TCONS_00027017 (transcript) - C. hemisphaerica

Overview
NameTCONS_00027017
Unique NameTCONS_00027017
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2394

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00027017 ID=TCONS_00027017|Name=TCONS_00027017|organism=Clytia hemisphaerica|type=transcript|length=2394bp
aaaaattttaacaaatacTGAGATAGATATTAATGCTGAGTATAAATATT
TTATATTAAAGAAACAAATTATCAGCGTGCTTTATGATTTCCAGGATAAA
TTAAACATCAATCAATCATTACCTGGTTCAAATAACATCCAATCAACATC
CAATCAGTGTCCATCTGGTGTTCATTTTGATGTTAAGAAAACCCCTGTAG
TACAGACCCATCAATTAATTTCAACAAGTTTTCACAACAGGCAAAATAAT
CGAAATATTGAGACGGAAAAAAAAGAATCTTAAAATTacttggaaaaaga
aaatcaaagatggcaaACATGTTTCTTTATCTTGTTCTTATCAACATTTT
TGTTACTGTTTCGCTGGCTGTTCCGCAAAATGGAGAAAGTCGAGTAATTA
GAGATATTTTGCAGAATTATTCCGTGGACGCACGACCTGTTTCAAATGAT
AGTGATCCTGTTAGATTGAAGATTGGATTGGAATTAAACCAGGTTATTGA
TATCATTGAGAAAAGTGAGCGGATCGATGCTTTCTTCTTTATAAGACAGT
TTTGGACGGACAACCAATTAGTATGGGATGCAAAAGATTACAACAATGTT
CATCATATACACCTATCGCCTTCTAAAGTGTGGAAACCTGATATTGTCCT
CTACAATAACATTGAAAATGATAAGAAATTCGGTGGGAGTCTAGATCAGT
TGAACAATCGAGTCATTGTCCAATCAAACGGTGAAGTCGCCTGGTTAACA
CCTGCTCTTCTCATTGCTAAATGTCCAATGAACATCAAATACTTTCCATT
CGATGAACAAGAATGTACATTCGAATTTGGGAGCTGGACGTACGATGGAT
CTCAATTGGATGTTGATGTAAGAAGCACTGAAATCAACTTGAAATCATAT
ACAGCAAATTCAGAATGGAAGTTAGAATCAGCAACCATGAAGCAAATTAA
CATGACGTACACGTGTTGTCCTAATACCCATTTCCCAATCATTCATGCTA
CAGTGAAATTACACCGTAAACCATTGTATTACTTACTGAATATGATCTTC
CCAATGGTTTTGATCAGTTTAATGACCACGTTGACCTTCTTCTTACCAGC
TGAATCAGGTGAAAGAGTTGGGTTAGCAATCACTTTGTTCCTTTCAATGA
CTGTCTTCATGCTCATCGTTGATTCATTGATGCCGGAAACCTCTGATACT
GTTCCTATAGTAACCATTTTCTTTGGTGCTGCCATGTTAGAAATGATGGT
TATGATCGTAGCAACATGCGTCATTTTGAAAATGCATTCTGCAGTTCATC
CCTTACCGAAATGGGTGCGAGGACTTTTGTACGAGAATTTATCGTACAAA
CTCGGTATTCGTCAAAAAACCAAAGTCCTACCAAGCGACgaggaagaaaa
aaagaaagatagcATGACGTCATTCTCAAAAGAAAACAATGGCTATTTTC
ACGTGCCCGAAAATAATCTACAACGTATTAAACTGATGAGAGATCAAAAC
CAAAATGAAGCAGCTCTAAGCGCTATGAATGGCGCCAACACCGCCCTGAC
ACATCGTAATTCTCAAACACAAATGTTCAGTAATGaaatgatgaagaaaa
tggATATGATAGTAGAACGGCTTGAGAATGATGCTGACGATGAGAAGATC
AAACGTGAATGGAAGATCTGTGCTTACACATTGGATCGTCTGTTACTGGT
CACATTTGTAATCATATTTATCATCACAGTATTGGCTTGTTTCGTCACTG
CTTCATTTCATGGCGAAACTGAATAAGACTAATATAGTAgactttcaata
aactttttacggagcgatggccaagtggtcaaaggcggcAGCGTCTTAAA
CCAGGAATTCGCGGTTCGAATCCAGGCCAATGtcccgttcagttcataga
tagccaagccggctggccgtggaccccgtggaaacaatcaaaagacTGCC
TGAAAGAAACTTCCTGTTTCGATTAGAGAGTTCTGCAATCGGAAGGTGGA
ATTTACAATCATCTTTAAGATCTGCTTTCAATTGTGCAAAGCGATTTTGA
AGTTTATCGAAGAATCACACAGGAGAAAGCCAGTTCAATGCATACAGATT
GCCAAGGTCGAAGAAATTAAACTTTAAAATACAACTTAATAATCTTGACA
AAGAAATGAAAACCGATAAAACAGAGggttaaaaaaagaaagttgaCATA
ACTTTGTAGATCTGGAATCTCAGGCTATTACTGATGAGTATGGTGACCAT
TTGGAGGTgtaaaaaagggtaaaaaactGAAGGTTCAAATAATGAAAGAC
TAGTATAAATTTGAGtgtaatattttgtaaatttgatttttcataaaaat
