TCONS_00027076 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027076
Unique NameTCONS_00027076
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1294

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027076 ID=TCONS_00027076|Name=TCONS_00027076|organism=Clytia hemisphaerica|type=transcript|length=1294bp
ttcagtcAATTGACATTAATAAAAACTAAAAGATATAGATATAAAAATGG
CTGTCATTGAGTTTTGTTTTAACTCCACATTGACTCCAATATGGGATCAT
GGTATTTCAATGTGTTTTTACAAGACTGTTCAACCAATTGTGGTGTTCAT
CCTATCTCTTTTGGTCTTTTGCTATCATCAATACATTCGTTATAAATGCA
AGCAATCAAGAAAAAAGACAGTGAAAGATCCACAAAAGAGAGGTTTAATA
CAGGGTGCTGAGGATATTGAAGCAATCCCTGTGGTCGATATGGGAGAGAA
TGACCAAGATGCTCCAAACAAGAAAAGTTTTAAAGCTTTTGCTTTTCCAA
AATTACCAACACCATTCTTGTATGTGGTACAGTTGTTATTGCATGGCTCC
ATTGCAGTACTACCAGTCATTCATATCATTTCTACATTGATCATTGAAAA
AGACCACGTTGACGGCTCCCATATATTGGCtgctattttaaattttctag
cGTGGGTTGTTGGATTTAAAGCattgaaaaaggaaagaaaacattatttt
gttATCAAAGCTAAAAGACATTCAGTCCTGATGTTATTGTTTTGGACAGT
TGCACTTCTTTTCGAGTGTCTCATATTTTTCTCCTTGAACAAGGATGGAT
CATTTTTGAAGCATTACCAAGAAGATATAAAGCTGTTAAATTTGATCATA
TTTTCCATCAAGTTTGCACTACATACTTTAACGTTCCTTCTTGGGCTTCA
TGGGCCAGGATTACACAAATCAAAGTATGATAAGgtaaatGACGATTCAA
AATCCAAGGATAAGAAGGATCAATCATGGGTTactgatttttgggaaaaa
tgtcaaaaactttggcCCTTCGTTTGGCCGAAAGACAATTGGCTAAGGTT
GAGAGTATTACTTTGCGTTGGATTGCTCATTGCTGGACGTGttatcaatg
tttttgttccaTTGTATAATAAAAAGATTGTGAACTATTTGACTAATAAA
TCCAATAAAGAAGATCcttggaaaatgattttgatgtaCACATTGTTTAT
GTTTTTACAAGGAGGTGGAATAGGTTCCATGGGCTTACTTAACAACTTGC
GTTCATTTATCTGGATCAAAGTCCAACAATACACAAGTCGATCTGTGCAA
ACTGAACTGTTTGAGCATCTTCATGATTTATCACTACGGTGGCATCTCGG
CAGAAAGACTGGTGAAGTGATCCGCATGGTAGATAGGGGTTCAACTAGTA
TAGAAAGTTTGTTGAGcTACATACTGTTCCAAATAGCACCAACA
Run BLAST on NCBI

transcript from alignment at sc0000606:27157..30704+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027076 ID=TCONS_00027076|Name=TCONS_00027076|organism=Clytia hemisphaerica|type=transcript|length=3548bp|location=Sequence derived from alignment at sc0000606:27157..30704+ (Clytia hemisphaerica)
ttcagtcAATTGACATTAATAAAAACTAAAAGATATAGATATAAAAATGG
CTGTCATTGAGTTTTGTTTTAACTCCACATTGACTCCAATATGGGATCAT
GGTATTTCAATGTGTTTTTACAAGACTGTTCAACCAATTGTGGTGTTCAT
CCTATCTCTTTTGGTCTTTTGCTATCATCAATACATTCGTTATAAATGCA
AGCAATCAAGAAAAAAGACAGTGAAAGATCCACAAAAGAGAGGTTTAATA
CAGGGTGCTGAGGATATTGAAGCAATCCCTGTGGTCGATATGGGAGAGAA
TGACCAAGATGCTCCAAACAAGAAAAGTTTTAAAGCTTTTGCTTTTCCAA
AATTACCAACACCATTCTTGTATGTGGTACAGTTGTTATTGCATGGCTCC
ATTGCAGTACTACCAGTCATTCATATCATTTCTACATTGATCATTGAAAA
AGACCACGTTGACGGCTCCCATATATTGGCtgctattttaaattttctag
