TCONS_00027158 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027158
Unique NameTCONS_00027158
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length868

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027158 ID=TCONS_00027158|Name=TCONS_00027158|organism=Clytia hemisphaerica|type=transcript|length=868bp
AGGGTGTCAAGCAGGTTGTGATTTCTATATTGGTCCTGAGGATCTTTGTC
CTGATTTGGTTGGCAAATATGTATGGACTGAAACTGGTGAGAATCAGATG
TCCAAACTGAGTCAGATCTATGAATTGGAGACAGATTTCAACAGTAATTA
TTTCATCGGTGACTTGACCGAATGCAATGGTTTCATTAAAGATACTATCT
GTTCACAGGTGCTTCCACCATGCAATGCTAGAGGTACCAAACCCAAAAGA
ATCTGTCCCAAATCTTGTGTCAAACAGAAGAATTCAATTTGTTTTCAAGA
TATCACATTTGGTAACTCGCAATTCAGAGAATGGTTTGATAGCTTGGATT
GCGAGGAAAAGGTCAATGTTGATGACTGCTGGAATATGACCATACCAACT
GACAGACAACTACAACTTGCGTCTTGCAAGAAGAACTACCAAAAACTCAA
GGATCAAAATGAGGAGCCTTCCGTCTACGCAATCGACGTATCAGAAAGTA
TTTTATTAGAAGATTTGAGACGTCTCAAAGAATCATACGGGCGACGTCGT
AAGAAGCACGTCGAGTGCAAGAATCATCCTGTTGCTGAGCTTAAGGAACA
TCTTGAATCTTTGGACCAATCTAAACTAAGAGTTTTGAAGAATCTTCGAC
TTCAATCACTTGATAATGTAAAAACACACGGCTCGTGCGAAGATGTGAAC
AAAACGAGTGTAGTCTACCATATGGGTATGATCAACCGATACAAAGCTGA
TGGTCTGCTGGCATTCGATAATGTTAACGTTCTACTGAGATGGAATCGAG
ACCATCAGAACGGCTCGATTGAAgGCTCTACAACGGACGGTTGGAAAGAA
ACAATTTGAGAAAAGGAC
Run BLAST on NCBI

transcript from alignment at sc0000608:19098..26630+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027158 ID=TCONS_00027158|Name=TCONS_00027158|organism=Clytia hemisphaerica|type=transcript|length=7533bp|location=Sequence derived from alignment at sc0000608:19098..26630+ (Clytia hemisphaerica)
AGGGTGTCAAGCAGGTTGTGATTTCTATATTGGTCCTGAGGATCTTTGTC
CTGATTTGGTTGGCAAATATGTATGGACTGAAACTGGTGAGAATCAGATG
TCCAAACTGAGTCAGATCTATGAATTGGAGACAGATTTCAACAGTAATTA
TTTCATCGGTGACTTGACCGAATGCAATGGTTTCATTAAAGATACTATCT
GTTCACAGGTAACCATTCAATCATTGTTTGAAATTATACAcccattctca
cagacccggtaggactttttcagccaatggggtataaataacagactgaa
actcgatggggattgatattccaatattttttacggctggggatttaaat
tcaaGTCAGAAAGTAAGAGAAAATTCTATGTGGATGGTGaaaagcacaat
attttgcagcgaggattcgtatttgattattttcagcggggaaaagaatt
tccactggggacgatatttcggTCAATTTTACCAGTAGGAACGGATGAGA
GATTTATGTGGAAACTCGTCCTATATTGGGTTGCAAGTTTTCCCTCCTGT
CTTTGCGTGCTGTATCCCTGGAACCAGCTTGTTTCAATAACATTTTGGAA
ACTATCTTtgtaaaacgtttaaaaaggaTAAGTTCGATATTTTATATCGA
TTTTGTCtaggatttcaaaaatttgaatctTGCTAAATCTTAATATAGTT
TGAACTAATTCTCGCAGCTCTCGCCAATGAGAAACCCCGCCTAAAGTACT
TTCTTCTCAAGCTCAAATAAGCAAGAGTTAACTATACTCCTTTTttctac
ccagctggcacacaacgttgtttcaacgttcatctaacgttatatggaag
