TCONS_00027173 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027173
Unique NameTCONS_00027173
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length575

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027173 ID=TCONS_00027173|Name=TCONS_00027173|organism=Clytia hemisphaerica|type=transcript|length=575bp
CTTCTTTATCCTACTCCCAAATAAGAGGACGAGGATAAATCGAGACCAAA
GTGATTTGCTGGAATTAGAGAGCTAACCAACCATGAGAAGTTTAACATTA
CTTTTGGTCAGTGCCATCATTGGCTTAACTTACGCAGGCTACTATCCACG
CCCGAACTTTTGTAAAGGTGTGAACTGCAAAAATGGTGGAAACTGCAGAA
GCCTTTATACCTCTTTCAAATGTGAATGCAAGAAAGGATTCACTGGAAAG
TTCTGTCAAACCAACATCAACGATTGCAAGAGAAATAGCTGCAAgaacgg
aggaaaatgcaaagATCTTGTCAATGGTTTCAAATGTCAATGCAAGAAAG
GATTCACTGGAAAGTTCTGTCAAACTAACGTCAATGATTGCAAGAGAAAT
AGCTGCAAgaacggaggaaaatgcaaagATCTTGTCAATGGTTTCAAATG
TGAATGCAAGAAAGGATTCAATGGAAAATTCTGTCAAACCAACATCAATG
ATTGCAAGAGAAATAGCTGCAAgaacggaggaaaatgcaaagATCTTGTC
AATGGTTTCAAATGTGAATGCAAGA
Run BLAST on NCBI

transcript from alignment at sc0000608:117953..119856-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027173 ID=TCONS_00027173|Name=TCONS_00027173|organism=Clytia hemisphaerica|type=transcript|length=1904bp|location=Sequence derived from alignment at sc0000608:117953..119856- (Clytia hemisphaerica)
CTTCTTTATCCTACTCCCAAATAAGAGGACGAGGATAAATCGAGACCAAA
GTGATTTGCTGGAATTAGAGGTAAGTTTTTTCGATACTTTTATCAATGAA
GCGTATTACTCTTGGCTACCCAATAGCCGGGAGGTTTGGAATAAGTGGGT
GGTTGGAAAAAATCTCAAAACTTGGAATAAGAATGTCCTGGGTGGAAAAT
TTTCGAAAAATTAATTAGCGGGTCCCCCGGCTATTAGATACCCGAAAGTA
GTCCATTTCCAAAAACATTACTTATCAAGTTGCAGACCTCTAAGAAGCCA
TACAATCACCTCGCAATTCAGCTTCTGTCATATTTGCTATACTGGAGTCG
TTCATAATCCATGTTATACAGTGTTATATTAGTGTTAAGTAATATTACAA
TAATGCAATACAATAATATTACAAATCTCACGGTCTGTTAGCACAAAAAT
ACTTCAGATGGTGATAAAAGCATGACATTTGGCACAGATGATCCTTAGAA
GGTCTAAAACTAAATTTTAAACAGCAGCACCAAATTTTGCAACCTGGCCA
CCTGCGGGATAATATCAGTTTGTATCTAGACTGGACACCTCCAGTGACTA
GGCGACTATAATATGTCCAGTCATTAGTTTTTGCTTTTATTGCTTACCAT
GTCTGAATTAGTCATCTAGCATTCTAGCCATGTCCCTGTCATTTGATAAA
ATTTTATTTTGTTATGTTTTAGAGCTAACCAACCATGAGAAGTTTAACAT
TACTTTTGGTCAGTGCCATCATTGGCTTAACTTACGCAGGTACGTTCGTT
TTTATGTGAAACATTCTTTAGAGAGGGAACCCTCTGAATTTGAAACGTTT
CTTTTCTTTTAATCTCTGGGTTTTCAAATATATAGTTAAGATTTAGTCTT
CTATTCATATATTCTGGGCAGGAGGTACTAGAGCTGCACGCTGGTAGATA
TGTGTCGCCCGACTTTCAACCTTCGGATCCAGCGGGACTAGAACGACGAA
AATGTTGTGAATTTTACGTATATTTCCATCTATCAAGGTGTAATTTTTTC
TATTCTTCCTACCCTTACAAAGACTTACAAGTTCGAAAAAGTCACCTTTC
AGGGCAGCACATACCTGTAATCTTCACTTACCTAGGTTCTCCCTCACGGA
TCGTATATGGGTGCATTCACCTATGCAACTTTGTATAGTGTGCATTATTC
