TCONS_00026850 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026850
Unique NameTCONS_00026850
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length869

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026850 ID=TCONS_00026850|Name=TCONS_00026850|organism=Clytia hemisphaerica|type=transcript|length=869bp
gTTCAAGCATTTTTTGAACAGCTATTATAataaatatattatattttcac
AAGTCAAGTTCTAACAAAAATGTAACCATTCGTAAAAATAAGTAATGAAA
GGTTTCTAGCAACTTTCATTTATTcccataaaaacaaaaaatatgcaCCA
CTTCTATTTTTCCGAAATAAAACTTTACACAATCATatcattttgtgaaa
atttatgTCCATTATTCTCCATGCAAAATAGTGTCTGATAACAAACATTG
AATCATCCACAAAACATACAATTCCGTTAATCCAAAAGTACATCAAATTC
AAAGGTACAATCATGAGAACATTCACCAGTGATACTAAAACCAGAAACGT
AACATTATACATTGTAAACAGGATAGAACGTAAACATGATAAAACGTAAA
TAGCATACAACGTTAGCGGGATATAGTGTAAACAGGGTACAACATAATTA
GGATACATCATAATCAGGATACAGGATATATCGTTAACAGGATACAGGAT
ACATCGTTATCGGGAGAAATGTAAAGCAGTATGACAAGCATTTTTCCCAA
CATTTTGATCAAGATCCGacctttattttgatatttgtttttaactttAT
GCAGCATGTTTATCATGAAGAATGAATAACGATTCGTGAAGATTGATAAA
CGTGTAATATGTATTCGACTTTGCTGAGTTTTCGTGACAAATGAATGTGC
ATCCAAGTGTAaagcttaaaataaaaaaaacaatgaaatcagAGGATTTt
tgatcaaagaaaataaacgtTTATAAGAGTCGATAGATTccgcactaatg
tacttcccaattctctcaaaggtaacgaatcgagtggggatTGAACTTAC
GACCTCTCGCTTGGCGGGC
Run BLAST on NCBI

transcript from alignment at sc0000591:7200..8068

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026850 ID=TCONS_00026850|Name=TCONS_00026850|organism=Clytia hemisphaerica|type=transcript|length=869bp|location=Sequence derived from alignment at sc0000591:7200..8068 (Clytia hemisphaerica)
GCCCGCCAAGCGAGAGGTCGTAAGTTCAatccccactcgattcgttacct
ttgagagaattgggaagtacattagtgcggAATCTATCGACTCTTATAAa
cgtttattttctttgatcaaAAATCCTctgatttcattgttttttttatt
ttaagcttTACACTTGGATGCACATTCATTTGTCACGAAAACTCAGCAAA
GTCGAATACATATTACACGTTTATCAATCTTCACGAATCGTTATTCATTC
TTCATGATAAACATGCTGCATaaagttaaaaacaaatatcaaaataaagg
tCGGATCTTGATCAAAATGTTGGGAAAAATGCTTGTCATACTGCTTTACA
TTTCTCCCGATAACGATGTATCCTGTATCCTGTTAACGATATATCCTGTA
TCCTGATTATGATGTATCCTAATTATGTTGTACCCTGTTTACACTATATC
CCGCTAACGTTGTATGCTATTTACGTTTTATCATGTTTACGTTCTATCCT
GTTTACAATGTATAATGTTACGTTTCTGGTTTTAGTATCACTGGTGAATG
TTCTCATGATTGTACCTTTGAATTTGATGTACTTTTGGATTAACGGAATT
GTATGTTTTGTGGATGATTCAATGTTTGTTATCAGACACTATTTTGCATG
GAGAATAATGGAcataaattttcacaaaatgatATGATTGTGTAAAGTTT
TATTTCGGAAAAATAGAAGTGGtgcatattttttgtttttatgggAATAA
ATGAAAGTTGCTAGAAACCTTTCATTACTTATTTTTACGAATGGTTACAT
TTTTGTTAGAACTTGACTTgtgaaaatataatatatttatTATAATAGCT
GTTCAAAAAATGCTTGAAc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015078XLOC_015078Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026850-exon-sc0000591-1491911889:7200..8068TCONS_00026850-exon-sc0000591-1491911889:7200..8068Clytia hemisphaericaexon
TCONS_00026850-exon-sc0000591-1510915933:7200..8068TCONS_00026850-exon-sc0000591-1510915933:7200..8068Clytia hemisphaericaexon
TCONS_00026850-exon-sc0000591-1575043694:7200..8068TCONS_00026850-exon-sc0000591-1575043694:7200..8068Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000591supercontigsc0000591:7200..8068 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.48718	2.96342	1.51961	0.171277	33.1496	16.2414	29.3049	28.8685	10.4056	11.5843	11.6273	12.8963	10.6232	7.03867	4.76114	5.54395	3.19484	4.35352	10.6516	10.1321	26.1514	25.4106	14.3966	18.5241	2.66241	5.82979	45.298	46.7528	80.9658	90.6099
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00026850 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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