGATCTTGTGTTTAtggaaaatatggaaaaaattcCAGGATT
AACTTAACGTCTTGTCCAACCTCAAATTTGTACTAACTTCtctttattat
ttttcagactcgaaaaatgaataataaaatgaaaaatcaggTAACTAAAT
CTTTCATCATGTCattcgaatttctttttttaagccCAGCTGTTGGTGTC
GAAGTTAGGGGGTTAATTAAGTCCCCTCTCGCTTAAGTGAACCACACCCA
ATGGCTCACTAGTCTTGAAAAAAGACAATACCTCAAATCATCAGTAATTA
ATCGTCAACTTAGCTGCTGGGTTTAAGTTAAGGGTTCAGTTCACGGTTTA
GTTCACTTTGTCGATTATTTACCTTAGGGTGTGCCGGAGGAAGAGTTGTT
ACGACAACAGCAAGAATTATTCGCCAGAGCACGTGAACAGCAAGCCCAGG
TATGATTCATTCTTATTTACGTATGATAAACGTATAAAGTAATTGCTGAC
GGTTCTGTCCAAGTCAATGTGATATTTTTAAACTGAATCAAAAGAGGCAT
CCTTTCAAACTGAGACAAGGGGTGATTCTTAAATTGAGCTgagaaaaact
tcaaacaatcgTTTATTCGTCTGTCTACTCATCCATTTTCTTCGTACTTA
AATGGGCTTGGTAGCTTTTTTCAGCGATCTTTATTATTTGCAATTGTGAA
GTATCAGacacatagtgtcctcctgggttggttccccccactaaaaatca
aaatttttctccattcccccctcttttatttcccccaccatatttcaaaa
tttttcggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttcaaaattttt
cggttcccccctcttttttgaattcccccagctatttgaagattttgcgg
ttccccatatggttaacataaaaatgccttaaatcaagttttttttttgg
aaagcttgaaaaaatagcctttaaagtgctggaaaaatgaaattgtattg
aaaagttggtttatcccaaaagatttgctgattttattgcttaaacaggt
ttTGCAACAAGATCACCTTGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcccccccccccttta
taaaggggggggaggacactatgagaCAACGGTCTAAGAGAATCTTTCCT
ATATAAATTTCCAATTTAAAGCAACCCAGTGCTTTTCAATGTGACCTCAG
CTGATATGGCTCATATTATGACGGATAGGACATTAGCTTCCTGAGCAAAC
GTATATCAATATCATATAGTGATGATTTGATCTTTCGAATCGTTGATTAT
CCAATTGCATTGGAAATAATTTTCGACGAAAGTATAGCGTATTCAACTGT
TTGACGCTgacaaaaaagttttcattcaaaGCCAAAAGAGTCAACAAAAA
CACATTTCTAAGTTAAAACATATAGAGAAGAGAGTTTTACTGCGTTTCAA
GTAAAAGAACACGAATAGATGAAACCTTCTACCTTTTATCAATCAGGAGG
ACTGGCTACACATGCAACAACAGCAACAGCAAGCACAACAGGCCCAGCAA
CAACAAGCACAACAACAACGTTTAACAACAGGCGATCCTAATGCTCCACA
AACGCAACAAATCGTACAACCTGTCTCTACAACAACGCAACCGAAAATCG
AACAACAGCAACCTCAACCTCCATTAAATAGTGCACCTCCTTTGACCGAA
CCTCCTCCTATTAACTCTACTATACAAACGAACTTTCAACAACATTTAAC
ACACTCAGCAATTACGAATAATAGCGAGAACAATAGCATGGATTATGATA
GTACTACGACAAATGAAANATCAGCATTTACGAATAATAGCGAGAACAAT
AGCATGGATTATGATAGTACTACGACAAATGAAAATGCGTCAGATACGTA
GCACTTTCTAACTTCTGACTCTTCACTAACTTCTCCTCGTGAGGTTGGTT
CAACTCTACATACAAATATGGCTAGAGAGAAATGTGGAAACGATGGATTT
AGTATATTTAGCCAACGGTGGTATTTTATCAACATGGTGCCTGCAAAATT
ACTGTATCAGCAAAAAACGACTAGACGTTTCTAACGCCTCGAAATCACAG
GCTGTGTCAAACCCTCAAGCAATTAGCTTACTCCATATTGGTCGAAACAT
CGAGATATTTTACGAATCCTAGCTCTTTAACTGTCTCTAGCTATCGCCTT
CATAAAACGAAGAGGATGTTACTGAGTATTACCAAGAGCAATACTTCTTA
CTAACTTCATTAGAAATTTCAGAGATTTCTGAAATCCTCTTTACCTTATC
TCAAGGAACTACACACATGCATGTTATGAATATGTATTTAACAGGATAAG
ACATAATTTTATAAATCAAGCATTTTGTTCAAATGGTTTTATATTATACG
TTTTCCCCTTGTATTCTTCGATATTGTGCgtcaaaaaccaaaaaagattt