tacgATCATAAAGTATATAATATGAGacgtaaaatacaaaaatc
Run BLAST on NCBI

protein sequence of TCONS_00027017-protein

>TCONS_00027017-protein ID=TCONS_00027017-protein|Name=TCONS_00027017-protein|organism=Clytia hemisphaerica|type=polypeptide|length=488bp
MANMFLYLVLINIFVTVSLAVPQNGESRVIRDILQNYSVDARPVSNDSDP
VRLKIGLELNQVIDIIEKSERIDAFFFIRQFWTDNQLVWDAKDYNNVHHI
HLSPSKVWKPDIVLYNNIENDKKFGGSLDQLNNRVIVQSNGEVAWLTPAL
LIAKCPMNIKYFPFDEQECTFEFGSWTYDGSQLDVDVRSTEINLKSYTAN
SEWKLESATMKQINMTYTCCPNTHFPIIHATVKLHRKPLYYLLNMIFPMV
LISLMTTLTFFLPAESGERVGLAITLFLSMTVFMLIVDSLMPETSDTVPI
VTIFFGAAMLEMMVMIVATCVILKMHSAVHPLPKWVRGLLYENLSYKLGI
RQKTKVLPSDEEEKKKDSMTSFSKENNGYFHVPENNLQRIKLMRDQNQNE
AALSAMNGANTALTHRNSQTQMFSNEMMKKMDMIVERLENDADDEKIKRE
WKICAYTLDRLLLVTFVIIFIITVLACFVTASFHGETE
Run BLAST on NCBI

transcript from alignment at sc0000600:55241..61325-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00027017 ID=TCONS_00027017|Name=TCONS_00027017|organism=Clytia hemisphaerica|type=transcript|length=6085bp|location=Sequence derived from alignment at sc0000600:55241..61325- (Clytia hemisphaerica)
AAAAATTTTAACAAATACTGAGATAGATATTAATGCTGAGTATAAATATT
TTATATTAAAGAAACAAATTATCAGCGTGCTTTATGATTTCCAGGATAAA
TTAAACATCAATCAATCATTACCTGGTTCAAATAACATCCAATCAACATC
CAATCAGTGTCCATCTGGTGTTCATTTTGATGTTAAGAAAACCCCTGTAG
TACAGACCCATCAATTAATTTCAACAAGTTTTCACAACAGGCAAAATAAT
CGAAATATTGAGACGGAAAAAAAAGAATCTTAAAATTACTTGGAAAAAGA
AAATCAAAGATGGCAAACATGTTTCTTTATCTTGTTCTTATCAACATTTT
TGTTACTGTTTCGCTGGCTGTTCCGCAAAATGGAGAAAGTCGAGTAATTA
GAGATATTTTGCAGAATTATTCCGTGGACGCACGACCTGTTTCAAATGAT
AGTGATCCTGTTAGATTGAAGATTGGATTGGAATTAAACCAGGTTATTGA
TATCGTAAGTAAAATATTTAGATTTTGAGGGGGTTGAGAATTAAACCTTT
GCAATGGAGTGTTCCACGAGGTTTAGGACGATTGGGCACCAGCTTATCCC
CGTCCCCAGGAGANCAATTTTGAGGGGGTTGAGAATTAAACCTTTGCAAT
GGAGTGTTCCACGAGGTTTAGGACGATTGGGCACCAGCTTATCCCCGTCC
CCAGGAGAGGCATTCAGGCGGAATGGGAAACGGGGACGAAACGCTCGTCA
GGGTCCCATTTTTACGCTCTAAAGATATCTGACAGGTTCCCAAATTTTTC
TAATTTCCAAGATGTGTATTTTGGACAATTTTCAGGGTGGAAATTAGAAA
ATTTTTCAAAATTCCGTCTACATCTCGTCATTAGCGAGAAATTAGTGAAA
AATCTGAAAAAATTGCCTAGGGAACAAACTTGCTACGATTTTTCTGTCTC
AAATCAAACGTTATAAACTCTGTATATAACCTGTATACCGTATCATTTAT
TCAATTTGTAGATTGAGAAAAGTGAGCGGATCGATGCTTTCTTCTTTATA
AGACAGTTTTGGACGGACAACCAATTAGTATGGGATGCAAAAGATTACAA
CAATGTTCATCATATACACCTATCGCCTTCTAAAGTGTGGAAACCTGATA
TTGTCCTCTACAATAAGTAAGCTATTGTATATTATGGGGACAAAAGTTGG
AGCTTTCACAAACTTTCATTTGATTTAGTTGGTCCGGGGCGGGGGGGTAC
TACCCTTGCCGACCGACGAAGGTGCTCCACTGAGGCTAAAAAAATAGACC
CTACGTGGGACTGGCTTTTTGAAAAAATTTGCCAAAGTTTGAGGAAAAAG
TGACCCTGAATGGGTCTTAAATTACAAAATCTTCGAAAAAAGACACCCTA
CGAGGGACTAATTTTTCTATTATGATGATTTTGCGACTCTACCTGGGACT
CGTGGAGGTGAAAAAAGGTTCCCTGACCAGCGGCACATCCCCGTAACTCA
TTTTGCTCTAGTACCCCCCTCCACCTGGAGTTGGTCGTTAACATGTAATG
AAATAATTTTGTTACTTTTCCTAAAGAACGCGTCAGCCCTATTACTTCAA
ATGACCAATTAGTGAAGTAACTTATAAAAACTGCAAGTGGTATAGGGGCA
