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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00027266 ID=TCONS_00027266|Name=TCONS_00027266|organism=Clytia hemisphaerica|type=transcript|length=1064bp
TTCTCTGTCAAAAAATAGGAACAGTAAACAATAAGAATAAAAATCTAGAA
TAATGCAAAAATACAATCAACCATGAACCTCTTCTGTCTCTTCAGAATGC
CTTTTCAATGTCTCTCTCAATACTTTTTTGTCGGAAtacttttttgcatt
tttctctTTGTAGTCTTCAACTACATCCCTTGCAAAGGAAAAACAGCGAA
CACGGATATACAACTCCAGAATAGATTGTAGAGTTACTTTTTCAGATTCA
TTGTCAACTGGAATTTCACAGGTGTCAGtaatttgtttgaaaatagAATT
GATATTAATGTTTTCCATTAATGCCTTTGTAAAGCGATCAATATTATTAA
GGCGTTTGTTATTGTGAGTGAATTGTCTAAAAAGTTTCTCTGTTATCATG
AAGATTTCCTCTGCCTGTTGGGTGACAGCCCACAGTCCACCTCTACTAAT
AGCATTTATCAATTTAGCATTTTTGATATCCTTTTCATCACCTTTCATTT
GCCAGAGTATTGAGAGGACCTCAGATATTTCAGCAATTGGTCCAGCGTGT
TTATACTTCACTCTATTATAAAGTGTGTGAACGGTATATCCTGCAATATA
CTGCAGACCACAAATTTCTCTCTCAGATATTGTAATTTCACTCAATTCAA
taccatctttgtttttcaTACCACGTCTCTTTACATCGCCAATAAGTTTT
TCTGCGAGATTCGTCAGTAATAAAGTGGAACAGTTGTTTGAGAGTTCACG
TGGACATATTGAGCTTGCATTAAAAACTATATCAACAAAATAAGTGTTGT
AAAACTTTTCTGCCTTgccttttttcaagaatttcatGCATGAACTATCA
ATCAGCATGTCATAGGCAATTTTTGAAAGATCAATGTGTTTCAATTCATC
GCGTAAGTTGGCAGGATAGCACTTGTCCTCTGCTAATTTATCTTTGGTTT
CTTGCATGAGTTTTTTCATGCATTCGAACGTGAATAAATTTTCCTCTGgt
acttcattttctttttgttcgATTAAATCCTCTTCTTTATCCAATTCAAT
TAATCCGGGGTGCT Run BLAST on NCBI protein sequence of TCONS_00027266-protein >TCONS_00027266-protein ID=TCONS_00027266-protein|Name=TCONS_00027266-protein|organism=Clytia hemisphaerica|type=polypeptide|length=331bp
HPGLIELDKEEDLIEQKENEVPEENLFTFECMKKLMQETKDKLAEDKCYP
ANLRDELKHIDLSKIAYDMLIDSSCMKFLKKGKAEKFYNTYFVDIVFNAS
SICPRELSNNCSTLLLTNLAEKLIGDVKRRGMKNKDGIELSEITISEREI
CGLQYIAGYTVHTLYNRVKYKHAGPIAEISEVLSILWQMKGDEKDIKNAK
LINAISRGGLWAVTQQAEEIFMITEKLFRQFTHNNKRLNNIDRFTKALME
NININSIFKQITDTCEIPVDNESEKVTLQSILELYIRVRCFSFARDVVED
YKEKNAKKYSDKKVLRETLKRHSEETEEVHG Run BLAST on NCBI transcript from alignment at sc0000612:80661..81724 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00027266 ID=TCONS_00027266|Name=TCONS_00027266|organism=Clytia hemisphaerica|type=transcript|length=1064bp|location=Sequence derived from alignment at sc0000612:80661..81724 (Clytia hemisphaerica)
AGCACCCCGGATTAATTGAATTGGATAAAGAAGAGGATTTAATcgaacaa
aaagaaaatgaagtacCAGAGGAAAATTTATTCACGTTCGAATGCATGAA
AAAACTCATGCAAGAAACCAAAGATAAATTAGCAGAGGACAAGTGCTATC
CTGCCAACTTACGCGATGAATTGAAACACATTGATCTTTCAAAAATTGCC
TATGACATGCTGATTGATAGTTCATGCatgaaattcttgaaaaaaggcAA
GGCAGAAAAGTTTTACAACACTTATTTTGTTGATATAGTTTTTAATGCAA
GCTCAATATGTCCACGTGAACTCTCAAACAACTGTTCCACTTTATTACTG
ACGAATCTCGCAGAAAAACTTATTGGCGATGTAAAGAGACGTGGTAtgaa