ttgtgaacgttagacaaacgttgaaaaaacgttgtgtgccagctgggtaa
gcCCTGGTTTGATCTTAGATGcctaataaaatcttttttgtttttacctC
AGGTGCTTCCACCATGCAATGCTAGAGGTACCAAACCCAAAAGAATCTGT
CCCAAATCTTGTGTCAAACAGAAGAATTCAATTTGTTTTCAAGATATCAC
ATTTGGTAACTCGCAATTCAGAGAATGGTTTGATAGCTTGGATTGCGAGG
AAAAGGTCAATGTTGATGACTGCTGGAATATGACCATACCAAGTAAGTAT
CCAGACCATGCCCAGTCCGTGTCTAGACCATAACCAGTCCGTGTCCAGAC
CATATCCAGTCCGTGTCTATACCATACCCAGTCCGTGTCTAGACCATAGC
CAGTCAGATCATACCAATCATGAGAGTAATCTCCAAATAATTAATAGGTA
AGATGCAATACAATGTGATTTCATTATAGCTGACAGACAACTACAACTTG
CGTCTTGCAAGAAGAACTACCAAAAACTCAAGGATCGTGAGTGTTTATTT
TCATTGGAtgttaggcgaaaataaaaaagtgtagtgtttccggaatgcgg
gtgaaggaaagaagctctcatgcggccgaccggaaaaaaaaatttttttg
ttgctatttctgataacttaagatcattgaaatataactttataGATAAC
TTtgatgtacaaacagtatgaagtaagccctgaatactaatgtataaCTA
CTAACGAAGTCTGCGGCCgggctgaatttttttttcacccggtcggcttc
cggaaacactacatttatAGGGGTTTTAACACACTCTGTAATATATTAGG
GATTTTATATGCATTTTTGAGGACGGCAGAGTGACTGAAACGATTAAAAC
AACCCACATTTTTTACTTACAAATTCAAGGATgataaaagtgctgattta
ccgtcgtccccGGTCATTCAGGATCTAGTAAAATCTCAGAAGTTAACGGT
GACCGTCTTTTTGATACCAGAGACAAAGTTTCGGTCAGTTCCGTATCCAA
CgtagaaaaaaaacacattcaCACCCAGCTGGCTcgcaacgttgttttaa
cgttcagctaacgttatatggacgttgtaaacgttagataaacgtcaaaa
caacgttgtgtgccagcaggGTAAAATCGGTACTGAACGAATGTTCTGGA
ATCTAACTCTacttgtttcaacgttcatttaacgttgtATCATATGGTTG
TTCATTTGTAGCAAAACTCTATATTTTTCGtttagtgaaatattttttca
tttagtgaaatatttttttcatttagtgaaatatttttcttttatttagt
gaaatattttttgcatttagtgaattttttttcatttagtgaaatatttt
ttcttttagtgaaatattttttgcatttagtgaaattttttttcatgtag
tgatcatttagtgaaatttttttttatttagtgaaatttttttttattca
gtgaaatttttttttatttagtgaaatttttttttgtttagtgaaatttt
ttaattagtgaaatttttttttattcagtggatatttttttgttttatgg
gacgctgttgcaaattttttttccgtagacgggcggaaatatctttaatg
gtcggaaatatcatagcgcaatggtcggaaatatcatttgatggtcggaa
atatctaaAACtctaaacatttgaaaatttaatgatcggaaatatcccgc
gcttttaaaaatgctttatcagcaaaaaaaatgtaaacaaaaatggtagc
aaaggtggtgtTATGTGGCCAACTTGTTGTGTGGCCAACATGTTGTGTGT
GCCAGACAAGCTTTTTAGAGAGAGAAagtggtattgacctttttattcTA
ACACGACTCTTCgttctttcttgtcttttttatatCATTTCCTCCTCTGG
CCCCCACTGTAAGGGtcattttttggccaaattttctctGCATGCACTGC
CAGCTGGATGCACTGTAAAGGTTCGATTTTGGAAGCCAAATTTTCCGCCG
AAcagtcgttttcagatcgagtgccccccccccagggGAAAGGTCTAGAA
TGGGAGGGTCCGGGTAGGGTTAGGACTAGCTTTAGGGTGATTTGAGAGCA
GTGGGGGCtagaggaggaaaggatataaaaaatacaagaaataaaCAAGA
GTCGTGTTTGAGtaaaaaggtcaataccactTTCTCTCCCTAAAAAGCTG
TCTACGTCTTGTGTAAAATACTGTGTAAAGAACTACGAAACAGAACAGTT
CTCAGATAGtgtcccaaaaacttaaaacaaaaaactactcttgtctggca
cacacaacaagttggccacaccacaccacctttgctaccatttttgttta