AATGTTAACAAAATGTTATTTTTCCTTTTAATTTTTAGGCTACTATCCAC
GCCCGAACTTTTGTAAAGGTGTGAACTGCAAAAATGGTGGAAACTGCAGA
AGCCTTTATACCTCTTTCAAATGTGAATGCAAGAAAGGATTCACTGGAAA
GTTCTGTCAAACCAACATCAATGATTGCAAGAGAAATATCTGCAAGAACG
GAGGAAAATGCAAAGATCTTGTCAATGGTTTCAATTGTGAATGCAAGAAA
GGATTCACAGGAAAATTCTGTCAAACCAACATCAACGATTGCAAGAGAAA
TAGCTGTAAGAACGGAGGAAAATGCAAAGATCTTGTCAATGGTTTCAAAT
GTGAATGCAAAAAAGGATTTACTGGCAAATTCTGTCAAACCAACATCAAC
GATTGCAAGAGAAATAGCTGCAAGAACGGAGGAAAATGCAAAGATCTTGT
CAATGGTTTCAAATGTCAATGCAAGAAAGGATTCACTGGAAAGTTCTGTC
AAACTAACGTCAATGATTGCAAGAGAAATAGCTGCAAGAACGGAGGAAAA
TGCAAAGATCTTGTCAATGGTTTCAAATGTGAATGCAAGAAAGGATTCAA
TGGAAAATTCTGTCAAACCAACATCAATGATTGCAAGAGAAATAGCTGCA
AGAACGGAGGAAAATGCAAAGATCTTGTCAATGGTTTCAAATGTGAATGC
AAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015278XLOC_015278Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027173-exon-sc0000608-1575043694:119787..119856TCONS_00027173-exon-sc0000608-1575043694:119787..119856Clytia hemisphaericaexon
TCONS_00027173-exon-sc0000608-1575043694:119068..119134TCONS_00027173-exon-sc0000608-1575043694:119068..119134Clytia hemisphaericaexon
TCONS_00027173-exon-sc0000608-1575043694:118491..118618TCONS_00027173-exon-sc0000608-1575043694:118491..118618Clytia hemisphaericaexon
TCONS_00027173-exon-sc0000608-1575043694:117953..118262TCONS_00027173-exon-sc0000608-1575043694:117953..118262Clytia hemisphaericaexon
TCONS_00027173-exon-sc0000608-1510915933:119787..119856TCONS_00027173-exon-sc0000608-1510915933:119787..119856Clytia hemisphaericaexon
TCONS_00027173-exon-sc0000608-1510915933:119068..119134TCONS_00027173-exon-sc0000608-1510915933:119068..119134Clytia hemisphaericaexon
TCONS_00027173-exon-sc0000608-1510915933:118491..118618TCONS_00027173-exon-sc0000608-1510915933:118491..118618Clytia hemisphaericaexon
TCONS_00027173-exon-sc0000608-1510915933:117953..118262TCONS_00027173-exon-sc0000608-1510915933:117953..118262Clytia hemisphaericaexon
TCONS_00027173-exon-sc0000608-1491911889:119787..119856TCONS_00027173-exon-sc0000608-1491911889:119787..119856Clytia hemisphaericaexon
TCONS_00027173-exon-sc0000608-1491911889:119068..119134TCONS_00027173-exon-sc0000608-1491911889:119068..119134Clytia hemisphaericaexon
TCONS_00027173-exon-sc0000608-1491911889:118491..118618TCONS_00027173-exon-sc0000608-1491911889:118491..118618Clytia hemisphaericaexon