CGAGTTACTATGAATGTCAGCTTCCTGGCAAGTTTGTGTAGTCTAACCAT
ACAAGTATCATTTTTTTTTTAATTTCATACACCCTTGTGGGCCTACTGGA
AAATTTGGCAAATATTTGGTCCCCGGTGGGAAAATACCCTACAATTTCAG
CCCCACTAGGAAATTCATTTTGATTTTATCTCCATTCAATATTCAATGAA
AGCATTCCGAAACCATGTCCCCAATAGATATTTTAAGTTGGAAAAAATAG
AGTAGAAGAATAATTCATTTCCCAATAGTAAACGAGAGAACTATCAAAAT
AATATTTTTGTTTAATCCATCACACATCTCAATCACCGAAATATCTTAAT
TTCTTCATTATTATTACTTAATAGCATTGAAAATGATAAGAAATTCGGTG
GGAGTCTAGATCAGTTGAACAATCGAGTCATTGTCCAATCAAACGGTGAA
GTCGCCTGGTTAACACCTGCTCTTCTCATTGCTAAATGTCCAATGAACAT
CAAATACTTTCCATTCGATGAACAAGAATGTACATTCGAATTTGGGAGCT
GGACGTACGATGGATCTCAATTGGATGTTGATGTAAGAAGCACTGAAATC
AACTTGAGTAAGGAAATACTTCTTACATAAAGATTAAAGAAACGGTGTAT
TTCTTCTCAATACTTTAGGTTTTTTGCTTACGCATTCATCAGTTGATTAG
AAAAAATCGTACATATATTTGTGAGGCCTGGTAAACCCGAATTATGAACT
TGGTTGTGTGAAAAATTAACACGGCCATTTTAAGAGCACCTTTAAAAAAC
CAAGTTATTAAACTCGAAAAATTAATGTGCACCTAAAATAACGAGTTACC
ATAAAACTCGAAAATTTAAGGTTCACCAAATATGACAGGAGTAAATTTTA
ACTCGGAAAATTAATATGCACCTCAAAAAACCGAGTGAGTACGTCATAAC
TCAGGTTTTTCATAACTCGGCACTAGAAAGACCTCCAGAAACGGAAAATT
TTCATAAACTACTCTCGACTCGTTACAGTAGTAAAAAACTGGTTTCATGA
GTCGACATTTTTTAGATTTTGAATTAAAATTTATTCCTTGGAATCTTCAT
TAAGCTTAAATTTAAGCTACAAAATATTCCAGGCTGCCCCAGCTGACACA
CAACGTTTTTTCAACGTTAATCTGGTGTCCAAAACGTCAAAATAATGCTA
GAAGAACGTTGAACCAACGTTGTGTGCCAGCCGCCAAGGGTAGACATAGA
AGAAAAAATCAAATGTAACGAAAATCTAGATCCCAACTGCTTACGATTCA
AGGTGCAAGAAGTAACCCTGATTTCTTTTTACAGAATCATATACAGCAAA
TTCAGAATGGAAGTTAGAATCAGCAACCATGAAGCAAATTAACATGACGT
ACACGTGTTGTCCTAATACCCATTTCCCAATCATTCATGCTACAGTGAAA
TTACACCGTAAACCATTGTATTACTTACTGAATATGATCTTCCCAATGGT
TTTGATCAGTTTAATGACCACGTTGACCTTCTTCTTACCAGCTGAATCAG
GTATGTTTTACTTTCTTTGAATATCTTATTACAGATACTAACAAAAACAC
CGGCTGAAATTTTAATCTCTACTGAGGGGTGTTGGGTGAGACCGATGCTT
ATAGTTCGAATTACAAAAAGGCTGTTGTAAGGAGAGCTATTAGGGAGTGG
TCAGAAAGTATCTACTAGGGGGGGGGTGGAGGATTCTAGGGGGGGGGNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNTTTTTTTCCAGGCTAGGGGAGGGGGTGCGAAAGT
ATTTTGGGATTTTTCAAAATATCCTCCACTCCCCCCTAGTAGATACTTTC
TGACCACTCCCTTAGGAGACTCGTTTATAATAGTTGGTTTTAGCTGAAGA
GGCAAGAAGACTTTCTTATCAGGAGCATTTGGGGTTTGGAAGTTTTACTG
TGTAACACATGAATTAATACCAACCATATTTTCGGATTTCCCTTTTTAGG
TGAAAGAGTTGGGTTAGCAATCACTTTGTTCCTTTCAATGACTGTCTTCA
TGCTCATCGTTGATTCATTGATGCCGGAAACCTCTGATACTGTTCCTATA
GTAACCATTTTCTTTGGTGCTGCCATGTTAGAAATGATGGTTATGATCGT
AGCAACATGCGTCATTTTGAAAATGCATTCTGCAGTTCATCCCTTACCGA
AATGGGTGCGAGGACTTTTGTACGAGAATTTATCGTACAAACTCGGTATT
CGTCAAAAAACCAAAGTCCTACCAAGCGACGAGGAAGAAAAAAAGAAAGA
TAGCATGACGTCATTCTCAAAAGAAAACAATGGCTATTTTCACGTGCCCG
AAAATAATCTACAACGTATTAAACTGATGAGAGATCAAAACCAAAATGAA
GCAGCTCTAAGCGCTATGAATGGCGCCAACACCGCCCTGACACATCGTAA
TTCTCAAACACAAATGTTCAGTAATGAAATGATGAAGAAAATGGATATGA
TAGTAGAACGGCTTGAGAATGATGCTGACGATGAGAAGATCAAACGTGAA
TGGAAGATCTGTGCTTACACATTGGATCGTCTGTTACTGGTCACATTTGT
