XLOC_015373 (gene) - C. hemisphaerica

Overview
NameXLOC_015373
Unique NameXLOC_015373
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000616:6719..16761+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_015373 ID=XLOC_015373|Name=XLOC_015373|organism=Clytia hemisphaerica|type=gene|length=10043bp|location=Sequence derived from alignment at sc0000616:6719..16761+ (Clytia hemisphaerica)
TTCGCCCACCACACGACGGGCGGAGAAAAAGGTTGGCGGGCAAGTTTTTT
TCAACAAGAGCTATATATTTTGTCTCGATGACCAAATAGTTTTACATCAA
GCAACAACATAGACAGTCTGAAAAGTAAAGACTCCAAGTACGAAGTACGA
AGCAagataatttcaaaatggcggacaaTGCAGCAGCCTCACAGGAAGAT
GATCTTAGTTTACCACGAGGTAGTTATATTTTCATTGTGTTAAAGGTCGT
TTAGTTTCAATTCCAACTATCTTAGATTTTGCCTTCTTTGATGAAATTGT
GAGACTTTTGTTGCAAgccagttttttttcttcaaatctccAGCCAATTA
AAATTTAGACAGGAGACCCCATCCTGTTTATatatctgatgtatacagga
ggaccctcccggcgctccggaaactTCCTGAGTTTTCCAGAGCAACtcaa
aaaacactatttttctctgCGGAAAGTTCCTACGGAAGCCCTGAGCGGCC
ACAACGACAACAATTTCACACAACAAATATCAATATCACtcacaacaata
tttcaaactcTTACAGTacaacaatatttcaaactctcacaacaatattt
caaactcTTACAACAATACcttgagattgggtaacttgcatcagtggagg
ctaacatgcataggcggtcatcgaaaaaatgctctgttcgcgtcccAGTC
TGGAAAGGAGGGAAATGTTACGCCAGAGCTGCGCCAACCTAACTGGAAAA
AGTTGATGGTAGCAGATCTCAAACCTAAAATCTACGCCGGAGATATCCGG
CGCACAAGTCGCTATTTCCAGACTggttcgcgtcgcaacgggtgttaaaa
atagggtggacaggccaaaattttcccctcaatttttagaaaccaaacta
attttatgtgaaagtccttacctttgtgagaaaaatgaggggtcatttat
tagaattggttaagtattcccaaagttattccattttcaaaacacaaaaa
aatcaccttttcaaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNCCgccatagccctcaaatgaatgacctggct
ggtcattaaaatacaactacgcagcccagtctcttgtttgtagtttttct
gactttctggttctttgtgagttattttccatgttttctaacttactgaa
tgacttaccgacatatcgccaccggtgggattcaaacccactaaatgcaa
agttccgatgttgtGAAACCCATTGCctccttatccactgcgccacggtt
CATGCCAAGATAGcgcttctgacggctatttatattgtacaaactgcaga
ccagactgtattaaagagaaaatcacaaaagagtgcttgtttcgagctcc
aaccctaaccctaactgataataacccaattcctagccaatctgatacgt
aaccacacccaaaccacacccatacccaaccaaCCAGGTTGCCACCTTTC
AGTGCCCTGCACGACAGgcagctgtaaaatcccacccttcatatatttgt
ttcaattcgTGAtctgtggcttaggttttttcttatcttcaatttactga
agaaagcgggaatttgatgcgagagtttaattgtcaataaagtgccgtaa
aaaatgattgaataaaagaagaactttaaaaatcttaaatattttcattt
tgaagaatatgtgcaaaaaagtgaaacatagaaaagtttcattttcattg
cattaatcgaaatgggggatttggaaaattttctatgtttagttttttgc
acaaacccctgtaactatggggaaagcaccctgttgctaagatgttggct
tgacatcgaaaatgaaaccactcaaaacaaaagtaaaatcggcccgtact
cgaaattccgtaatcttgatatacaagtttaagtctatactgtctAAGAT