atttttttttgctgataaagcatttttaaaagcgcgggatatttccgacc
atcaaatgatatttccgaccatcaaaagatatttccgaccatcaaaagat
atttccaaccatcaaatgatatttccgaccattacgctatgatatttccg
accattaaattttcaaattttcagagtttgggatatttccgaccatcaaa
atatatttctgaccatcaaatgatatttccgaccattacgctatgatatt
tccgaccattaaattttcaaattttcagagtttgggatatttccgaccat
caaaatatatttctgaccatcaaatgatatttccgaccattgcgctatga
tatttctgaccattaaagatatttccgcccgtctacggaaaaaaaatttg
cgacgCCGTTCCGGGAAAAAATATGGCACGAGGTCAGTCTATAGTTTATA
TTTTTCTAGTCAGTATTTTGTCCAATCAAAAAATGGTAAGTATATATCCA
GGGATAGGGCCCATTCCGGGTGATTCGGAGGGTTCACTTCTCTTCTCTTG
CTCTATTACTATACACTACGTTAGTCACCTACTGTATCTACATCCTTGGT
CAAAATCAATCAACCTAACTCTCGACATGCCAGCAAGCTTACGTAACCCC
TTGGCTAGCCGACCTATGGGGTgttccgctgaggttcgaaaaataaACCC
TACGTGGACTcgtaaaattcatcaaaatttgcgaaaaagtgaccctgaac
gGGGCTGAAATCATTGAATTCTatattatgataattattttaagtaaaca
caaaagataAATATACCATTAAATTTTCCTGTTTCGTTACCCGtactgtt
tttttctatttatactttttatatatattgcactatatcaaaaatgaaaa
tggaacCCAAAAAGATGCACTAAAGAGACACTGGCCAGctaagacaaaaa
aaaagacCCTGAAAAGTGTGCCACACACACAAAAAACAGAAACTGAAAAG
ACTCGAAAGATAAAAGTAAAACCATAAGCTATAAAATGTTTTCTGGGGTG
AATATTTTCCCCCGTGATCCACGTAAACACCTTACGGTAGAACGTAAAAG
TGAAAAGCAAATCAGTGTTCTCAATTTATTCGTCACGATTGACTGAGGAA
CCTTTCGCTTGTCGGCCAACAACTCAGATAATCGTTGATAGAAACGAATA
CATTCCACGCCCATCGCACCGTTAGCCGCGAAAACGATTGGTCTGAACGT
TCCATTTTCAGATTGTCGAACGCGTTCTCCGTACATACGCTTTTTTCGTT
TTCGTTCGTCTTCAAGCAGTTCTCAACTTTGGAATTGATGTGTATGTTGC
TgaacaaaaaggttaaaaacccTTACGTCAAAGAATGCTCGCTGACCATC
GGGTTcatcgtaggcctgtacataagattttACTTACATGatttgctttg
gcaagttatgtacagccctacggtatcgcactttacggtcaaaataaacc
cgaGCTTAACCTCGCTATAAACTACTGAATGACCTCGTGCCATATCTTTT
CGAGAACGGCGTCCCATAAAACCaataaacaagaaaaaaatttcactaaa
taaaaaaaagttcactAAATAGCCAAAAGTTcactaaacaaaaaaattat
tgcactaaatgaaaaaaaattcactaaatgaaaaatatttcactaaatgc
aaaaaaaaaattcactaaatgcaaaaaaatatttcactaaatgcaaaaaa
atttcagtaaatgcaaaaaaatttcactaaatgcaaaaaaaattcactaa
atgaaaaaatatttcactaaataaaaaaatatttcactaaatgaaaaaaa
tatttcactaaatgaaagaatatttcactaaatcaaaaaaaatagagTTT
TGCTACAAATGAACAACCATAGTATCAGAGATTTTGGGCTGTATGGTCGT
TGTGaatgttagataaacgtcgaaaaaatgttgtgtgccagctgggtttc
cTGCTATGTAAGACTTACAGACAGCTGGAAAGGTCTGACTTTGATTTTAA
TGTTGCATTTTAGAAAATGAGGAGCCTTCCGTCTACGCAATCGACGTATC
AGAAAGTATTTTATTAGAAGATTTGAGACGTCTCAAAGAATCATACGGGC
GACGTCGTAAGAAGCACGTCGAGTGCAAGAATCATCCTGTTGCTGAGCTT
AAGGAACATCTTGAATCTTTGGACCAATCTAAACTAAGAGTTTTGAAGAA
TCTTCGACTTCAATCACTTGATAATGTGAGTACCTAGACATGACGTCAAA
ATACCGACAGCCTTTTCCATTATTGATTTCTAGCACTGACTTTTATATAC
