TCONS_00026844 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026844
Unique NameTCONS_00026844
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length330

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026844 ID=TCONS_00026844|Name=TCONS_00026844|organism=Clytia hemisphaerica|type=transcript|length=330bp
TATCTCACATGAAGACCTCAAACTAACCCTACAAGATACTCTCCTGTACA
CAAAGGTACAAGACAGTCACCCAAGAAACTTGAACCGCCAACAACCAATA
CGGTAAAGTATGGCTCTTACAGTGTAGCTTCCCTAATAACTAAGGACTGG
AACGAACTCCATACTAAGGTTTTGATTCAAGACTTAAGCGAATGCTCTAA
ACAAActcttaaaaaaacatttacaccattttattttaactaaaCTTGCA
TCTGATTAGACTCTGGCTATTTACTTTCCTCTCTCTTTGTTCTTCTTTAT
TCTTTTGGTCCtttctttattattattttt
Run BLAST on NCBI

transcript from alignment at sc0000591:115448..119602-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026844 ID=TCONS_00026844|Name=TCONS_00026844|organism=Clytia hemisphaerica|type=transcript|length=4155bp|location=Sequence derived from alignment at sc0000591:115448..119602- (Clytia hemisphaerica)
TATCTCACATGAAGACCTCAAACTAACCCTACAAGGTAAGAACTTTGATT
TGGTCCTTGATTCAAGCAATGATTTTAACTTGCAATTTTTTAGAGACATA
GACTCTGCACTGAATCAAGAGGATCATGTTGAAAACAATCTTCAAAAATT
TTGAATGTCCTTACCTCTCTCTCAGTGAGGTCAACCAAAAACATAAAAAC
AATAACTCTATATCTGCACTTCATTTAACCCTATTATTATCAGGCTTTTT
TGGATTTTGTATTCTCAAGGGGGGGTGTTTTCCACCAGCCTTGCATAACT
TTTGATCTAGAAAAGGTATGGACTTNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNTGGACTTGAAGTTTGGCACAAATGTTCTCTACCATAAAAGGAGTCC
ATATAAAAAAATTTGGGTTGATGACGTCATCATAAAGATGATGACGTCAT
CACAAAGATGATGACGTCATCACAAAGTTTCATAATTATCGCTTACCAAT
GAAAAAGTACTATTCAATAAAATAGCAATTAAAGTTGAATGAATGGAGAT
TTTTCAATTCTGTTTTGAAATTCTAAAAGCCAAAAAGAATATCTTTAACA
TATTTGCCGGTTTTTAACATACGAATAAAATCAAGGTTTAAAATCCATGC
AGAAAATGAGTAAATCTTTTCATAAAACAATGACGTCATTTTTGATGACG
TCAGCAGTTTTTGAAAATTTTTAAAATATTTTTTAAAATCTATTATTGAC
ACCTAGAACCTATCAAAATTTGAAGTCAGTTGGATGCCTAGATCTAAAGT
TATGCTAAATTTAAGATTTTGGGATTTAACAGGGTTTTATCTGGATTTTA
TGATATGCCTGCACAAAAAAGTCATAAAACTTGATCTGGCCGGTGTATAA
TTGTAAAATTTGGTATACATGCTGCTAATAGAATTATATTAAAAGTCAAA
AACTTTCAGAGTGTTAAAAAAAATTTTCAGTGAGCTATTAGCAAAAGAGT
GCCAGCCTGGTGGAAAACACCCCCCCTGATAAAAATAGGGTTAAACATTG
CTTCCCTGAGCCTTCATCATGGTGAACTTGTTACAATTATCAATAGCTGT
GATATTCCTTTCAATTTCATTGGTATAACAGAAACTGGCTTCAAAGATGT