CGAATAGAAAATACTTGCAAATAAGGTGACTGTGGTGCAGTCTCCTCCCA
CATTTCATGCAGTAGTTGCCATCGCAGATTTCTCCGCGATACTCAATGAC
GACTTATACCAGACTCTCTCTGTAGTTTTATTGTAACACAAGGCGTCCCT
ACATGTGTTGTAACTTAAGGTCCTGTCCTGTCCTCATGGAAGATTTTTCA
TCATTAACAATACGTAAAAAATCACTGGTGGAGAGAGTACTTGAGATTTT
TTCCGGTTTCTTCATATTGTTGTGAGAATgttgatattgttgtgagaatA
TTATGATATTGCTGTGggaattttgatattgttgtgagaatattgatatt
gttgtgGAGATTGTTATATTGTTGAGATTTTAATATTGTTGAGATTTTAA
TATTGTTGTGAGAATTTTGCGAGTGATTAATATTGTTGTGTgaaattgtt
gttgtttttgtggcTGCTCAGGGCTTCCGTAAGTTCCAGAGCTCTTCCGG
TGCTTCcggagcaagtgatttttaacacgttctaaaaaaccgtttaaaca
tggttacaaaaaatattcaaaatattgatatgatggtattaatgaaattg
aatatgtatccGGAAGCATCACTGgtagaaatattaaaaattcaaaaatg
tgaGGTTTCACTATCCATGAGTTagctgattttttaaaaatttgcgCGTG
TGCAGTTAGTTTTCACATGATTAGCACAGCGAGCGCTATcgtaaatttga
aacaaaatggctgttggccgGAAGTTTAAATACATGtggttttgatgtgg
tttttagtagtcttgaaagtctttagagcttgtgaaagagtttttatggt
aagtttaTTATGtgtgtcaacaagggttcagctattttttgttttttcta
agattatgagcttggattcccaggctaatttAAATAGGGCGGCAAGGGAT
TCTGTTTCTTTGGAATTTACCAAattaaaaaagttgttaaagACAGTATA
GACTTAACTCTTCATACAGAAATTACGGGAAATGCatattttggactttg
taccctatgctgcacgcaagcacttaagctaaagtcccgcaaagcaggaa
aaaagttttttgaagtttgcaaaaaaacgccacatagaagatctttcaaa
ttcagtatgtaaaaaatacaacttttgtatttttcctttatttgcaaaag
ttctaggaatgaaaataaagggataatgataattgaataatatccactga
tgatccacATCACTATTGTAAAAATTTTCGTaagtttgtaaattttttcG
ATAATTGTGTATTGTATATACGTACACCGGACAAGACACAATGTGATTTG
ATACTGTAAGCCTGATGGAATTGGATTTCAAGTTTACTGTAAAATCGACT
TTCCAAATTCGAAATGGGCGAGTTGTCTAGTATTCATTATTTTACAACAC
ATAGTCAAATTTAAAGCTACatatcatctttattttattttgatttcata
ttgatttttttattgcttataagtattaaaatctgaaaacagaCAAACAA
AAATGCTTTAAAGAATATGCATCATGAAATCAATCTTTGGAGGATGCTTT
GATCTATAGACTTGTGCTTAAAATCCTTATATGAATCTATTTCAACCAAC
GAGCTTTATATAAGCACtttttgattggagttttttgaaagtacAGTACC
CTAATGCTACTACTCAATAGGGGTGAAAATGCATCTAAGAGAGCTAGATC
TATATTTATTCCTGCATTACTTGTGATGTATGCCATTTGACGATAACTCA
AACCTCTTGTAATATAGTTTTGAACCTCAAGTTCAAATTAAAGTTGGCTA
ATCTTTTGTAGTTAGAAAAATTCTTTCACAGCTACTTCGAGGCTCAGAAT
AGTTGACCTAATAGGTTAAGCCAAGTGCGTTACATACGTCCACTCAACTA
TCTAATATCCAATTAAATATAATCTCTCCTATTACACTCCTATTTAATAA
TGCTTAACTTTGATCACTTCCagggggggggtgaagcagttagtacaaga
catcatgcctactaacTGCTTTCTCGGAAGAAGTTAGAAACACCACCACC
TTGGTACACTTAGTACAGTTAGTACTAGCTGAATttagccttgaaaaagg
ctttcgaccttcataaattcaataaaatcaaagaaaataaaatttaatat
cttaaaaatgattcaattttccatCATAGCTTTCAATagcaaaaaacaac
attttagaaaatcaaatttctattgcaaccagcaaattgtttttaagatt
ttaaaaaaaaatttcgaaaatttgaaaaaataatctacttcccaaaaaat
