TCONS_00027154 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027154
Unique NameTCONS_00027154
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1939

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027154 ID=TCONS_00027154|Name=TCONS_00027154|organism=Clytia hemisphaerica|type=transcript|length=1939bp
AAATTCAACTGTAGTAGTGATTCTGCTATTAGTATTTCAATTTGTATttc
aatttgtaaaatattcttgttcattttctttttagatAAAATCAACGAGA
GAAAAACTTTTAAGAacataaatttaaatttctttacacgATGTCACCAA
TGGAAGCACAATCTTTTTATTTAATTCGATCCATCAGCCAGCGTTGCAGA
TGTGGTGTGTTAATGACAGACTGCAGTAATTGCTTGGACGAATATAATCG
TGAAAAAGAATGGGAAGTCAAGCGATGTATAGGGTGTAACGATGTGATCC
CTGACTGGGACATTGCACGACATCGAAAACTGAACGATAAATGCATGAAT
GGTGAATGCTCAAATACAATCAACTATGAATGTCCTACTGAAGATCAAGT
CCGGATCGAGATCGTAGCATACCAACAAGATAGAGAGAAACTTTATCCAG
CCAAAGTACTTTGTTTTAATATTCCTTGCTCGGCCGAAACTTTGATATCA
GACATTAAAAAGAGGATTGAGTATTCTCTTGGTATTCCTACAGAACATCA
ATTAATCGTGGAGCCTCACAAAAATGTTTATGAGATTCTAGAACCGTTGG
AAAGTGCATCATATTTTTCTTATCAACAAGAAGAAAGAACTGTTTGCTTT
CCTGAAACTTCTCATCTTGCACAAAAGGATATCAAAGTAATACATCTCCA
TTTAGCGGTGTTACAAGATGAATTTACGAGCACTAAAACTAAACAAATTT
ACGAGGTGATGGGTATCGAACAATACCAACAGCTTGAAATTAAAGCATTC
GGCTCACGTAAAACTTTACTACCACCAAGGTATTACCGTTCAGGAGATTT
AATACGAGCCCAAATACAACAAGTTTTCGGTATTCCGGCGCGCAATCAAG
TCTTAGTAGATAGCGAAGGGAAACGGCGCTTCGAGAATAATGAATACATT
CAAAAAGATGTCTTCGACGCTGATGATGTGGAAGAAGTAAATGAAACGCA
TCAGGATCAGGCGGACATTATCCAAGGTGGTATTTTATATCTGACGGTTG
TTTGTTACGGTGGCAAATTCACAAACGAAAAacaatttgatgaaatttgc
gAGGAGCACCATATTAAACCTATAAAGGATTTCAATACGTTTAAACTACA
GTTTTTGACCAAAGAAGAAGTGTTGACATCAGAACTATTCAAATATGTTA
GCCATGTTCGTAAGTATGTTCGTCAGAAATACAACATCCGAAACTCCGAC
CAGGTCATCTATTTTAAAGGTGAAAAATTGAGTGATCATCGTAAAACATT
CgatttatttttaaagtatAATTCACCGGGCCAAATGACTTTGAATTTGG
TTATCAATAAACATCCCTTTAACATTTGCATTAAACCTAAAGTAAATGTT
CAAGCTCTTGCCAACCGTTACGGCTCTTCGTCGTTCGTAATGGAAGTTAC
CGATAGTGACGATGTCAAAATTGTTAAAGACAGGGTGGCGGCGGCAGCTT
TTAACCGAGAAGAAGACGAGAATTATTGTTTTATTGATTTGTGGAGCTCC
AAAGATAACCGACAGTTGGAAGACGGCCACACTTTGGCAGAGTATAATCT
TTTAGATGGTGATAAAATCTTGATGAAGCAGCGTGTCGTGATACAGCTCA
CATTCGTGAATACTGAAGAGATAACGGTATTTTACGAAATCATTGAAAGT
GATCTGGCATGTAAGAATGTCAAAAAGttaattaaagaaattttgaagac
GCACAAATTGAAGAAGAGTCAGATTTTGGAGATGAAAGATATGAACAATG
ATGTTGTGTTGTCGTTAAGTAGTGATCAAAAGTTGTATGAATTTCGTCGA
TTGCATTTGCGAATCGATAAATCTCGATCGGATTGTAACGTCATGTGATG
AGAAAGTTAAATAAAACGTGGTATAGATAATACACACTG
Run BLAST on NCBI