AAATTCTGCAAAAAGTTCTGCTGTAATTACCAATTACAATCACTTTGACT
GTTGCACAAAGTCCAACCGAGGAGGTGCTAGAATCTATGTCTCTGAAGGA
TTTGACTCTATTCCAAGGCCTGACCTAGATATTTACAAGGAAAATGAAAT
AGGATCTGTAGTCAGGGAAATAATCTATGATAAAAACTTTATTGTCGCTT
GTATTTATAAACACCCTGAAGCGGATGCTACTAATTTTCAAACCCTATAC
TCAAATCTACTTGATAAGATTGTATCAGAAAAGAAAAAAGCTATAATATT
CGGAGATTTTAATCTAGATCTTCTACGGGCAGATTCCAAATCACACATAG
AAGATTTTCTCAATAGCAATCTATCTCATTTTTTCTCTCCTACAATTACA
AGACCTACCAGGATAACTCCAGGTTCAAAAACTCTCATTGACAACATTTT
TTCAAGCTTTGTCACCACTGACATGTTTTCATGTAACCTGATAAGCTCTA
TTTCTGATCACCTCCCTCAAATATTGAAATTAAATCTGAAACCTAAAAAA
GCTCCAAAGATTAAAATCTCTAAAAGGGACTTGAGAAATTTTAACAAAGA
CGATTTTCTAATGCAATTCTTGTCTCTTGATTGGGACAATCTTTTCCAAA
ACAAAAACAACTCTGACAAACTAGAAATTTTCATAACTGAGGTTAACAAA
GTCATTGAGAACCATGCTCCCATGAAACACACCTGCAAGAAATCTATGCA
ACCAAAAAATCCCTGGACATCCAAAGGCTTGCTGAAATCAATCAACACTA
AAAATTCTTTATATAAAAAATTCTTGAAGGCTAAAGACCCTGATCTCAAA
GCCCAAAAACATACTAACTTTAAAAAATACAGGAATCTGCTTTCGAAACT
CCTGAGAATGAGTAAAAACAAGTATTAAAATAATTTCTTTGCTGAGAACA
AACATGACCTAAAAAAAAGTGGAATGTAGTCAATGAAATAATTGGCACCA
AAACCATTTCTGATCTCTCGCCTAAACTTCTACTACACAATAATCGCGAA
ATAACCAACGACAAAGACATAGCTGAAACTTTCAATAATTTTTATGTCCC
CTCGGACTAACAAATACTTCATTGATTATTTAGGGGATCCATTATGTAAC
TCTATTCGTTTCAGGCAGATTACACCCACTGCTGTACTTAAACTTATCAA
TGATCTTGATGCTCAGAAGGCATCAGGACCTTCAAGTATTCCTACATCCT
TCCTAAAAATGATATCTCCAACTGGAAGCACCATATTATCTCACATCTTT
AACGTCAGCATTAAAGAAGGCATCTACCCTGATTGTTAAAAAAAGCTAAC
ATAAAACCTTTACACAAGAAAGACTCAAAACTAGATGTTGGCAATTACAG
ACCCATTTCTCTGCTATCCAACATAAATAAAATCTTCGAAAAACTCCTTC
ATTTCAGACTAGTCAAATTCTTCGAAAACAACAACATCTTTAGTGAAAAG
CAATTCGGTTTTAGAAAAGGTCACAGCACTAACCATGCTGTGATTGCCCT
TACTGAAGTTGTCAGATCAGCATTAGATAATGGTAATTTTGCAGCTGGAG
TTTTCATTGATCTTAAGAAGGCTTTTGATACAGTAGAGCATACCATCCTG
CTACATAAACTGGTTCATTATGGCATCAGAGGACCAGCTCTTGCTTTACT
CAGGTCTTATCTCTCTAATCGTACTCACTGNCGATCTTATGAAGGCTTTT
GATACAGTAGAGCATACCATTTTGCTACATAAACTGGTTCATTATGGCAT
CAGAGGACCTGCTCTTGCTTTACTCAGGTCTTATCTCTCTAATCGTACTC
ACTGTGTCGATATAAGAAACACACATTCTGATCATGTCCCCATCAAACAT
GGTGTCCCTCAAGGATCTGTTTTGGGCCCCCTGTTATTCATCATTTATAT
NTAAGAAACACACATTCTGATCATGTCCCCATCAAACATGGTGTCCCTCA
AGGATCTGTTTTGGGCTCCCTGTTATTCATCATTTATATTAATGGTCTCC
ATCGCTCCCTAGAAAACTCAGTAACTATTCATTTCGCTGACGACACTAGT
CTTATTTGCTGTGATGAATCTATAAAACATCTGAACAGAAAGGTTAACAG