taaaaatacaaagtaTTTCATGCTTTtcaatttacatttttaaaaagaga
ttctttatttacaatgcaataAACATACGATAGTATAAGATGGAGTACAA
GACTAAAATGCTAGGTGAATAGAATTATAAAAACTAAGTAAAT Coding sequence (CDS) from alignment at sc0000616:6719..16761+ >TCONS_00027311 ID=TCONS_00027311|Name=TCONS_00027311|organism=Clytia hemisphaerica|type=CDS|length=5691bp|location=Sequence derived from alignment at sc0000616:6719..16761+ (Clytia hemisphaerica)
atggcggacaaTGCAGCAGCCTCACAGGAAGATGATCTTAGTTTACCACG
AGcGGCTGTTAACAAGATGATTAAAGAAATGATTCCAAATATACGAATTT
CAAACGATGCACGCGAGCTGGTACTCAATTGTTGCACAGAATTCATTCAT
TTAATAGCATCAGAGTCGAACGAAATATGTAACAAACAGACCAAAAAGAC
CATATCACCCGAACATGTCATCTCAGCATTAGATagTTTAGGCTTCCAGG
ATTACGTGAAGGACGTGGAAAGTGTTTATaaacaattcaaggctcaaacA
CAGactcgaaaaatgaataataaaatgaaaaatcagGGTGTGCCGGAGGA
AGAGTTGTTACGACAACAGCAAGAATTATTCGCCAGAGCACGTGAACAGC
AAGCCCAGGAGGACTGGCTACACATGCAACAACAGCAACAGCAAGCACAA
CAGGCCCAGCAACAACAAGCACAACAACAACGTTTAACAACAGGCGATCC
TAATGCTCCACAAACGCAACAAATCGTACAACCTGTCTCTACAACAACGC
AACCGAAAATCGAACAACAGCAACCTCAACCTCCATTAAATAGTGCACCT
CCTTTGACCGAACCTCCTCCTATTAACTCTACTATACAAACGAACTTTCA
ACAACATTTAACACACTCAGCAATTACGAATAATAGCGAGAACAATAGCA
TGGATTATGATAGTACTACGACAAATGAAANATCAGCATTTACGAATAAT
AGCGAGAACAATAGCATGGATTATGATAGTACTACGACAAATGAAAATGC
GTCAGATACGTAGatggcggacaaTGCAGCAGCCTCACAGGAAGATGATC
TTAGTTTACCACGAGcGGCTGTTAACAAGATGATTAAAGAAATGATTCCA
AATATACGAATTTCAAACGATGCACGCGAGCTGGTACTCAATTGTTGCAC
AGAATTCATTCATTTAATAGCATCAGAGTCGAACGAAATATGTAACAAAC
AGACCAAAAAGACCATATCACCCGAACATGTCATCTCAGCATTAGATagT
TTAGGCTTCCAGGATTACGTGAAGGACGTGGAAAGTGTTTATaaacaatt
caaggctcaaacACAGactcgaaaaatgaataataaaatgaaaaatcagG
GTGTGCCGGAGGAAGAGTTGTTACGACAACAGCAAGAATTATTCGCCAGA
GCACGTGAACAGCAAGCCCAGGAGGACTGGCTACACATGCAACAACAGCA
ACAGCAAGCACAACAGGCCCAGCAACAACAAGCACAACAACAACGTTTAA
CAACAGGCGATCCTAATGCTCCACAAACGCAACAAATCGTACAACCTGTC
TCTACAACAACGCAACCGAAAATCGAACAACAGCAACCTCAACCTCCATT
AAATAGTGCACCTCCTTTGACCGAACCTCCTCCTATTAACTCTACTATAC
AAACGAACTTTCAACAACATTTAACACACTCAGCAATTACGAATAATAGC
GAGAACAATAGCATGGATTATGATAGTACTACGACAAATGAAANATCAGC
ATTTACGAATAATAGCGAGAACAATAGCATGGATTATGATAGTACTACGA
CAAATGAAAATGCGTCAGATACGTAGatggcggacaaTGCAGCAGCCTCA
CAGGAAGATGATCTTAGTTTACCACGAGcGGCTGTTAACAAGATGATTAA
AGAAATGATTCCAAATATACGAATTTCAAACGATGCACGCGAGCTGGTAC
TCAATTGTTGCACAGAATTCATTCATTTAATAGCATCAGAGTCGAACGAA
ATATGTAACAAACAGACCAAAAAGACCATATCACCCGAACATGTCATCTC
AGCATTAGATagTTTAGGCTTCCAGGATTACGTGAAGGACGTGGAAAGTG
TTTATaaacaattcaaggctcaaacACAGactcgaaaaatgaataataaa
atgaaaaatcagGGTGTGCCGGAGGAAGAGTTGTTACGACAACAGCAAGA
ATTATTCGCCAGAGCACGTGAACAGCAAGCCCAGGAGGACTGGCTACACA
TGCAACAACAGCAACAGCAAGCACAACAGGCCCAGCAACAACAAGCACAA