protein sequence of TCONS_00027154-protein

>TCONS_00027154-protein ID=TCONS_00027154-protein|Name=TCONS_00027154-protein|organism=Clytia hemisphaerica|type=polypeptide|length=585bp
MSPMEAQSFYLIRSISQRCRCGVLMTDCSNCLDEYNREKEWEVKRCIGCN
DVIPDWDIARHRKLNDKCMNGECSNTINYECPTEDQVRIEIVAYQQDREK
LYPAKVLCFNIPCSAETLISDIKKRIEYSLGIPTEHQLIVEPHKNVYEIL
EPLESASYFSYQQEERTVCFPETSHLAQKDIKVIHLHLAVLQDEFTSTKT
KQIYEVMGIEQYQQLEIKAFGSRKTLLPPRYYRSGDLIRAQIQQVFGIPA
RNQVLVDSEGKRRFENNEYIQKDVFDADDVEEVNETHQDQADIIQGGILY
LTVVCYGGKFTNEKQFDEICEEHHIKPIKDFNTFKLQFLTKEEVLTSELF
KYVSHVRKYVRQKYNIRNSDQVIYFKGEKLSDHRKTFDLFLKYNSPGQMT
LNLVINKHPFNICIKPKVNVQALANRYGSSSFVMEVTDSDDVKIVKDRVA
AAAFNREEDENYCFIDLWSSKDNRQLEDGHTLAEYNLLDGDKILMKQRVV
IQLTFVNTEEITVFYEIIESDLACKNVKKLIKEILKTHKLKKSQILEMKD
MNNDVVLSLSSDQKLYEFRRLHLRIDKSRSDCNVM
Run BLAST on NCBI

