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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026868 ID=TCONS_00026868|Name=TCONS_00026868|organism=Clytia hemisphaerica|type=transcript|length=1185bp
GCATAAGTTTCTTCGTCTAAGTCACGCCCCGCCTTTCTCAAATTTGAGCA
TGCTTCATCAAACTTATCAATAAATTGATCAATGTCCTCGTCGGTTTCTC
TTTTCAAATTAACAAAACGATTCCAAGCCTTCTTTTTTAAGGCAAGGTCA
TCTTCCTTGAAACGTTTATCAAGAACTTCCAAAATTTGTTCAACACAATT
TTCATGAAAGACATTTATCTTTCCTAACTGGGCTTCGGTAATAAGTTTAT
TGCCAATATTGTCTTCTTTACGTCTTTCAATGTTTGAAATAGCATGTATC
CTCTGTCGCCTTTAGCAAGCTTTGCTTTCTCCCATGCTGTACTCCACATC
TCAACCAGAAATCTCCAATCATTATAACTCTGTTTTTCTGGATCCCACAC
TGGAGGTTTCAACCGATCAATCTTTTTGTCTGCCATGATgtcaacttttt
gtttttaaatcaaCCACACTTCTGCTACCatttgttaaattttcatatat
atatttttaaacccCCAGCAGGGAACACAATATCTAACtctataaaatat
aaaacaaaacatGAATTAACACATACATGGCGAGTTGGGATTGATGGCAC
CACATGGACCATGAATCATCGATGCTTTGATGGTTTCGTATAATTCGGGA
TCCTCATTGATATCTGGGATCTCGGCACAGATCAAACTGTCAATGTCTTC
AGGGGAACGTATTTTGTCACCATCCTCAAGAGTAATCAACATATGAGCGT
GGGGTAGGCCacgcttttgaaattcaattacATGAACAGAAACTTTACCT
TTACCAAAGATACCTTTAGTTAGAATGTCGTTTTTAAGTGCCTTCAACTT
TGCACTAAAAACACGGGAAACTAAATCAGGACGATCACTTGCGGTTTGGC
CTGGTAAAAGGTTTTCCGTAATCTCTCTCCATTTTGGGTTACATGTCATT
GTAACAAACAAATCAGGCTTACCAAATACAGCAACCACTGCCATAGCATC
TAGATAGAGTTGATGCATGTTACGGGGACTTCCTGCAAAGGTTGATGGTA
GAATAGTGACCCTACCAACTCTGGCCTGGCGTGCTTCTGCTTGATCATTC
AGATAATCATGCAAACCCCTGTAGCGATCAGCCCTGATTGTAGCCTGGTT
GGTTCTATACCAGTGTAATCGATCACCTTCGATTT Run BLAST on NCBI protein sequence of TCONS_00026868-protein >TCONS_00026868-protein ID=TCONS_00026868-protein|Name=TCONS_00026868-protein|organism=Clytia hemisphaerica|type=polypeptide|length=205bp
IEGDRLHWYRTNQATIRADRYRGLHDYLNDQAEARQARVGRVTILPSTFA
GSPRNMHQLYLDAMAVVAVFGKPDLFVTMTCNPKWREITENLLPGQTASD
RPDLVSRVFSAKLKALKNDILTKGIFGKGKVSVHVIEFQKRGLPHAHMLI
TLEDGDKIRSPEDIDSLICAEIPDINEDPELYETIKASMIHGPCGAINPN
SPCMC Run BLAST on NCBI transcript from alignment at sc0000591:234795..235979 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00026868 ID=TCONS_00026868|Name=TCONS_00026868|organism=Clytia hemisphaerica|type=transcript|length=1185bp|location=Sequence derived from alignment at sc0000591:234795..235979 (Clytia hemisphaerica)
AAATCGAAGGTGATCGATTACACTGGTATAGAACCAACCAGGCTACAATC
AGGGCTGATCGCTACAGGGGTTTGCATGATTATCTGAATGATCAAGCAGA
AGCACGCCAGGCCAGAGTTGGTAGGGTCACTATTCTACCATCAACCTTTG
CAGGAAGTCCCCGTAACATGCATCAACTCTATCTAGATGCTATGGCAGTG
GTTGCTGTATTTGGTAAGCCTGATTTGTTTGTTACAATGACATGTAACCC
AAAATGGAGAGAGATTACGGAAAACCTTTTACCAGGCCAAACCGCAAGTG
ATCGTCCTGATTTAGTTTCCCGTGTTTTTAGTGCAAAGTTGAAGGCACTT