cGTGGGTTGTTGGATTTAAAGCattgaaaaaggaaagaaaacattatttt
gttATCAAAGCTAAAAGACATTCAGTCCTGATGTTATTGTTTTGGACAGT
TGCACTTCTTTTCGAGTGTCTCATATTTTTCTCCTTGAACAAGGATGGAT
CATTTTTGAAGCATTACCAAGAAGATATAAAGCTGTTAAATTTGATCATA
TTTTCCATCAAGTTTGCACTACATACTTTAACGTTCCTTCTTGGGCTTCA
TGGGCCAGGATTACACAAATCAAAGTATGATAAGGTAAGAAAATATTGCA
TGCCACTAGCTTGAATCCGTTTGCTTTTTCCAGAAGAGCTTTTTACATTT
CATAATTTAGGACGTTTTAGTTTACAGAGCTAGATTGTGATTCTCATTCA
TAGAAGCTATCTTTGAAACAGAAggtttttcaataatttttttttcaggt
aaatGACGATTCAAAATCCAAGGATAAGAAGGATCAATCATGGGTTactg
atttttgggaaaaatgtcaaaaactttggcCCTTCGTTTGGCCGAAAGAC
AAGTGAGATTTTTTAATTGGTTCTAATAATTTGTTTGTTGTTTCATAAgt
aattaaataataataatagcaATAATAGTTTTAGAACGTTTGTTGATAAT
TTCTTTTAGCCAATTAATCCCTGGAGTGTCaccttaaatattttctttca
ttgaattaGTTGGCTAAGGTTGAGAGTATTACTTTGCGTTGGATTGCTCA
TTGCTGGACGTGttatcaatgtttttgttccaTTGTATAATAAAAAGATT
GGTAAGCCGAAATATTTCAGTTCAATTATTAATTGATTTAAAAAGCTTAA
CCTTTTTAGATTCATGGTCCCTACTTTGTAACCATAGATATAATATTGAT
TTACACACTAGTTAGGCTAACTAATCACAGGTTTCCCATGGAAGTGTGTC
CGGTTTTGATTAGTTACCATGTTGTTTTCTAATTTACCTCAGACTttcaa
atgttttaattttataagTTTCTAATCGTGCTCTTGACAATTTGAAGAAT
TTGAAAGCCAGATGATCCTTTTATATGGGAAGCCAGATCCAAAATAAGTT
GCAAAATTTAGTGTGctgtaatttgaatttttgtagtTGCCTTGGTAGTT
GCCTATTTATCAAGTATTTCAAAGTAGTAGACTTAACCCTGTTTAATTAT
GTGTTATTCCGTTGTTTTAGTGAACTATTTGACTAATAAATCCAATAAAG
AAGATCcttggaaaatgattttgatgtaCACATTGTTTATGTTTTTACAA
GGAGGTGGAATAGGTATTTAAGCGATTCTCATTGGCTATATGCTTTAAAc
tctttttacactttttgatctaatttttttgaataggAAAAATTCATATT
TATTCATTACTTACAAACATCAACTTTTATTAGTGATTAAAAAGCTACCT
TTATCTGGGCTATATTTCTAATGATGAATATATCAATACAATATCCTATC
GATAATTGTTAAGCCAGATAGCTTGAAATTATGTCTTGGaatggatttta
tttttttgaattgagtCTAAACAGGGTCAACAATATGAATGAAATGAAGA
CATTTCAATAATAATAGCTTTTGAACGCAAAatgcaaattgaaaattttg
atcaaTGTCTCAGAGTGATATCCATCCTATCATATATTAGTCTTCTccat
tttgtcgttttttatttCACAGGTTCCATGGGCTTACTTAACAACTTGCG
TTCATTTATCTGGATCAAAGTCCAACAATACACAAGTCGATCTGTGCAAA
CTGAACTGTTTGAGCATCTTCATGATTTATCACTACGGTGGCATCTCGGC
AGAAAGACTGGTGAAGTGATCCGCATGGTAGATAGGGGTTCAACTAGTAT
AGAAAGTTTGTTGAGGTATAATTTTCTTTCTCCAAATTTTCTGTATTGCA
GAACCAGTCTGGTTGAAATAAAATACcaggtgcaccaaaaaaaagtatac
aggtttgttgagatattgtgagctttaGGATTTAAACtcttttgttcatt
cttttttaatcatatggatactctaacttgaattttgagctatatTATAC
ATTAGGTACGAAAAAGTAGTacgaaaattatttctaaaaaactttttttg
tcgaaatttcaaaaaatcatcaaaaacagcgagcaaacttttttcttgac
aCTTACtttctttacacataaaaataacaaaagattcaactgtgttcatc
aaaactcttTACGGAGTTtaaaaatatggtaaaacaagctattcccaatt
gcgataatatttttggaaaaactgaaaaaaatttttggaaatctccaaga
gaaGTTTTGATGTTATCTGCTATTTGagaaaacttttgcaaaaaatcgAT