transcript from alignment at sc0000607:158778..160716

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027154 ID=TCONS_00027154|Name=TCONS_00027154|organism=Clytia hemisphaerica|type=transcript|length=1939bp|location=Sequence derived from alignment at sc0000607:158778..160716 (Clytia hemisphaerica)
CAGTGTGTATTATCTATACCACGTTTTATTTAACTTTCTCATCACATGAC
GTTACAATCCGATCGAGATTTATCGATTCGCAAATGCAATCGACGAAATT
CATACAACTTTTGATCACTACTTAACGACAACACAACATCATTGTTCATA
TCTTTCATCTCCAAAATCTGACTCTTCTTCAATTTGTGCgtcttcaaaat
ttctttaattaaCTTTTTGACATTCTTACATGCCAGATCACTTTCAATGA
TTTCGTAAAATACCGTTATCTCTTCAGTATTCACGAATGTGAGCTGTATC
ACGACACGCTGCTTCATCAAGATTTTATCACCATCTAAAAGATTATACTC
TGCCAAAGTGTGGCCGTCTTCCAACTGTCGGTTATCTTTGGAGCTCCACA
AATCAATAAAACAATAATTCTCGTCTTCTTCTCGGTTAAAAGCTGCCGCC
GCCACCCTGTCTTTAACAATTTTGACATCGTCACTATCGGTAACTTCCAT
TACGAACGACGAAGAGCCGTAACGGTTGGCAAGAGCTTGAACATTTACTT
TAGGTTTAATGCAAATGTTAAAGGGATGTTTATTGATAACCAAATTCAAA
GTCATTTGGCCCGGTGAATTatactttaaaaataaatcGAATGTTTTACG
ATGATCACTCAATTTTTCACCTTTAAAATAGATGACCTGGTCGGAGTTTC
GGATGTTGTATTTCTGACGAACATACTTACGAACATGGCTAACATATTTG
AATAGTTCTGATGTCAACACTTCTTCTTTGGTCAAAAACTGTAGTTTAAA
CGTATTGAAATCCTTTATAGGTTTAATATGGTGCTCCTcgcaaatttcat
caaattgtTTTTCGTTTGTGAATTTGCCACCGTAACAAACAACCGTCAGA
TATAAAATACCACCTTGGATAATGTCCGCCTGATCCTGATGCGTTTCATT
TACTTCTTCCACATCATCAGCGTCGAAGACATCTTTTTGAATGTATTCAT
TATTCTCGAAGCGCCGTTTCCCTTCGCTATCTACTAAGACTTGATTGCGC
GCCGGAATACCGAAAACTTGTTGTATTTGGGCTCGTATTAAATCTCCTGA
ACGGTAATACCTTGGTGGTAGTAAAGTTTTACGTGAGCCGAATGCTTTAA
TTTCAAGCTGTTGGTATTGTTCGATACCCATCACCTCGTAAATTTGTTTA
GTTTTAGTGCTCGTAAATTCATCTTGTAACACCGCTAAATGGAGATGTAT
TACTTTGATATCCTTTTGTGCAAGATGAGAAGTTTCAGGAAAGCAAACAG
TTCTTTCTTCTTGTTGATAAGAAAAATATGATGCACTTTCCAACGGTTCT
AGAATCTCATAAACATTTTTGTGAGGCTCCACGATTAATTGATGTTCTGT
AGGAATACCAAGAGAATACTCAATCCTCTTTTTAATGTCTGATATCAAAG
TTTCGGCCGAGCAAGGAATATTAAAACAAAGTACTTTGGCTGGATAAAGT
TTCTCTCTATCTTGTTGGTATGCTACGATCTCGATCCGGACTTGATCTTC
AGTAGGACATTCATAGTTGATTGTATTTGAGCATTCACCATTCATGCATT
TATCGTTCAGTTTTCGATGTCGTGCAATGTCCCAGTCAGGGATCACATCG
TTACACCCTATACATCGCTTGACTTCCCATTCTTTTTCACGATTATATTC
GTCCAAGCAATTACTGCAGTCTGTCATTAACACACCACATCTGCAACGCT
GGCTGATGGATCGAATTAAATAAAAAGATTGTGCTTCCATTGGTGACATc
gtgtaaagaaatttaaatttatgtTCTTAAAAGTTTTTCTCTCGTTGATT
TTatctaaaaagaaaatgaacaagaatattttacaaattgaaATACAAAT
TGAAATACTAATAGCAGAATCACTACTACAGTTGAATTT