CCTGGATTAAATTTCTCAATCCTGGccaaacaaaatctttgatcagagtt
tttgaaaagtggtactcTAATCCTGGGAATAAtaaatagcggtgtaaatg
catcgagagcgctcgatctactttccctcgaaaaccTTTGACGaggtagc
gccgttagacgttaatttttaacactgcaatggcttctttacgggtacca
attcaaaaaaaaaacttataacttggtccagggatatataaaggttagta
atttctaggctatattttcaaacttattggaacaattttgagcttttgaa
tTCTCATTCCAGCCTTTACGTCTAATGCTGAAACTCTATGTTCTAGAAGT
GAATTAGAAcaattaaagggataatcagatggttgcCAAGATTGACATAT
TTCACTACTAAACCTACAGGGAAAAACAGACTGTATTTTTCCTTACCCAA
AACTTTAATGGTGTTTCTTAATGTCCAACTCAAATTCTTGGTTTTTAAAA
GATCTCAAAAAGCAGTCGCCATGTTTTTTTATGGATCCTCGCATCGCGCT
TTCCAGTCTGCTATTGTAAACCGAGTTGGCTTACAAACTACAAACTCACA
AAACTCCGAGAGACATttgctttcactttcgtttattTGTTTATGCGGAC
CGTTGAGGAGCAAATTTTTAGTATTATCGCCGTTCAAACGGTTCCGAAGA
AAACCTTTTTGTCAGGGGGTTTAGAGTGTAAAGCCCTGCAAAGCATTTTg
taaattatttcttttattgggTAACACTTTTATACTTTATTTTACTTCCC
TTTTATCATGTTAACATAAAACCATGAAGATTCCTACTTTGAGTCAAAAA
TGTCCAATATACATTGTCGattctttttgagaaaattctacAAGACCCCA
TGAAATATATGTCACCTTCGACAAGTCAGAAGGACTTCTCaggaacttca
aaaaaaaaaacagtgggACCTTTCGCGGACctttcgaaattttaaagtgG
AATATCCTGACATTGACTTGTCAGTTGACAAAACTAATTGGGGAATCACG
TTTTCTCATGTATAAGAACAGGTACCCTTAgaatctcagaccatctgatt
atccctttaaaaatcatttgtgatGTTTAAACTTTTGCAGGAAATTCCCC
TTTTATCAAATATTAAGAAGTCCATAGTAGAAGACAAAGGGACCGCCGAT
AAAAAAGATCAGCATTAGAAAACAATAGTACCTTTAAATGTCGTTTCCAT
TGAGAAACTATACTCAGCATTCCTTGTTGCTTTCAGCTCTTTTTTTCCAT
CCCTAAAATATTCTCATTTGGTTATCCCAAGGGTCTTATTTAGGCCCAGA
GAACGGTCAATCTTTCTAGTTCAAGGCCCGTAGAAAATTACAATTCGTCA
TTCGAAAAGTTCGGTTCGCCGCCTAACATATCTACGCTAATCAAAACACT
GTGCTCGCTAAGAAATCGCCGGCATAGAATCTAGAAATCAccagagttaa
tttttcattcgccagcctaccaaaaacaaagcaaaatccCTGGTAACTGG
AACAGGGGTGTAGACAGAGATTCAAAACTGTGTCTCTTTTACTTAATAGG
TAAAAACACACGGCTCGTGCGAAGATGTGAACAAAACGAGTGTAGTCTAC
CATATGGGTATGATCAACCGATACAAAGCTGATGGTCTGCTGGCATTCGA
TAATGTTAACGTTCTACTGAGATGGAATCGAGACCATCAGAACGGCTCGA
TTGAAggtaaaaatatatttcttagTTCTTTCACATTGCTAAAACGATAG
ACAGCTTTTTTTCGTTTCTTTGTGCATTTCCTTTGCCAACACATAACCTG
AATTCAgatcaaaattatttctttccATCACGCTCTAAGGCTCTACAACG
GACGGTTGGAAAGAAACAATTTGAGAAAAGGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015267XLOC_015267Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027158-exon-sc0000608-1491911889:19098..19305TCONS_00027158-exon-sc0000608-1491911889:19098..19305Clytia hemisphaericaexon
TCONS_00027158-exon-sc0000608-1510915933:19098..19305TCONS_00027158-exon-sc0000608-1510915933:19098..19305Clytia hemisphaericaexon
TCONS_00027158-exon-sc0000608-1575043694:19098..19305TCONS_00027158-exon-sc0000608-1575043694:19098..19305Clytia hemisphaericaexon