CACCATTCCTTGACTAGTtgttcaaagaacttgggtcggCATAGATTTTA
CttgtgttggaaatgttcattgCGTGCAAATAAGATGAAGAAAcggttgg
caaaatataaatacgaaaaaaaagaaccaaaaaaacaataagattgtgtt
tttgtcattttgtcttatttattaTAGCTTGAttgctgtttttgatgatt
ttttgaaatttcgacatagaaaaaaagtcagttttttaaaaataactttc
gagctactttttcagatttaatgtataatagctcaaaattcaagttagag
catcctctataagatAAAAACAGAATAAACAAGAAATACAAACCCTGAAG
CTggcaatatctcgacaaacctgtatactttttttggtgcacccggtagt
gCAACCCGGTGCAACTGCCTATCAAATATCAAGTATAAATATAACTGACT
TGTGTCATTTTTTTCCTCATTTAGAATGCATTCGTCTTTTGTCGTTTTTA
TCATTCACGACTTTGATCAGCTTTGATAAACTTTTTAGATGTCTAGAGTT
TTGAAATAAAGGTTGATCAATCAACTTATGATTCATCATGAttacttgtt
tactttttttctttattcagcTACATACTGTTCCAAATAGCACCAACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015218XLOC_015218Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027076-exon-sc0000606-1491911889:27157..27940TCONS_00027076-exon-sc0000606-1491911889:27157..27940Clytia hemisphaericaexon
TCONS_00027076-exon-sc0000606-1510915933:27157..27940TCONS_00027076-exon-sc0000606-1510915933:27157..27940Clytia hemisphaericaexon
TCONS_00027076-exon-sc0000606-1575043694:27157..27940TCONS_00027076-exon-sc0000606-1575043694:27157..27940Clytia hemisphaericaexon
TCONS_00027076-exon-sc0000606-1491911889:28105..28208TCONS_00027076-exon-sc0000606-1491911889:28105..28208Clytia hemisphaericaexon
TCONS_00027076-exon-sc0000606-1510915933:28105..28208TCONS_00027076-exon-sc0000606-1510915933:28105..28208Clytia hemisphaericaexon
TCONS_00027076-exon-sc0000606-1575043694:28105..28208TCONS_00027076-exon-sc0000606-1575043694:28105..28208Clytia hemisphaericaexon
TCONS_00027076-exon-sc0000606-1491911889:28366..28457TCONS_00027076-exon-sc0000606-1491911889:28366..28457Clytia hemisphaericaexon
TCONS_00027076-exon-sc0000606-1510915933:28366..28457TCONS_00027076-exon-sc0000606-1510915933:28366..28457Clytia hemisphaericaexon
TCONS_00027076-exon-sc0000606-1575043694:28366..28457TCONS_00027076-exon-sc0000606-1575043694:28366..28457Clytia hemisphaericaexon
TCONS_00027076-exon-sc0000606-1491911889:28877..28969TCONS_00027076-exon-sc0000606-1491911889:28877..28969Clytia hemisphaericaexon
TCONS_00027076-exon-sc0000606-1510915933:28877..28969TCONS_00027076-exon-sc0000606-1510915933:28877..28969Clytia hemisphaericaexon
TCONS_00027076-exon-sc0000606-1575043694:28877..28969TCONS_00027076-exon-sc0000606-1575043694:28877..28969Clytia hemisphaericaexon
TCONS_00027076-exon-sc0000606-1491911889:29379..29571TCONS_00027076-exon-sc0000606-1491911889:29379..29571Clytia hemisphaericaexon