aaacaaagatggtaTTGAATTGAGTGAAATTACAATATCTGAGAGAGAAA
TTTGTGGTCTGCAGTATATTGCAGGATATACCGTTCACACACTTTATAAT
AGAGTGAAGTATAAACACGCTGGACCAATTGCTGAAATATCTGAGGTCCT
CTCAATACTCTGGCAAATGAAAGGTGATGAAAAGGATATCAAAAATGCTA
AATTGATAAATGCTATTAGTAGAGGTGGACTGTGGGCTGTCACCCAACAG
GCAGAGGAAATCTTCATGATAACAGAGAAACTTTTTAGACAATTCACTCA
CAATAACAAACGCCTTAATAATATTGATCGCTTTACAAAGGCATTAATGG
AAAACATTAATATCAATTctattttcaaacaaattaCTGACACCTGTGAA
ATTCCAGTTGACAATGAATCTGAAAAAGTAACTCTACAATCTATTCTGGA
GTTGTATATCCGTGTTCGCTGTTTTTCCTTTGCAAGGGATGTAGTTGAAG
ACTACAAagagaaaaatgcaaaaaagtaTTCCGACAAAAAAGTATTGAGA
GAGACATTGAAAAGGCATTCTGAAGAGACAGAAGAGGTTCATGGTTGATT
GTATTTTTGCATTATTCTAGATTTTTATTCTTATTGTTTACTGTTCCTAT
TTTTTGACAGAGAA Coding sequence (CDS) from alignment at sc0000612:80661..81724 >TCONS_00027266 ID=TCONS_00027266|Name=TCONS_00027266|organism=Clytia hemisphaerica|type=CDS|length=996bp|location=Sequence derived from alignment at sc0000612:80661..81724 (Clytia hemisphaerica)
CACCCCGGATTAATTGAATTGGATAAAGAAGAGGATTTAATcgaacaaaa
agaaaatgaagtacCAGAGGAAAATTTATTCACGTTCGAATGCATGAAAA
AACTCATGCAAGAAACCAAAGATAAATTAGCAGAGGACAAGTGCTATCCT
GCCAACTTACGCGATGAATTGAAACACATTGATCTTTCAAAAATTGCCTA
TGACATGCTGATTGATAGTTCATGCatgaaattcttgaaaaaaggcAAGG
CAGAAAAGTTTTACAACACTTATTTTGTTGATATAGTTTTTAATGCAAGC
TCAATATGTCCACGTGAACTCTCAAACAACTGTTCCACTTTATTACTGAC
GAATCTCGCAGAAAAACTTATTGGCGATGTAAAGAGACGTGGTAtgaaaa
acaaagatggtaTTGAATTGAGTGAAATTACAATATCTGAGAGAGAAATT
TGTGGTCTGCAGTATATTGCAGGATATACCGTTCACACACTTTATAATAG
AGTGAAGTATAAACACGCTGGACCAATTGCTGAAATATCTGAGGTCCTCT
CAATACTCTGGCAAATGAAAGGTGATGAAAAGGATATCAAAAATGCTAAA
TTGATAAATGCTATTAGTAGAGGTGGACTGTGGGCTGTCACCCAACAGGC
AGAGGAAATCTTCATGATAACAGAGAAACTTTTTAGACAATTCACTCACA
ATAACAAACGCCTTAATAATATTGATCGCTTTACAAAGGCATTAATGGAA
AACATTAATATCAATTctattttcaaacaaattaCTGACACCTGTGAAAT
TCCAGTTGACAATGAATCTGAAAAAGTAACTCTACAATCTATTCTGGAGT
TGTATATCCGTGTTCGCTGTTTTTCCTTTGCAAGGGATGTAGTTGAAGAC
TACAAagagaaaaatgcaaaaaagtaTTCCGACAAAAAAGTATTGAGAGA
GACATTGAAAAGGCATTCTGAAGAGACAGAAGAGGTTCATGGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00027266-exon-sc0000612-1491911889:80661..81724 | TCONS_00027266-exon-sc0000612-1491911889:80661..81724 | Clytia hemisphaerica | exon |
| TCONS_00027266-exon-sc0000612-1510915933:80661..81724 | TCONS_00027266-exon-sc0000612-1510915933:80661..81724 | Clytia hemisphaerica | exon |
| TCONS_00027266-exon-sc0000612-1575043694:80661..81724 | TCONS_00027266-exon-sc0000612-1575043694:80661..81724 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000612 | supercontig | sc0000612:80661..81724 . |
Blast
The following BLAST results are available for this feature:
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