AAAAACGACATTCTAACTAAAGGTATCTTTGGTAAAGGTAAAGTTTCTGT
TCATgtaattgaatttcaaaagcgtGGCCTACCCCACGCTCATATGTTGA
TTACTCTTGAGGATGGTGACAAAATACGTTCCCCTGAAGACATTGACAGT
TTGATCTGTGCCGAGATCCCAGATATCAATGAGGATCCCGAATTATACGA
AACCATCAAAGCATCGATGATTCATGGTCCATGTGGTGCCATCAATCCCA
ACTCGCCATGTATGTGTTAATTCatgttttgttttatattttatagaGTT
AGATATTGTGTTCCCTGCTGGgggtttaaaaatatatatatgaaaattta
acaaatGGTAGCAGAAGTGTGGttgatttaaaaacaaaaagttgacATCA
TGGCAGACAAAAAGATTGATCGGTTGAAACCTCCAGTGTGGGATCCAGAA
AAACAGAGTTATAATGATTGGAGATTTCTGGTTGAGATGTGGAGTACAGC
ATGGGAGAAAGCAAAGCTTGCTAAAGGCGACAGAGGATACATGCTATTTC
AAACATTGAAAGACGTAAAGAAGACAATATTGGCAATAAACTTATTACCG
AAGCCCAGTTAGGAAAGATAAATGTCTTTCATGAAAATTGTGTTGAACAA
ATTTTGGAAGTTCTTGATAAACGTTTCAAGGAAGATGACCTTGCCTTAAA
AAAGAAGGCTTGGAATCGTTTTGTTAATTTGAAAAGAGAAACCGACGAGG
ACATTGATCAATTTATTGATAAGTTTGATGAAGCATGCTCAAATTTGAGA
AAGGCGGGGCGTGACTTAGACGAAGAAACTTATGC Coding sequence (CDS) from alignment at sc0000591:234795..235979 >TCONS_00026868 ID=TCONS_00026868|Name=TCONS_00026868|organism=Clytia hemisphaerica|type=CDS|length=618bp|location=Sequence derived from alignment at sc0000591:234795..235979 (Clytia hemisphaerica)
ATCGAAGGTGATCGATTACACTGGTATAGAACCAACCAGGCTACAATCAG
GGCTGATCGCTACAGGGGTTTGCATGATTATCTGAATGATCAAGCAGAAG
CACGCCAGGCCAGAGTTGGTAGGGTCACTATTCTACCATCAACCTTTGCA
GGAAGTCCCCGTAACATGCATCAACTCTATCTAGATGCTATGGCAGTGGT
TGCTGTATTTGGTAAGCCTGATTTGTTTGTTACAATGACATGTAACCCAA
AATGGAGAGAGATTACGGAAAACCTTTTACCAGGCCAAACCGCAAGTGAT
CGTCCTGATTTAGTTTCCCGTGTTTTTAGTGCAAAGTTGAAGGCACTTAA
AAACGACATTCTAACTAAAGGTATCTTTGGTAAAGGTAAAGTTTCTGTTC
ATgtaattgaatttcaaaagcgtGGCCTACCCCACGCTCATATGTTGATT
ACTCTTGAGGATGGTGACAAAATACGTTCCCCTGAAGACATTGACAGTTT
GATCTGTGCCGAGATCCCAGATATCAATGAGGATCCCGAATTATACGAAA
CCATCAAAGCATCGATGATTCATGGTCCATGTGGTGCCATCAATCCCAAC
TCGCCATGTATGTGTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00026868-exon-sc0000591-1491911889:234795..235979 | TCONS_00026868-exon-sc0000591-1491911889:234795..235979 | Clytia hemisphaerica | exon |
| TCONS_00026868-exon-sc0000591-1510915933:234795..235979 | TCONS_00026868-exon-sc0000591-1510915933:234795..235979 | Clytia hemisphaerica | exon |
| TCONS_00026868-exon-sc0000591-1575043694:234795..235979 | TCONS_00026868-exon-sc0000591-1575043694:234795..235979 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000591 | supercontig | sc0000591:234795..235979 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR025476 | Helitron_helicase-like |
Blast
The following BLAST results are available for this feature:
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