AATCATATTTATCATCACAGTATTGGCTTGTTTCGTCACTGCTTCATTTC
ATGGCGAAACTGAATAAGACTAATATAGTAGACTTTCAATAAACTTTTTA
CGGAGCGATGGCCAAGTGGTCAAAGGCGGCAGCGTCTTAAACCAGGAATT
CGCGGTTCGAATCCAGGCCAATGTCCCGTTCAGTTCATAGATAGCCAAGC
CGGCTGGCCGTGGACCCCGTGGAAACAATCAAAAGACTGCCTGAAAGAAA
CTTCCTGTTTCGATTAGAGAGTTCTGCAATCGGAAGGTGGAATTTACAAT
CATCTTTAAGATCTGCTTTCAATTGTGCAAAGCGATTTTGAAGTTTATCG
AAGAATCACACAGGAGAAAGCCAGTTCAATGCATACAGATTGCCAAGGTC
GAAGAAATTAAACTTTAAAATACAACTTAATAATCTTGACAAAGAAATGA
AAACCGATAAAACAGAGGGTTAAAAAAAGAAAGTTGACATAACTTTGTAG
ATCTGGAATCTCAGGCTATTACTGATGAGTATGGTGACCATTTGGAGGTG
TAAAAAAGGGTAAAAAACTGAAGGTTCAAATAATGAAAGACTAGTATAAA
TTTGAGTGTAATATTTTGTAAATTTGATTTTTCATAAAAATTACGATCAT
AAAGTATATAATATGAGACGTAAAATACAAAAATC

Coding sequence (CDS) from alignment at sc0000600:55241..61325-

>TCONS_00027017 ID=TCONS_00027017|Name=TCONS_00027017|organism=Clytia hemisphaerica|type=CDS|length=7335bp|location=Sequence derived from alignment at sc0000600:55241..61325- (Clytia hemisphaerica)
GTGAAAGAGTTGGGTTAGCAATCACTTTGTTCCTTTCAATGACTGTCTTC
ATGCTCATCGTTGATTCATTGATGCCGGAAACCTCTGATACTGTTCCTAT
AGTAACCATTTTCTTTGGTGCTGCCATGTTAGAAATGATGGTTATGATCG
TAGCAACATGCGTCATTTTGAAAATGCATTCTGCAGTTCATCCCTTACCG
AAATGGGTGCGAGGACTTTTGTACGAGAATTTATCGTACAAACTCGGTAT
TCGTCAAAAAACCAAAGTCCTACCAAGCGACGAGGAAGAAAAAAAGAAAG
ATAGCATGACGTCATTCTCAAAAGAAAACAATGGCTATTTTCACGTGCCC
GAAAATAATCTACAACGTATTAAACTGATGAGAGATCAAAACCAAAATGA
AGCAGCTCTAAGCGCTATGAATGGCGCCAACACCGCCCTGACACATCGTA
ATTCTCAAACACAAATGTTCAGTAATGAAATGATGAAGAAAATGGATATG
ATAGTAGAACGGCTTGAGAATGATGCTGACGATGAGAAGATCAAACGTGA
ATGGAAGATCTGTGCTTACACATTGGATCGTCTGTTACTGGTCACATTTG
TAATCATATTTATCATCACAGTATTGGCTTGTTTCGTCACTGCTTCATTT
CATGGCGAAACTGAATAAAATCATATACAGCAAATTCAGAATGGAAGTTA
GAATCAGCAACCATGAAGCAAATTAACATGACGTACACGTGTTGTCCTAA
TACCCATTTCCCAATCATTCATGCTACAGTGAAATTACACCGTAAACCAT
TGTATTACTTACTGAATATGATCTTCCCAATGGTTTTGATCAGTTTAATG
ACCACGTTGACCTTCTTCTTACCAGCTGAATCAGCATTGAAAATGATAAG
AAATTCGGTGGGAGTCTAGATCAGTTGAACAATCGAGTCATTGTCCAATC
AAACGGTGAAGTCGCCTGGTTAACACCTGCTCTTCTCATTGCTAAATGTC
CAATGAACATCAAATACTTTCCATTCGATGAACAAGAATGTACATTCGAA
TTTGGGAGCTGGACGTACGATGGATCTCAATTGGATGTTGATGTAAGAAG
CACTGAAATCAACTTGAATTGAGAAAAGTGAGCGGATCGATGCTTTCTTC
TTTATAAGACAGTTTTGGACGGACAACCAATTAGTATGGGATGCAAAAGA
TTACAACAATGTTCATCATATACACCTATCGCCTTCTAAAGTGTGGAAAC
CTGATATTGTCCTCTACAATAAATGGCAAACATGTTTCTTTATCTTGTTC
TTATCAACATTTTTGTTACTGTTTCGCTGGCTGTTCCGCAAAATGGAGAA
AGTCGAGTAATTAGAGATATTTTGCAGAATTATTCCGTGGACGCACGACC
TGTTTCAAATGATAGTGATCCTGTTAGATTGAAGATTGGATTGGAATTAA
ACCAGGTTATTGATATCGTGAAAGAGTTGGGTTAGCAATCACTTTGTTCC
TTTCAATGACTGTCTTCATGCTCATCGTTGATTCATTGATGCCGGAAACC
TCTGATACTGTTCCTATAGTAACCATTTTCTTTGGTGCTGCCATGTTAGA
AATGATGGTTATGATCGTAGCAACATGCGTCATTTTGAAAATGCATTCTG
CAGTTCATCCCTTACCGAAATGGGTGCGAGGACTTTTGTACGAGAATTTA
TCGTACAAACTCGGTATTCGTCAAAAAACCAAAGTCCTACCAAGCGACGA