ttttttggtaaaatacggtctttttttttaattttctcacaaaatcctat
tttttacacagttagtaccaaaatttggcaaatttttagcaggggaccac
ccttttttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNAGTTAGTACATCTGAGTACTAAGTga
ttttatccaattcatatggcacaccaccacggtactaaccggcatgatgt
cttgtactaactgcttcacccccccctGTCACTTCTACTATTCAGGAGAG
TCTACTTTTAAGAAAGTTATCATCCTGGGACTGTATGAAAACGATACCGT
TCTCTCTTTTTAAAAGGTGAATTAGAATTAGGAATCTAAGAactgaaaat
ttgtttttgaatgaatatGTTTATCACTGGGCGAAGGACATCAGAGATTT
GTGTCAcatttatgttttctttttttcatttagcGGCTGTTAACAAGATG
ATTAAAGAAATGATTCCAAATATACGAATTTCAAACGATGCACGCGAGCT
GGTACTCAATTGTTGCACAGGTAACAAGTTTTGAACAATATTTTAGGAAC
TATAGATAACTTGTAACGTAAAGCAAATAGTATTCTATCCTGTCCTCCCC
TTTTAATTTTCCGGCAAAATTGTTAAATGTATTGCTACTACGCAATATAT
TGCTGGTGAAAAATATTCAATACGTTTGAACACTAATAAATTACCAGCAC
TTTCCAATATTTGTCTGACAATATATAGCGTAGTGTAGAGAGGGAGAAGG
AGCATTTTGAAGATTCCATCAAGCCAAAAGCTTGATGGAATTGAGCTTTG
ATTCAATGCGTTTTTTGTGGTCCGAGATGGAATTTAAAATTCCAGGCAGT
TCCAGGAAGATTTTTTCTTCAGGCTCAACTAaataattcttttgtgtttt
gttttcagAATTCATTCATTTAATAGCATCAGAGTCGAACGAAATATGTA
ACAAACAGACCAAAAAGACCATATCACCCGAACATGTCATCTCAGCATTA
GATGTAAGTTTGGGTATCTTCATGGGAGGACTTGATTCTTGAAATGTTAT
TCTTCTTTATATCCTGCTATTAAAATGATTAGTTATTCTTTGTTTATAAG
CTTTTTAGGTCAGGTTTTTTGGTATTACGTTTCCCCCTAAAAAACCTTTT
CAATTAAACGACTGATTTGATGTGAAAAAAGGAATCTGTAAAGAAATTTC
ACGAATCCCTTCTTCCCAtctaaaataaaagttttcGACCGTTAGAGAGA
CTGATACCTTTTTGCTATGGAAATAGCCTCATTGTCACCtatgattttag
atttttctgcACAATCTGATTTCAAtgatgactttttcttttttgaagag
TTTAGGCTTCCAGGATTACGTGAAGGACGTGGAAAGTGTTTATaaacaat
tcaaggctcaaacACAGGTATGTGTCTTTCGTTCGATCGCTGACAAGATA
AACAAGATTTGTGGTGTTTACTTATGCCCTTTATGTTGTGATTTAAATAG
TTTTGAATAGATCTTGTGTTTAtggaaaatatggaaaaaattcCAGGATT
AACTTAACGTCTTGTCCAACCTCAAATTTGTACTAACTTCtctttattat
ttttcagactcgaaaaatgaataataaaatgaaaaatcaggTAACTAAAT
CTTTCATCATGTCattcgaatttctttttttaagccCAGCTGTTGGTGTC
GAAGTTAGGGGGTTAATTAAGTCCCCTCTCGCTTAAGTGAACCACACCCA
ATGGCTCACTAGTCTTGAAAAAAGACAATACCTCAAATCATCAGTAATTA
ATCGTCAACTTAGCTGCTGGGTTTAAGTTAAGGGTTCAGTTCACGGTTTA
GTTCACTTTGTCGATTATTTACCTTAGGGTGTGCCGGAGGAAGAGTTGTT
ACGACAACAGCAAGAATTATTCGCCAGAGCACGTGAACAGCAAGCCCAGG
TATGATTCATTCTTATTTACGTATGATAAACGTATAAAGTAATTGCTGAC
GGTTCTGTCCAAGTCAATGTGATATTTTTAAACTGAATCAAAAGAGGCAT
CCTTTCAAACTGAGACAAGGGGTGATTCTTAAATTGAGCTgagaaaaact
tcaaacaatcgTTTATTCGTCTGTCTACTCATCCATTTTCTTCGTACTTA
AATGGGCTTGGTAGCTTTTTTCAGCGATCTTTATTATTTGCAATTGTGAA
GTATCAGacacatagtgtcctcctgggttggttccccccactaaaaatca
aaatttttctccattcccccctcttttatttcccccaccatatttcaaaa
tttttcggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttcaaaattttt
cggttcccccctcttttttgaattcccccagctatttgaagattttgcgg
ttccccatatggttaacataaaaatgccttaaatcaagttttttttttgg
aaagcttgaaaaaatagcctttaaagtgctggaaaaatgaaattgtattg
aaaagttggtttatcccaaaagatttgctgattttattgcttaaacaggt
ttTGCAACAAGATCACCTTGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcccccccccccttta
taaaggggggggaggacactatgagaCAACGGTCTAAGAGAATCTTTCCT
ATATAAATTTCCAATTTAAAGCAACCCAGTGCTTTTCAATGTGACCTCAG
CTGATATGGCTCATATTATGACGGATAGGACATTAGCTTCCTGAGCAAAC
GTATATCAATATCATATAGTGATGATTTGATCTTTCGAATCGTTGATTAT
CCAATTGCATTGGAAATAATTTTCGACGAAAGTATAGCGTATTCAACTGT
TTGACGCTgacaaaaaagttttcattcaaaGCCAAAAGAGTCAACAAAAA
CACATTTCTAAGTTAAAACATATAGAGAAGAGAGTTTTACTGCGTTTCAA
GTAAAAGAACACGAATAGATGAAACCTTCTACCTTTTATCAATCAGGAGG
ACTGGCTACACATGCAACAACAGCAACAGCAAGCACAACAGGCCCAGCAA
CAACAAGCACAACAACAACGTTTAACAACAGGCGATCCTAATGCTCCACA
AACGCAACAAATCGTACAACCTGTCTCTACAACAACGCAACCGAAAATCG
AACAACAGCAACCTCAACCTCCATTAAATAGTGCACCTCCTTTGACCGAA
CCTCCTCCTATTAACTCTACTATACAAACGAACTTTCAACAACATTTAAC
ACACTCAGCAATTACGAATAATAGCGAGAACAATAGCATGGATTATGATA
GTACTACGACAAATGAAANATCAGCATTTACGAATAATAGCGAGAACAAT
AGCATGGATTATGATAGTACTACGACAAATGAAAATGCGTCAGATACGTA
GCACTTTCTAACTTCTGACTCTTCACTAACTTCTCCTCGTGAGGTTGGTT
CAACTCTACATACAAATATGGCTAGAGAGAAATGTGGAAACGATGGATTT
AGTATATTTAGCCAACGGTGGTATTTTATCAACATGGTGCCTGCAAAATT
ACTGTATCAGCAAAAAACGACTAGACGTTTCTAACGCCTCGAAATCACAG
GCTGTGTCAAACCCTCAAGCAATTAGCTTACTCCATATTGGTCGAAACAT
CGAGATATTTTACGAATCCTAGCTCTTTAACTGTCTCTAGCTATCGCCTT
CATAAAACGAAGAGGATGTTACTGAGTATTACCAAGAGCAATACTTCTTA
CTAACTTCATTAGAAATTTCAGAGATTTCTGAAATCCTCTTTACCTTATC
TCAAGGAACTACACACATGCATGTTATGAATATGTATTTAACAGGATAAG
ACATAATTTTATAAATCAAGCATTTTGTTCAAATGGTTTTATATTATACG
TTTTCCCCTTGTATTCTTCGATATTGTGCgtcaaaaaccaaaaaagattt
taaaaatacaaagtaTTTCATGCTTTtcaatttacatttttaaaaagaga
ttctttatttacaatgcaataAACATACGATAGTATAAGATGGAGTACAA
GACTAAAATGCTAGGTGAATAGAATTATAAAAACTAAGTAAAT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00027311TCONS_00027311Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00027311-proteinTCONS_00027311-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000616supercontigsc0000616:6719..16761 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
38.15	35.83	17.63	13.67	31.03	24.26	20.07	21.18	14.15	15.89	19.1	13.36	16.13	18.32	18.87	17.6	17.74	17.87	10.85	7.28	17.63	17.8	61.38	52.5	20.38	21.61	7.57	5.53	40.15	46.58