CAACAACGTTTAACAACAGGCGATCCTAATGCTCCACAAACGCAACAAAT
CGTACAACCTGTCTCTACAACAACGCAACCGAAAATCGAACAACAGCAAC
CTCAACCTCCATTAAATAGTGCACCTCCTTTGACCGAACCTCCTCCTATT
AACTCTACTATACAAACGAACTTTCAACAACATTTAACACACTCAGCAAT
TACGAATAATAGCGAGAACAATAGCATGGATTATGATAGTACTACGACAA
ATGAAANATCAGCATTTACGAATAATAGCGAGAACAATAGCATGGATTAT
GATAGTACTACGACAAATGAAAATGCGTCAGATACGTAGatggcggacaa
TGCAGCAGCCTCACAGGAAGATGATCTTAGTTTACCACGAGcGGCTGTTA
ACAAGATGATTAAAGAAATGATTCCAAATATACGAATTTCAAACGATGCA
CGCGAGCTGGTACTCAATTGTTGCACAGAATTCATTCATTTAATAGCATC
AGAGTCGAACGAAATATGTAACAAACAGACCAAAAAGACCATATCACCCG
AACATGTCATCTCAGCATTAGATagTTTAGGCTTCCAGGATTACGTGAAG
GACGTGGAAAGTGTTTATaaacaattcaaggctcaaacACAGactcgaaa
aatgaataataaaatgaaaaatcagGGTGTGCCGGAGGAAGAGTTGTTAC
GACAACAGCAAGAATTATTCGCCAGAGCACGTGAACAGCAAGCCCAGGAG
GACTGGCTACACATGCAACAACAGCAACAGCAAGCACAACAGGCCCAGCA
ACAACAAGCACAACAACAACGTTTAACAACAGGCGATCCTAATGCTCCAC
AAACGCAACAAATCGTACAACCTGTCTCTACAACAACGCAACCGAAAATC
GAACAACAGCAACCTCAACCTCCATTAAATAGTGCACCTCCTTTGACCGA
ACCTCCTCCTATTAACTCTACTATACAAACGAACTTTCAACAACATTTAA
CACACTCAGCAATTACGAATAATAGCGAGAACAATAGCATGGATTATGAT
AGTACTACGACAAATGAAANATCAGCATTTACGAATAATAGCGAGAACAA
TAGCATGGATTATGATAGTACTACGACAAATGAAAATGCGTCAGATACGT
AGatggcggacaaTGCAGCAGCCTCACAGGAAGATGATCTTAGTTTACCA
CGAGcGGCTGTTAACAAGATGATTAAAGAAATGATTCCAAATATACGAAT
TTCAAACGATGCACGCGAGCTGGTACTCAATTGTTGCACAGAATTCATTC
ATTTAATAGCATCAGAGTCGAACGAAATATGTAACAAACAGACCAAAAAG
ACCATATCACCCGAACATGTCATCTCAGCATTAGATagTTTAGGCTTCCA
GGATTACGTGAAGGACGTGGAAAGTGTTTATaaacaattcaaggctcaaa
cACAGactcgaaaaatgaataataaaatgaaaaatcagGGTGTGCCGGAG
GAAGAGTTGTTACGACAACAGCAAGAATTATTCGCCAGAGCACGTGAACA
GCAAGCCCAGGAGGACTGGCTACACATGCAACAACAGCAACAGCAAGCAC
AACAGGCCCAGCAACAACAAGCACAACAACAACGTTTAACAACAGGCGAT
CCTAATGCTCCACAAACGCAACAAATCGTACAACCTGTCTCTACAACAAC
GCAACCGAAAATCGAACAACAGCAACCTCAACCTCCATTAAATAGTGCAC
CTCCTTTGACCGAACCTCCTCCTATTAACTCTACTATACAAACGAACTTT
CAACAACATTTAACACACTCAGCAATTACGAATAATAGCGAGAACAATAG
CATGGATTATGATAGTACTACGACAAATGAAANATCAGCATTTACGAATA
ATAGCGAGAACAATAGCATGGATTATGATAGTACTACGACAAATGAAAAT
GCGTCAGATACGTAGatggcggacaaTGCAGCAGCCTCACAGGAAGATGA
TCTTAGTTTACCACGAGcGGCTGTTAACAAGATGATTAAAGAAATGATTC
CAAATATACGAATTTCAAACGATGCACGCGAGCTGGTACTCAATTGTTGC
ACAGAATTCATTCATTTAATAGCATCAGAGTCGAACGAAATATGTAACAA
ACAGACCAAAAAGACCATATCACCCGAACATGTCATCTCAGCATTAGATa
gTTTAGGCTTCCAGGATTACGTGAAGGACGTGGAAAGTGTTTATaaacaa
ttcaaggctcaaacACAGactcgaaaaatgaataataaaatgaaaaatca
gGGTGTGCCGGAGGAAGAGTTGTTACGACAACAGCAAGAATTATTCGCCA
GAGCACGTGAACAGCAAGCCCAGGAGGACTGGCTACACATGCAACAACAG
CAACAGCAAGCACAACAGGCCCAGCAACAACAAGCACAACAACAACGTTT
AACAACAGGCGATCCTAATGCTCCACAAACGCAACAAATCGTACAACCTG