TCONS_00027158-exon-sc0000608-1491911889:20050..20239TCONS_00027158-exon-sc0000608-1491911889:20050..20239Clytia hemisphaericaexon
TCONS_00027158-exon-sc0000608-1510915933:20050..20239TCONS_00027158-exon-sc0000608-1510915933:20050..20239Clytia hemisphaericaexon
TCONS_00027158-exon-sc0000608-1575043694:20050..20239TCONS_00027158-exon-sc0000608-1575043694:20050..20239Clytia hemisphaericaexon
TCONS_00027158-exon-sc0000608-1491911889:20427..20483TCONS_00027158-exon-sc0000608-1491911889:20427..20483Clytia hemisphaericaexon
TCONS_00027158-exon-sc0000608-1510915933:20427..20483TCONS_00027158-exon-sc0000608-1510915933:20427..20483Clytia hemisphaericaexon
TCONS_00027158-exon-sc0000608-1575043694:20427..20483TCONS_00027158-exon-sc0000608-1575043694:20427..20483Clytia hemisphaericaexon
TCONS_00027158-exon-sc0000608-1491911889:24411..24622TCONS_00027158-exon-sc0000608-1491911889:24411..24622Clytia hemisphaericaexon
TCONS_00027158-exon-sc0000608-1510915933:24411..24622TCONS_00027158-exon-sc0000608-1510915933:24411..24622Clytia hemisphaericaexon
TCONS_00027158-exon-sc0000608-1575043694:24411..24622TCONS_00027158-exon-sc0000608-1575043694:24411..24622Clytia hemisphaericaexon
TCONS_00027158-exon-sc0000608-1491911889:26297..26453TCONS_00027158-exon-sc0000608-1491911889:26297..26453Clytia hemisphaericaexon
TCONS_00027158-exon-sc0000608-1510915933:26297..26453TCONS_00027158-exon-sc0000608-1510915933:26297..26453Clytia hemisphaericaexon
TCONS_00027158-exon-sc0000608-1575043694:26297..26453TCONS_00027158-exon-sc0000608-1575043694:26297..26453Clytia hemisphaericaexon
TCONS_00027158-exon-sc0000608-1491911889:26587..26630TCONS_00027158-exon-sc0000608-1491911889:26587..26630Clytia hemisphaericaexon
TCONS_00027158-exon-sc0000608-1510915933:26587..26630TCONS_00027158-exon-sc0000608-1510915933:26587..26630Clytia hemisphaericaexon
TCONS_00027158-exon-sc0000608-1575043694:26587..26630TCONS_00027158-exon-sc0000608-1575043694:26587..26630Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000608supercontigsc0000608:19098..26630 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.0636404	0	0	0.0426549	0	0	0	0.032806	3.93313	5.60052	0	0	0.889113	0.368079	0	0.450956	1.59471	2.0571	0.0860943	0.0787821	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027158 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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