TCONS_00027076-exon-sc0000606-1510915933:29379..29571TCONS_00027076-exon-sc0000606-1510915933:29379..29571Clytia hemisphaericaexon
TCONS_00027076-exon-sc0000606-1575043694:29379..29571TCONS_00027076-exon-sc0000606-1575043694:29379..29571Clytia hemisphaericaexon
TCONS_00027076-exon-sc0000606-1491911889:30677..30704TCONS_00027076-exon-sc0000606-1491911889:30677..30704Clytia hemisphaericaexon
TCONS_00027076-exon-sc0000606-1510915933:30677..30704TCONS_00027076-exon-sc0000606-1510915933:30677..30704Clytia hemisphaericaexon
TCONS_00027076-exon-sc0000606-1575043694:30677..30704TCONS_00027076-exon-sc0000606-1575043694:30677..30704Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000606supercontigsc0000606:27157..30704 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.96919	3.57944	8.2594	11.5494	1.15633e-05	0.181729	0	1.75626e-05	0	0	0	0.393591	0	0	3.43212e-07	0	0	0	0	0	3.98602	5.39516	2.51776	3.71918	0	0	2.66393	1.48939	2.5173	0.992492
Blast
[Close]
BLAST of TCONS_00027076 vs. Swiss-Prot (Human)
Match: ABCB6 (ATP-binding cassette sub-family B member 6, mitochondrial OS=Homo sapiens GN=ABCB6 PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.253e-38
Identity = 107/291 (36.77%), Postives = 152/291 (52.23%), Query Frame = 2 
Query:  473 ILAAILNFLAWVVGFKALKKERKHYFVIKAK------RHSVLMLLFWTVALLFECLIFFSLNK------DGSFLKHYQEDIKLLNLIIFSIKFAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWVTDFWEKCQKLWPFVWPKDNWXXXXXXXXXXXXIA-GRVINVFVPLYNKKIVNYLTNKSNKEDPWK----MILMYTLFMFLQGGGIGSMGLLNNLRSFIWIKVQQYTSRSVQTELFEHLHDLSLRWHLGRKTGEVIRMVDRGSTSIESLLSYILFQIAPT 1294
            +LA++L  LA   G   L  ER       A       RHS  +LL WTVA   E L   S N            +  Q  + +L  ++    F L      L      L   + D+  + S+ +    QS   DF  K + L  ++WP+ +     V+L    L+   R +NV VP++ + IVN LT K+    PW      +  Y    FLQGGG GS G ++NLR+F+WI+VQQ+TSR V+  +F HLH+LSLRWHLGR+TGEV+R+ DRG++S+  LLSY++F + PT
Sbjct:  108 LLASVLESLAGACGLWLLVVERSQARQRLAMGIWIKFRHSPGLLLLWTVAFAAENLALVSWNSPQWWWARADLGQQVQFSLWVLRYVVSGGLFVLGLWAPGLRPQSYTLQVHEEDQDVERSQVRSAAQQSTWRDFGRKLRLLSGYLWPRGSPALQLVVLICLGLMGLERALNVLVPIFYRNIVNLLTEKA----PWNSLAWTVTSYVFLKFLQGGGTGSTGFVSNLRTFLWIRVQQFTSRRVELLIFSHLHELSLRWHLGRRTGEVLRIADRGTSSVTGLLSYLVFNVIPT 394
The following BLAST results are available for this feature:
BLAST of TCONS_00027076 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ABCB66.253e-3836.77ATP-binding cassette sub-family B member 6, mitoch... [more]
back to top