GGAAGAAAAAAAGAAAGATAGCATGACGTCATTCTCAAAAGAAAACAATG
GCTATTTTCACGTGCCCGAAAATAATCTACAACGTATTAAACTGATGAGA
GATCAAAACCAAAATGAAGCAGCTCTAAGCGCTATGAATGGCGCCAACAC
CGCCCTGACACATCGTAATTCTCAAACACAAATGTTCAGTAATGAAATGA
TGAAGAAAATGGATATGATAGTAGAACGGCTTGAGAATGATGCTGACGAT
GAGAAGATCAAACGTGAATGGAAGATCTGTGCTTACACATTGGATCGTCT
GTTACTGGTCACATTTGTAATCATATTTATCATCACAGTATTGGCTTGTT
TCGTCACTGCTTCATTTCATGGCGAAACTGAATAAAATCATATACAGCAA
ATTCAGAATGGAAGTTAGAATCAGCAACCATGAAGCAAATTAACATGACG
TACACGTGTTGTCCTAATACCCATTTCCCAATCATTCATGCTACAGTGAA
ATTACACCGTAAACCATTGTATTACTTACTGAATATGATCTTCCCAATGG
TTTTGATCAGTTTAATGACCACGTTGACCTTCTTCTTACCAGCTGAATCA
GCATTGAAAATGATAAGAAATTCGGTGGGAGTCTAGATCAGTTGAACAAT
CGAGTCATTGTCCAATCAAACGGTGAAGTCGCCTGGTTAACACCTGCTCT
TCTCATTGCTAAATGTCCAATGAACATCAAATACTTTCCATTCGATGAAC
AAGAATGTACATTCGAATTTGGGAGCTGGACGTACGATGGATCTCAATTG
GATGTTGATGTAAGAAGCACTGAAATCAACTTGAATTGAGAAAAGTGAGC
GGATCGATGCTTTCTTCTTTATAAGACAGTTTTGGACGGACAACCAATTA
GTATGGGATGCAAAAGATTACAACAATGTTCATCATATACACCTATCGCC
TTCTAAAGTGTGGAAACCTGATATTGTCCTCTACAATAAATGGCAAACAT
GTTTCTTTATCTTGTTCTTATCAACATTTTTGTTACTGTTTCGCTGGCTG
TTCCGCAAAATGGAGAAAGTCGAGTAATTAGAGATATTTTGCAGAATTAT
TCCGTGGACGCACGACCTGTTTCAAATGATAGTGATCCTGTTAGATTGAA
GATTGGATTGGAATTAAACCAGGTTATTGATATCGTGAAAGAGTTGGGTT
AGCAATCACTTTGTTCCTTTCAATGACTGTCTTCATGCTCATCGTTGATT
CATTGATGCCGGAAACCTCTGATACTGTTCCTATAGTAACCATTTTCTTT
GGTGCTGCCATGTTAGAAATGATGGTTATGATCGTAGCAACATGCGTCAT
TTTGAAAATGCATTCTGCAGTTCATCCCTTACCGAAATGGGTGCGAGGAC
TTTTGTACGAGAATTTATCGTACAAACTCGGTATTCGTCAAAAAACCAAA
GTCCTACCAAGCGACGAGGAAGAAAAAAAGAAAGATAGCATGACGTCATT
CTCAAAAGAAAACAATGGCTATTTTCACGTGCCCGAAAATAATCTACAAC
GTATTAAACTGATGAGAGATCAAAACCAAAATGAAGCAGCTCTAAGCGCT
ATGAATGGCGCCAACACCGCCCTGACACATCGTAATTCTCAAACACAAAT
GTTCAGTAATGAAATGATGAAGAAAATGGATATGATAGTAGAACGGCTTG
AGAATGATGCTGACGATGAGAAGATCAAACGTGAATGGAAGATCTGTGCT
TACACATTGGATCGTCTGTTACTGGTCACATTTGTAATCATATTTATCAT
CACAGTATTGGCTTGTTTCGTCACTGCTTCATTTCATGGCGAAACTGAAT
AAAATCATATACAGCAAATTCAGAATGGAAGTTAGAATCAGCAACCATGA
AGCAAATTAACATGACGTACACGTGTTGTCCTAATACCCATTTCCCAATC
ATTCATGCTACAGTGAAATTACACCGTAAACCATTGTATTACTTACTGAA
TATGATCTTCCCAATGGTTTTGATCAGTTTAATGACCACGTTGACCTTCT
TCTTACCAGCTGAATCAGCATTGAAAATGATAAGAAATTCGGTGGGAGTC
TAGATCAGTTGAACAATCGAGTCATTGTCCAATCAAACGGTGAAGTCGCC
TGGTTAACACCTGCTCTTCTCATTGCTAAATGTCCAATGAACATCAAATA
CTTTCCATTCGATGAACAAGAATGTACATTCGAATTTGGGAGCTGGACGT
ACGATGGATCTCAATTGGATGTTGATGTAAGAAGCACTGAAATCAACTTG
AATTGAGAAAAGTGAGCGGATCGATGCTTTCTTCTTTATAAGACAGTTTT
GGACGGACAACCAATTAGTATGGGATGCAAAAGATTACAACAATGTTCAT
CATATACACCTATCGCCTTCTAAAGTGTGGAAACCTGATATTGTCCTCTA
CAATAAATGGCAAACATGTTTCTTTATCTTGTTCTTATCAACATTTTTGT
TACTGTTTCGCTGGCTGTTCCGCAAAATGGAGAAAGTCGAGTAATTAGAG
ATATTTTGCAGAATTATTCCGTGGACGCACGACCTGTTTCAAATGATAGT
GATCCTGTTAGATTGAAGATTGGATTGGAATTAAACCAGGTTATTGATAT