TCONS_00027173-exon-sc0000608-1491911889:117953..118262TCONS_00027173-exon-sc0000608-1491911889:117953..118262Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000608supercontigsc0000608:117953..119856 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0.418835	1.57591	0.347621	0.112731	0.756184	0	0	26.6693	1.73937	0	0	0	0	0	0.137141	0	0	0	0	0	0	0	0
Blast
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BLAST of TCONS_00027173 vs. Swiss-Prot (Human)
Match: FAT4 (Protocadherin Fat 4 OS=Homo sapiens GN=FAT4 PE=1 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 1.514e-37
Identity = 57/154 (37.01%), Postives = 87/154 (56.49%), Query Frame = 2 
Query:  176 CKNGGNC-RSLYTS---------------------FKCECKKGFTGKFCQTNINDCKRNSCKNGGKCKDLVNGFKCQCKKGFTGKFCQTNVNDCKRNSCKNGGKCKDLVNGFKCECKKGFNGKFCQTNINDCKRNSCKNGGKCKDLVNGFKCEC 571
            C+NGG+C R L  S                     F C+C  G+ G +C+ +I++C  + C +GG C +LV GF C C  GFTG+ C+ ++N+C ++ CKNG  C++    F C CK G+ GK C++++N C+ N C NGG C+  V+ + C C
Sbjct: 3811 CQNGGSCLRRLAVSSVLKSRESLPVIIVANEPLQPFLCKCLPGYAGSWCEIDIDECLPSPCHSGGTCHNLVGGFSCSCPDGFTGRACERDINECLQSPCKNGAICQNFPGSFNCVCKTGYTGKMCESSVNYCECNPCFNGGSCQSGVDSYYCHC 3964

HSP 2 Score: 122.865 bits (307), Expect = 2.320e-31
Identity = 51/123 (41.46%), Postives = 72/123 (58.54%), Query Frame = 2 
Query:  131 YAGYYPRPNF--CKGVNCKNGGNCRSLYTSFKCECKKGFTGKFCQTNINDCKRNSCKNGGKCKDLVNGFKCQCKKGFTGKFCQTNVNDCKRNSCKNGGKCKDLVNGFKCECKKGFNGKFCQTN 493
            YAG +   +   C    C +GG C +L   F C C  GFTG+ C+ +IN+C ++ CKNG  C++    F C CK G+TGK C+++VN C+ N C NGG C+  V+ + C C  G  GK C+ N
Sbjct: 3854 YAGSWCEIDIDECLPSPCHSGGTCHNLVGGFSCSCPDGFTGRACERDINECLQSPCKNGAICQNFPGSFNCVCKTGYTGKMCESSVNYCECNPCFNGGSCQSGVDSYYCHCPFGVFGKHCELN 3976

HSP 3 Score: 98.9821 bits (245), Expect = 3.017e-23
Identity = 39/124 (31.45%), Postives = 62/124 (50.00%), Query Frame = 2 
Query:  269 NDCKRNSCKNGGKC----------------------KDLVNGFKCQCKKGFTGKFCQTNVNDCKRNSCKNGGKCKDLVNGFKCECKKGFNGKFCQTNINDCKRNSCKNGGKCKDLVNGFKCECK 574
            + C    C+NGG C                       + +  F C+C  G+ G +C+ ++++C  + C +GG C +LV GF C C  GF G+ C+ +IN+C ++ CKNG  C++    F C CK
Sbjct: 3804 DSCVHGPCQNGGSCLRRLAVSSVLKSRESLPVIIVANEPLQPFLCKCLPGYAGSWCEIDIDECLPSPCHSGGTCHNLVGGFSCSCPDGFTGRACERDINECLQSPCKNGAICQNFPGSFNCVCK 3927
The following BLAST results are available for this feature:
BLAST of TCONS_00027173 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FAT41.514e-3737.01Protocadherin Fat 4 OS=Homo sapiens GN=FAT4 PE=1 S... [more]
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