Coding sequence (CDS) from alignment at sc0000607:158778..160716

>TCONS_00027154 ID=TCONS_00027154|Name=TCONS_00027154|organism=Clytia hemisphaerica|type=CDS|length=1758bp|location=Sequence derived from alignment at sc0000607:158778..160716 (Clytia hemisphaerica)
TCACATGACGTTACAATCCGATCGAGATTTATCGATTCGCAAATGCAATC
GACGAAATTCATACAACTTTTGATCACTACTTAACGACAACACAACATCA
TTGTTCATATCTTTCATCTCCAAAATCTGACTCTTCTTCAATTTGTGCgt
cttcaaaatttctttaattaaCTTTTTGACATTCTTACATGCCAGATCAC
TTTCAATGATTTCGTAAAATACCGTTATCTCTTCAGTATTCACGAATGTG
AGCTGTATCACGACACGCTGCTTCATCAAGATTTTATCACCATCTAAAAG
ATTATACTCTGCCAAAGTGTGGCCGTCTTCCAACTGTCGGTTATCTTTGG
AGCTCCACAAATCAATAAAACAATAATTCTCGTCTTCTTCTCGGTTAAAA
GCTGCCGCCGCCACCCTGTCTTTAACAATTTTGACATCGTCACTATCGGT
AACTTCCATTACGAACGACGAAGAGCCGTAACGGTTGGCAAGAGCTTGAA
CATTTACTTTAGGTTTAATGCAAATGTTAAAGGGATGTTTATTGATAACC
AAATTCAAAGTCATTTGGCCCGGTGAATTatactttaaaaataaatcGAA
TGTTTTACGATGATCACTCAATTTTTCACCTTTAAAATAGATGACCTGGT
CGGAGTTTCGGATGTTGTATTTCTGACGAACATACTTACGAACATGGCTA
ACATATTTGAATAGTTCTGATGTCAACACTTCTTCTTTGGTCAAAAACTG
TAGTTTAAACGTATTGAAATCCTTTATAGGTTTAATATGGTGCTCCTcgc
aaatttcatcaaattgtTTTTCGTTTGTGAATTTGCCACCGTAACAAACA
ACCGTCAGATATAAAATACCACCTTGGATAATGTCCGCCTGATCCTGATG
CGTTTCATTTACTTCTTCCACATCATCAGCGTCGAAGACATCTTTTTGAA
TGTATTCATTATTCTCGAAGCGCCGTTTCCCTTCGCTATCTACTAAGACT
TGATTGCGCGCCGGAATACCGAAAACTTGTTGTATTTGGGCTCGTATTAA
ATCTCCTGAACGGTAATACCTTGGTGGTAGTAAAGTTTTACGTGAGCCGA
ATGCTTTAATTTCAAGCTGTTGGTATTGTTCGATACCCATCACCTCGTAA
ATTTGTTTAGTTTTAGTGCTCGTAAATTCATCTTGTAACACCGCTAAATG
GAGATGTATTACTTTGATATCCTTTTGTGCAAGATGAGAAGTTTCAGGAA
AGCAAACAGTTCTTTCTTCTTGTTGATAAGAAAAATATGATGCACTTTCC
AACGGTTCTAGAATCTCATAAACATTTTTGTGAGGCTCCACGATTAATTG
ATGTTCTGTAGGAATACCAAGAGAATACTCAATCCTCTTTTTAATGTCTG
ATATCAAAGTTTCGGCCGAGCAAGGAATATTAAAACAAAGTACTTTGGCT
GGATAAAGTTTCTCTCTATCTTGTTGGTATGCTACGATCTCGATCCGGAC
TTGATCTTCAGTAGGACATTCATAGTTGATTGTATTTGAGCATTCACCAT
TCATGCATTTATCGTTCAGTTTTCGATGTCGTGCAATGTCCCAGTCAGGG
ATCACATCGTTACACCCTATACATCGCTTGACTTCCCATTCTTTTTCACG
ATTATATTCGTCCAAGCAATTACTGCAGTCTGTCATTAACACACCACATC
TGCAACGCTGGCTGATGGATCGAATTAAATAAAAAGATTGTGCTTCCATT
GGTGACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015264XLOC_015264Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027154-proteinTCONS_00027154-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027154-exon-sc0000607-1491911889:158778..160716TCONS_00027154-exon-sc0000607-1491911889:158778..160716Clytia hemisphaericaexon
TCONS_00027154-exon-sc0000607-1510915933:158778..160716TCONS_00027154-exon-sc0000607-1510915933:158778..160716Clytia hemisphaericaexon
TCONS_00027154-exon-sc0000607-1575043694:158778..160716TCONS_00027154-exon-sc0000607-1575043694:158778..160716Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000607supercontigsc0000607:158778..160716 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.36269	1.12259	0.654871	0.495125	1.94269	1.53462	1.82017	1.21526	0.630798	0.846905	0.822991	0.512985	0.492674	0.622956	0.635739	1.24428	1.3791	1.07781	0.308511	0.421882	0.779609	0.659258	2.11139	1.92678	1.37041	1.38506	0.831482	0.786819	1.2425	1.30556
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000626Ubiquitin_dom
IPR029071Ubiquitin-rel_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00027154 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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