TCONS_00027253 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027253
Unique NameTCONS_00027253
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length595

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027253 ID=TCONS_00027253|Name=TCONS_00027253|organism=Clytia hemisphaerica|type=transcript|length=595bp
TTTAGTTTCCAAGCAAATGAATGATAAAGAATCAAACAAATCTGGTGTGG
ACATGCAAAATTCTCCATTAGGATTCAATGGTGATTTATGTAGTGTCAAT
GACCCGGTAAATGAATCAAAATCCAATGCTATGACTCGTTTAAAGTTTCC
AGTTAATAATGGTGGTGCAAAAGTTGTTCAATACCGAGATTTGGAACAAA
GTACCTCAGTGATTGAATCAGCAAACTTTGATATACAAGAACGGACATTA
CCTAGAGCTAAACTTCAAATACAAGATATATCAGTGTTGCCGACAGACCA
TTCAAATATCAATATACATGAACCAATAATAGATGAAAGCATCGTACGAA
CACAAACATTAccaaaagatttattttctgGAAAAGAATTTACATGCTTG
CCGATAGACCTTCAAAATACGCctataaataaaaaagctacAATAGACTC
AAGGAGAACAGCTCGAGAATTAACTGTTTTGCAGCCTATATGTCTGCAAA
CTCCACCACCACGCTACAAACATTTGGTGCATTTATTTTTAACAGATGAA
CCTCCAACTTATTATGCTGCCACTGGAATAAAGGTGGCATCCGCG
Run BLAST on NCBI

protein sequence of TCONS_00027253-protein

>TCONS_00027253-protein ID=TCONS_00027253-protein|Name=TCONS_00027253-protein|organism=Clytia hemisphaerica|type=polypeptide|length=198bp
LVSKQMNDKESNKSGVDMQNSPLGFNGDLCSVNDPVNESKSNAMTRLKFP
VNNGGAKVVQYRDLEQSTSVIESANFDIQERTLPRAKLQIQDISVLPTDH
SNINIHEPIIDESIVRTQTLPKDLFSGKEFTCLPIDLQNTPINKKATIDS
RRTARELTVLQPICLQTPPPRYKHLVHLFLTDEPPTYYAATGIKVASA
Run BLAST on NCBI

transcript from alignment at sc0000611:104386..104980

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027253 ID=TCONS_00027253|Name=TCONS_00027253|organism=Clytia hemisphaerica|type=transcript|length=595bp|location=Sequence derived from alignment at sc0000611:104386..104980 (Clytia hemisphaerica)
CGCGGATGCCACCTTTATTCCAGTGGCAGCATAATAAGTTGGAGGTTCAT
CTGTTAAAAATAAATGCACCAAATGTTTGTAGCGTGGTGGTGGAGTTTGC
AGACATATAGGCTGCAAAACAGTTAATTCTCGAGCTGTTCTCCTTGAGTC
TATTgtagcttttttatttatagGCGTATTTTGAAGGTCTATCGGCAAGC
ATGTAAATTCTTTTCcagaaaataaatcttttggTAATGTTTGTGTTCGT
ACGATGCTTTCATCTATTATTGGTTCATGTATATTGATATTTGAATGGTC
TGTCGGCAACACTGATATATCTTGTATTTGAAGTTTAGCTCTAGGTAATG
TCCGTTCTTGTATATCAAAGTTTGCTGATTCAATCACTGAGGTACTTTGT
TCCAAATCTCGGTATTGAACAACTTTTGCACCACCATTATTAACTGGAAA
CTTTAAACGAGTCATAGCATTGGATTTTGATTCATTTACCGGGTCATTGA
CACTACATAAATCACCATTGAATCCTAATGGAGAATTTTGCATGTCCACA
CCAGATTTGTTTGATTCTTTATCATTCATTTGCTTGGAAACTAAA

Coding sequence (CDS) from alignment at sc0000611:104386..104980

>TCONS_00027253 ID=TCONS_00027253|Name=TCONS_00027253|organism=Clytia hemisphaerica|type=CDS|length=594bp|location=Sequence derived from alignment at sc0000611:104386..104980 (Clytia hemisphaerica)
CGCGGATGCCACCTTTATTCCAGTGGCAGCATAATAAGTTGGAGGTTCAT
CTGTTAAAAATAAATGCACCAAATGTTTGTAGCGTGGTGGTGGAGTTTGC
AGACATATAGGCTGCAAAACAGTTAATTCTCGAGCTGTTCTCCTTGAGTC
TATTgtagcttttttatttatagGCGTATTTTGAAGGTCTATCGGCAAGC
ATGTAAATTCTTTTCcagaaaataaatcttttggTAATGTTTGTGTTCGT
ACGATGCTTTCATCTATTATTGGTTCATGTATATTGATATTTGAATGGTC
TGTCGGCAACACTGATATATCTTGTATTTGAAGTTTAGCTCTAGGTAATG
TCCGTTCTTGTATATCAAAGTTTGCTGATTCAATCACTGAGGTACTTTGT
TCCAAATCTCGGTATTGAACAACTTTTGCACCACCATTATTAACTGGAAA
CTTTAAACGAGTCATAGCATTGGATTTTGATTCATTTACCGGGTCATTGA
CACTACATAAATCACCATTGAATCCTAATGGAGAATTTTGCATGTCCACA
CCAGATTTGTTTGATTCTTTATCATTCATTTGCTTGGAAACTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015332XLOC_015332Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027253-exon-sc0000611-1491911889:104386..104980TCONS_00027253-exon-sc0000611-1491911889:104386..104980Clytia hemisphaericaexon
TCONS_00027253-exon-sc0000611-1510915933:104386..104980TCONS_00027253-exon-sc0000611-1510915933:104386..104980Clytia hemisphaericaexon
TCONS_00027253-exon-sc0000611-1575043694:104386..104980TCONS_00027253-exon-sc0000611-1575043694:104386..104980Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027253-proteinTCONS_00027253-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000611supercontigsc0000611:104386..104980 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0919113	0	0.104067	0	0	0.0979449	0.708999	0	0.154904	0.0959366	0	0.122425	0.0611273	0.317406	0.574093	2.12831	0.551979	0.495041	0.0977037	0.40896	0.35546	0.130036	1.36999	1.53294	0.888129	0.616493	0.252057	0	2.55036	1.66298
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027253 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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