CGTGAAAGAGTTGGGTTAGCAATCACTTTGTTCCTTTCAATGACTGTCTT
CATGCTCATCGTTGATTCATTGATGCCGGAAACCTCTGATACTGTTCCTA
TAGTAACCATTTTCTTTGGTGCTGCCATGTTAGAAATGATGGTTATGATC
GTAGCAACATGCGTCATTTTGAAAATGCATTCTGCAGTTCATCCCTTACC
GAAATGGGTGCGAGGACTTTTGTACGAGAATTTATCGTACAAACTCGGTA
TTCGTCAAAAAACCAAAGTCCTACCAAGCGACGAGGAAGAAAAAAAGAAA
GATAGCATGACGTCATTCTCAAAAGAAAACAATGGCTATTTTCACGTGCC
CGAAAATAATCTACAACGTATTAAACTGATGAGAGATCAAAACCAAAATG
AAGCAGCTCTAAGCGCTATGAATGGCGCCAACACCGCCCTGACACATCGT
AATTCTCAAACACAAATGTTCAGTAATGAAATGATGAAGAAAATGGATAT
GATAGTAGAACGGCTTGAGAATGATGCTGACGATGAGAAGATCAAACGTG
AATGGAAGATCTGTGCTTACACATTGGATCGTCTGTTACTGGTCACATTT
GTAATCATATTTATCATCACAGTATTGGCTTGTTTCGTCACTGCTTCATT
TCATGGCGAAACTGAATAAAATCATATACAGCAAATTCAGAATGGAAGTT
AGAATCAGCAACCATGAAGCAAATTAACATGACGTACACGTGTTGTCCTA
ATACCCATTTCCCAATCATTCATGCTACAGTGAAATTACACCGTAAACCA
TTGTATTACTTACTGAATATGATCTTCCCAATGGTTTTGATCAGTTTAAT
GACCACGTTGACCTTCTTCTTACCAGCTGAATCAGCATTGAAAATGATAA
GAAATTCGGTGGGAGTCTAGATCAGTTGAACAATCGAGTCATTGTCCAAT
CAAACGGTGAAGTCGCCTGGTTAACACCTGCTCTTCTCATTGCTAAATGT
CCAATGAACATCAAATACTTTCCATTCGATGAACAAGAATGTACATTCGA
ATTTGGGAGCTGGACGTACGATGGATCTCAATTGGATGTTGATGTAAGAA
GCACTGAAATCAACTTGAATTGAGAAAAGTGAGCGGATCGATGCTTTCTT
CTTTATAAGACAGTTTTGGACGGACAACCAATTAGTATGGGATGCAAAAG
ATTACAACAATGTTCATCATATACACCTATCGCCTTCTAAAGTGTGGAAA
CCTGATATTGTCCTCTACAATAAATGGCAAACATGTTTCTTTATCTTGTT
CTTATCAACATTTTTGTTACTGTTTCGCTGGCTGTTCCGCAAAATGGAGA
AAGTCGAGTAATTAGAGATATTTTGCAGAATTATTCCGTGGACGCACGAC
CTGTTTCAAATGATAGTGATCCTGTTAGATTGAAGATTGGATTGGAATTA
AACCAGGTTATTGATATCGTGAAAGAGTTGGGTTAGCAATCACTTTGTTC
CTTTCAATGACTGTCTTCATGCTCATCGTTGATTCATTGATGCCGGAAAC
CTCTGATACTGTTCCTATAGTAACCATTTTCTTTGGTGCTGCCATGTTAG
AAATGATGGTTATGATCGTAGCAACATGCGTCATTTTGAAAATGCATTCT
GCAGTTCATCCCTTACCGAAATGGGTGCGAGGACTTTTGTACGAGAATTT
ATCGTACAAACTCGGTATTCGTCAAAAAACCAAAGTCCTACCAAGCGACG
AGGAAGAAAAAAAGAAAGATAGCATGACGTCATTCTCAAAAGAAAACAAT
GGCTATTTTCACGTGCCCGAAAATAATCTACAACGTATTAAACTGATGAG
AGATCAAAACCAAAATGAAGCAGCTCTAAGCGCTATGAATGGCGCCAACA
CCGCCCTGACACATCGTAATTCTCAAACACAAATGTTCAGTAATGAAATG
ATGAAGAAAATGGATATGATAGTAGAACGGCTTGAGAATGATGCTGACGA
TGAGAAGATCAAACGTGAATGGAAGATCTGTGCTTACACATTGGATCGTC
TGTTACTGGTCACATTTGTAATCATATTTATCATCACAGTATTGGCTTGT
TTCGTCACTGCTTCATTTCATGGCGAAACTGAATAAAATCATATACAGCA
AATTCAGAATGGAAGTTAGAATCAGCAACCATGAAGCAAATTAACATGAC
GTACACGTGTTGTCCTAATACCCATTTCCCAATCATTCATGCTACAGTGA
AATTACACCGTAAACCATTGTATTACTTACTGAATATGATCTTCCCAATG
GTTTTGATCAGTTTAATGACCACGTTGACCTTCTTCTTACCAGCTGAATC
AGCATTGAAAATGATAAGAAATTCGGTGGGAGTCTAGATCAGTTGAACAA
TCGAGTCATTGTCCAATCAAACGGTGAAGTCGCCTGGTTAACACCTGCTC
TTCTCATTGCTAAATGTCCAATGAACATCAAATACTTTCCATTCGATGAA
CAAGAATGTACATTCGAATTTGGGAGCTGGACGTACGATGGATCTCAATT
GGATGTTGATGTAAGAAGCACTGAAATCAACTTGAATTGAGAAAAGTGAG
CGGATCGATGCTTTCTTCTTTATAAGACAGTTTTGGACGGACAACCAATT
AGTATGGGATGCAAAAGATTACAACAATGTTCATCATATACACCTATCGC