TCTCTACAACAACGCAACCGAAAATCGAACAACAGCAACCTCAACCTCCA
TTAAATAGTGCACCTCCTTTGACCGAACCTCCTCCTATTAACTCTACTAT
ACAAACGAACTTTCAACAACATTTAACACACTCAGCAATTACGAATAATA
GCGAGAACAATAGCATGGATTATGATAGTACTACGACAAATGAAANATCA
GCATTTACGAATAATAGCGAGAACAATAGCATGGATTATGATAGTACTAC
GACAAATGAAAATGCGTCAGATACGTAGatggcggacaaTGCAGCAGCCT
CACAGGAAGATGATCTTAGTTTACCACGAGcGGCTGTTAACAAGATGATT
AAAGAAATGATTCCAAATATACGAATTTCAAACGATGCACGCGAGCTGGT
ACTCAATTGTTGCACAGAATTCATTCATTTAATAGCATCAGAGTCGAACG
AAATATGTAACAAACAGACCAAAAAGACCATATCACCCGAACATGTCATC
TCAGCATTAGATagTTTAGGCTTCCAGGATTACGTGAAGGACGTGGAAAG
TGTTTATaaacaattcaaggctcaaacACAGactcgaaaaatgaataata
aaatgaaaaatcagGGTGTGCCGGAGGAAGAGTTGTTACGACAACAGCAA
GAATTATTCGCCAGAGCACGTGAACAGCAAGCCCAGGAGGACTGGCTACA
CATGCAACAACAGCAACAGCAAGCACAACAGGCCCAGCAACAACAAGCAC
AACAACAACGTTTAACAACAGGCGATCCTAATGCTCCACAAACGCAACAA
ATCGTACAACCTGTCTCTACAACAACGCAACCGAAAATCGAACAACAGCA
ACCTCAACCTCCATTAAATAGTGCACCTCCTTTGACCGAACCTCCTCCTA
TTAACTCTACTATACAAACGAACTTTCAACAACATTTAACACACTCAGCA
ATTACGAATAATAGCGAGAACAATAGCATGGATTATGATAGTACTACGAC
AAATGAAANATCAGCATTTACGAATAATAGCGAGAACAATAGCATGGATT
ATGATAGTACTACGACAAATGAAAATGCGTCAGATACGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027311-exon-sc0000616-1491911889:6719..6937 | TCONS_00027311-exon-sc0000616-1491911889:6719..6937 | Clytia hemisphaerica | exon |
| TCONS_00027311-exon-sc0000616-1510915933:6719..6937 | TCONS_00027311-exon-sc0000616-1510915933:6719..6937 | Clytia hemisphaerica | exon |
| TCONS_00027311-exon-sc0000616-1575043694:6719..6937 | TCONS_00027311-exon-sc0000616-1575043694:6719..6937 | Clytia hemisphaerica | exon |
| TCONS_00027311-exon-sc0000616-1491911889:12502..12588 | TCONS_00027311-exon-sc0000616-1491911889:12502..12588 | Clytia hemisphaerica | exon |
| TCONS_00027311-exon-sc0000616-1510915933:12502..12588 | TCONS_00027311-exon-sc0000616-1510915933:12502..12588 | Clytia hemisphaerica | exon |
| TCONS_00027311-exon-sc0000616-1575043694:12502..12588 | TCONS_00027311-exon-sc0000616-1575043694:12502..12588 | Clytia hemisphaerica | exon |
| TCONS_00027311-exon-sc0000616-1491911889:12977..13071 | TCONS_00027311-exon-sc0000616-1491911889:12977..13071 | Clytia hemisphaerica | exon |
| TCONS_00027311-exon-sc0000616-1510915933:12977..13071 | TCONS_00027311-exon-sc0000616-1510915933:12977..13071 | Clytia hemisphaerica | exon |
| TCONS_00027311-exon-sc0000616-1575043694:12977..13071 | TCONS_00027311-exon-sc0000616-1575043694:12977..13071 | Clytia hemisphaerica | exon |
| TCONS_00027311-exon-sc0000616-1491911889:13417..13485 | TCONS_00027311-exon-sc0000616-1491911889:13417..13485 | Clytia hemisphaerica | exon |