GGATCTTGCTCTATTGGTCCATTGGCTGAGAGCAAACAAAATATGCCTTA
ACGCCTCAAAATCTGAAATAATCCTATTTAGAAGTCCCAGGAACACTTTT
ACTAAACATCTTAATTTCAGACTTAGTGGACCAAAACTTCATCTATCAAG
CAAAGCTAAATATCTTGGAATCCTGCTAGACGAGCATCTTTCTTGGGAAC
CTCAAATTCACAGTGTCTCGAACAAACTTTCTAGAACTGTTGGCTTCCTG
TCAAAACTCAGACATTTTGTGGACTTCAAAACACTTCTTTCTGTCTACTA
TGCTTTATTTGACTCACATATAAACTATTGTCTTCAAACTTTAGGTCATA
CCACTCAAGCCTCTTTCAAAAAAAAATTGAAGTTCTTCAAAATAAAGCCT
TGAGAGTTATACACTTTAAACATAGCAGACACTCGGCTCGCACACTCTTT
ATTAGATCTTCTATTTTGCCAATCAAAAAACAACTCAAAGTAAAGAACTG
CCTTTTTGCTCTCGACCATATTCAAAATAATCTACCTAAATACTTTTCAA
ACTACCTTAGATACTCTCCTGTACACAAAGGTACAAGACAGTCACCCAAG
AAACTTGAACCGCCAACAACCAATACGGTAAAGTATGGCTCTTACAGTGT
AGCTTCCCTAATAACTAAGGACTGGAACGAACTCCATACTAAGGTTTTGA
TTCAAGACTTAAGCGAATGCTCTAAACAAACTCTTAAAAAAACATTTACA
CCATTTTATTTTAACTAAACTTGCATCTGATTAGACTCTGGCTATTTACT
TTCCTCTCTCTTTGTTCTTCTTTATTCTTTTGGTCCTTTCTTTATTATTA
TTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015072XLOC_015072Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026844-exon-sc0000591-1575043694:119568..119602TCONS_00026844-exon-sc0000591-1575043694:119568..119602Clytia hemisphaericaexon
TCONS_00026844-exon-sc0000591-1575043694:115448..115742TCONS_00026844-exon-sc0000591-1575043694:115448..115742Clytia hemisphaericaexon
TCONS_00026844-exon-sc0000591-1510915933:119568..119602TCONS_00026844-exon-sc0000591-1510915933:119568..119602Clytia hemisphaericaexon
TCONS_00026844-exon-sc0000591-1510915933:115448..115742TCONS_00026844-exon-sc0000591-1510915933:115448..115742Clytia hemisphaericaexon
TCONS_00026844-exon-sc0000591-1491911889:119568..119602TCONS_00026844-exon-sc0000591-1491911889:119568..119602Clytia hemisphaericaexon
TCONS_00026844-exon-sc0000591-1491911889:115448..115742TCONS_00026844-exon-sc0000591-1491911889:115448..115742Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000591supercontigsc0000591:115448..119602 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0642581	0	0	0	0	1.04321	0	1.0924	0	0	0.160411	0	0	0	0.178665	0	0	0	0	0	0	0	0.196952	0	0	0	0.821847	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00026844 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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