CTTCTAAAGTGTGGAAACCTGATATTGTCCTCTACAATAAATGGCAAACA
TGTTTCTTTATCTTGTTCTTATCAACATTTTTGTTACTGTTTCGCTGGCT
GTTCCGCAAAATGGAGAAAGTCGAGTAATTAGAGATATTTTGCAGAATTA
TTCCGTGGACGCACGACCTGTTTCAAATGATAGTGATCCTGTTAGATTGA
AGATTGGATTGGAATTAAACCAGGTTATTGATATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015174XLOC_015174Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027017-exon-sc0000600-1575043694:60822..61325TCONS_00027017-exon-sc0000600-1575043694:60822..61325Clytia hemisphaericaexon
TCONS_00027017-exon-sc0000600-1575043694:60160..60314TCONS_00027017-exon-sc0000600-1575043694:60160..60314Clytia hemisphaericaexon
TCONS_00027017-exon-sc0000600-1575043694:59069..59301TCONS_00027017-exon-sc0000600-1575043694:59069..59301Clytia hemisphaericaexon
TCONS_00027017-exon-sc0000600-1575043694:58126..58341TCONS_00027017-exon-sc0000600-1575043694:58126..58341Clytia hemisphaericaexon
TCONS_00027017-exon-sc0000600-1575043694:55241..56526TCONS_00027017-exon-sc0000600-1575043694:55241..56526Clytia hemisphaericaexon
TCONS_00027017-exon-sc0000600-1510915933:60822..61325TCONS_00027017-exon-sc0000600-1510915933:60822..61325Clytia hemisphaericaexon
TCONS_00027017-exon-sc0000600-1510915933:60160..60314TCONS_00027017-exon-sc0000600-1510915933:60160..60314Clytia hemisphaericaexon
TCONS_00027017-exon-sc0000600-1510915933:59069..59301TCONS_00027017-exon-sc0000600-1510915933:59069..59301Clytia hemisphaericaexon
TCONS_00027017-exon-sc0000600-1510915933:58126..58341TCONS_00027017-exon-sc0000600-1510915933:58126..58341Clytia hemisphaericaexon
TCONS_00027017-exon-sc0000600-1510915933:55241..56526TCONS_00027017-exon-sc0000600-1510915933:55241..56526Clytia hemisphaericaexon
TCONS_00027017-exon-sc0000600-1491911889:60822..61325TCONS_00027017-exon-sc0000600-1491911889:60822..61325Clytia hemisphaericaexon
TCONS_00027017-exon-sc0000600-1491911889:60160..60314TCONS_00027017-exon-sc0000600-1491911889:60160..60314Clytia hemisphaericaexon
TCONS_00027017-exon-sc0000600-1491911889:59069..59301TCONS_00027017-exon-sc0000600-1491911889:59069..59301Clytia hemisphaericaexon
TCONS_00027017-exon-sc0000600-1491911889:58126..58341TCONS_00027017-exon-sc0000600-1491911889:58126..58341Clytia hemisphaericaexon
TCONS_00027017-exon-sc0000600-1491911889:55241..56526TCONS_00027017-exon-sc0000600-1491911889:55241..56526Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00027017-proteinTCONS_00027017-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000600supercontigsc0000600:55241..61325 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.016237	0	0.0735372	0.0899309	0	0.0346057	0.146126	0.0977154	0.301017	0.44065	0.0164502	0.270343	8.82253	9.01649	1.73334	1.31595	1.76741	1.94896	9.52765	13.0044	3.24965	4.43359	0.744679	1.13401	2.94616	3.65623	0.0445282	0.0237608	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006201Neur_channel