| TCONS_00027311-exon-sc0000616-1510915933:13417..13485 | TCONS_00027311-exon-sc0000616-1510915933:13417..13485 | Clytia hemisphaerica | exon |
| TCONS_00027311-exon-sc0000616-1575043694:13417..13485 | TCONS_00027311-exon-sc0000616-1575043694:13417..13485 | Clytia hemisphaerica | exon |
| TCONS_00027311-exon-sc0000616-1491911889:13676..13708 | TCONS_00027311-exon-sc0000616-1491911889:13676..13708 | Clytia hemisphaerica | exon |
| TCONS_00027311-exon-sc0000616-1510915933:13676..13708 | TCONS_00027311-exon-sc0000616-1510915933:13676..13708 | Clytia hemisphaerica | exon |
| TCONS_00027311-exon-sc0000616-1575043694:13676..13708 | TCONS_00027311-exon-sc0000616-1575043694:13676..13708 | Clytia hemisphaerica | exon |
| TCONS_00027311-exon-sc0000616-1491911889:13946..14017 | TCONS_00027311-exon-sc0000616-1491911889:13946..14017 | Clytia hemisphaerica | exon |
| TCONS_00027311-exon-sc0000616-1510915933:13946..14017 | TCONS_00027311-exon-sc0000616-1510915933:13946..14017 | Clytia hemisphaerica | exon |
| TCONS_00027311-exon-sc0000616-1575043694:13946..14017 | TCONS_00027311-exon-sc0000616-1575043694:13946..14017 | Clytia hemisphaerica | exon |
| TCONS_00027311-exon-sc0000616-1491911889:15665..16761 | TCONS_00027311-exon-sc0000616-1491911889:15665..16761 | Clytia hemisphaerica | exon |
| TCONS_00027311-exon-sc0000616-1510915933:15665..16761 | TCONS_00027311-exon-sc0000616-1510915933:15665..16761 | Clytia hemisphaerica | exon |
| TCONS_00027311-exon-sc0000616-1575043694:15665..16761 | TCONS_00027311-exon-sc0000616-1575043694:15665..16761 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000616 | supercontig | sc0000616:6719..16761 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0046982 | protein heterodimerization activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0046982 |
protein heterodimerization activity |
Blast
BLAST of TCONS_00027311 vs. Swiss-Prot (Human)
Match: NC2B (Protein Dr1 OS=Homo sapiens GN=DR1 PE=1 SV=1) HSP 1 Score: 152.14 bits (383), Expect = 1.191e-42 Identity = 66/112 (58.93%), Postives = 93/112 (83.04%), Query Frame = 3
Query: 180 AAASQEDDLSLPRAAVNKMIKEMIPNIRISNDARELVLNCCTEFIHLIASESNEICNKQTKKTISPEHVISALDSLGFQDYVKDVESVYKQFK-AQTQTRKMNNKMKNQGVP 512
+++ +DDL++PRAA+NKMIKE +PN+R++NDARELV+NCCTEFIHLI+SE+NEICNK KKTISPEHVI AL+SLGF Y+ +V+ V ++ K + RK +++++N G+P
Sbjct: 3 SSSGNDDDLTIPRAAINKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSYISEVKEVLQECKTVALKRRKASSRLENLGIP 114
The following BLAST results are available for this feature:
|