IPR006029Neurotrans-gated_channel_TM
IPR006202Neur_chan_lig-bd
IPR018000Neurotransmitter_ion_chnl_CS
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0006811ion transport
Vocabulary: Molecular Function
TermDefinition
GO:0005216ion channel activity
GO:0005230extracellular ligand-gated ion channel activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006811 ion transport
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005230 extracellular ligand-gated ion channel activity
molecular_function GO:0005216 ion channel activity
Blast
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BLAST of TCONS_00027017 vs. Swiss-Prot (Human)
Match: ACHA7 (Neuronal acetylcholine receptor subunit alpha-7 OS=Homo sapiens GN=CHRNA7 PE=1 SV=5)

HSP 1 Score: 249.21 bits (635), Expect = 7.732e-73
Identity = 141/474 (29.75%), Postives = 253/474 (53.38%), Query Frame = 1 
Query:  325 LYLVLINIFVTVSLAVPQNGE--SRVIRDILQNYSVDARPVSNDSDPVRLKIGLELNQVIDIIEKSERIDAFFFIRQFWTDNQLVWDAKDYNNVHHIHLSPSKVWKPDIVLYNNIENDKKFGGSLDQLNNRVIVQSNGEVAWLTPALLIAKCPMNIKYFPFDEQECTFEFGSWTYDGSQLDVDVRSTEINLKSYTANSEWKLESATMKQINMTYTCCPNTHFPIIHATVKLHRKPLYYLLNMIFPMVLISLMTTLTFFLPAESGERVGLAITLFLSMTVFMLIVDSLMPETSDTVPIVTIFFGAAMLEMMVMIVATCVILKMHSA---VHPLPKWVRGLLYENLSYKLGIRQ--KTKVLPSDEEEKKKDSMTSFS--------KENNGYFHVPENNLQRIKLM--RDQNQNEAALSAMNGANTALTHRNSQTQMFSN--EMMKKMDMIVERLENDADDEKIKREWKICAYTLDR 1689
            ++L L    + VSL     GE   ++ +++++NY+   RPV+NDS P+ +   L L Q++D+ EK++ +    +++  WTD+ L W+  +Y  V  +     ++WKPDI+LYN+   D++F  +    +  V+V S+G   +L P +  + C +++++FPFD Q C  +FGSW+Y G  LD+ ++  E ++  Y  N EW L     K+    Y CC    +P +  TV + R+ LYY LN++ P VLIS +  L F LPA+SGE++ L IT+ LS+TVFML+V  +MP TSD+VP++  +F + M+ + + +V T ++L+ H        +PKW R +L    ++ L +++  + KV P+ + ++++ S+ S            N    ++    L  +  +   D       ++     +  L H     +   +  ++++++  I  R     + E +  EWK  A  +DR
Sbjct:    8 VWLALAASLLHVSL----QGEFQRKLYKELVKNYNPLERPVANDSQPLTVYFSLSLLQIMDVDEKNQVLTTNIWLQMSWTDHYLQWNVSEYPGVKTVRFPDGQIWKPDILLYNS--ADERFDATF---HTNVLVNSSGHCQYLPPGIFKSSCYIDVRWFPFDVQHCKLKFGSWSYGGWSLDLQMQ--EADISGYIPNGEWDLVGIPGKRSERFYECC-KEPYPDVTFTVTMRRRTLYYGLNLLIPCVLISALALLVFLLPADSGEKISLGITVLLSLTVFMLLVAEIMPATSDSVPLIAQYFASTMIIVGLSVVVTVIVLQYHHHDPDGGKMPKWTRVILLNWCAWFLRMKRPGEDKVRPACQHKQRRCSLASVEMSAVAPPPASNGNLLYIGFRGLDGVHCVPTPDSGVVCGRMACSPTHDEHLLHGGQPPEGDPDLAKILEEVRYIANRFRCQDESEAVCSEWKFAACVVDR 469
The following BLAST results are available for this feature:
BLAST of TCONS_00027017 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ACHA77.732e-7329.75Neuronal acetylcholine receptor subunit alpha-7 OS... [more]
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