|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026841 ID=TCONS_00026841|Name=TCONS_00026841|organism=Clytia hemisphaerica|type=transcript|length=543bp
GGACGATTTTGAAGTGGAAgatATTGGTCTAACATTGCACCAAATTAAAG
ATGTACAAACCAAAATTATGGCTTGGTTAACCACCCACCCTTCAGTGACG
AAGAAATTTTTCGCAGAGGAGGTACTTCAAAGAGGGGCTGGTACCTTCTC
TGACTATATGAAAACAACCATCGTGCCAACCTCAGAAGCCGGGAAAAAGC
ACTGGACAACAATGGCTGCGTTTTTGGATGATAAGTCGACACAAGATGCG
CTATTAAACAAGAAAGCCTCGTGCGATCGTGaGAAATCGGGACACAGTGG
TTTGAAAACACAGTCGTCGCCGAGGGTTTCTTCGTTCTCCAGCCAACAGA
AGGCAATCCTGAATGGCTATTATAAAGAACACTGTTTCATCGATAAAGAT
GAAACCAAAGAGTTAGCTCAAAGAACAAAACTCACCTCAAAACAGATTAA
TACATGGTTCAACAACCGACGATCCAAGGACCCTGAAGCCAAGAAACGTA
AACTTGCTAAttgagaaaataaatatatgtGTCATCATACAAA Run BLAST on NCBI protein sequence of TCONS_00026841-protein >TCONS_00026841-protein ID=TCONS_00026841-protein|Name=TCONS_00026841-protein|organism=Clytia hemisphaerica|type=polypeptide|length=170bp
DDFEVEDIGLTLHQIKDVQTKIMAWLTTHPSVTKKFFAEEVLQRGAGTFS
DYMKTTIVPTSEAGKKHWTTMAAFLDDKSTQDALLNKKASCDREKSGHSG
LKTQSSPRVSSFSSQQKAILNGYYKEHCFIDKDETKELAQRTKLTSKQIN
TWFNNRRSKDPEAKKRKLAN Run BLAST on NCBI transcript from alignment at sc0000591:173185..174840+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00026841 ID=TCONS_00026841|Name=TCONS_00026841|organism=Clytia hemisphaerica|type=transcript|length=1656bp|location=Sequence derived from alignment at sc0000591:173185..174840+ (Clytia hemisphaerica)
GGACGATTTTGAAGTGGAAgatgtaagtatttttttagTTTGTCAACAAC
tgaaacattttattttgtagTCATTGTCTCAGTAGCCCGgggcccggggt
ccacttaaaaagcttttttaaagactggatggcgcgattaagtggcccgg
tagtatatggtaatatgatTTTccctaggcggactgtaaaacagtcttTT
TCCGACAATTCAAAACGAGACGGGAAATTGCgtaatttaaaatcaaaaaa
aaagggTAGGGGTAAAACATTTCGAAAATGATGTGcgtgattttttttat
tctttttcctGATTTCACTATTTTggtttctttgattttattcgattgat
tttgaatttgatttgttttgattttatatgaTCTTTCATTGTTTATGTAA
TACGGATGGTTGACTTAACTTCTACGAGGTGCCAAATTTCGACAACTTCT
TCTAAACTTCTTTCGTTTTTCATAGATTGGTCTAACATTGCACCAAATTA
AAGATGTACAAACCAAAATTATGGCTTGGTTAACCACCCACCCTTCAGTG
ACGAAGAAATTTTTCGCAGAGGAGGTACTTCAAAGAGGGGCTGGTACCTT
CTCTGACTATATGAAAACAACCATCGTGCCAACCTCAGAAGCCGGGAAAA
AGCACTGGACAACAATGGCTGCGTTTTTGGATGATAAGTCGACACAAGAT
GCGCTATTAAACAAGAAAGCCTCGTGCGATCGTGGTAAGTCTTTTAtgta
ttttaaaattcattCCAAAATTGAATTTTCCAAATATGGGTGGGTTTAAG
ATAatgcttttctatttttatagGGTTTAAAATGTTTGGGAGGATCATTT
TTTCTCATTCTGAAGGCCTTGTTGTTTTCACTTCTGTAAACaggagtttt
cgaaaatccctttaaattttcaaacttttttagaGAAATCGGGACACAGT
GGTTTGAAAACACAGTCGTCGCCGAGGGTTTCTTCGTTCTCCAGCCAACA
GAAGGCAATCCTGAATGGCTATTATAAAGAACACTGTTTCATCGATAAAG
ATGAAACCAAAGAGTTAGCTCAAAGAACAAAACTCACCTCAAAACAGGTA
CGATACCAATTAAACACAGTAGTACCATCATAGTCACAGAGTAGTCGTTG
GATACTCTTTCTTAGCTagtatgtcataaacgtctgtcTTCTGTCTTCTC
GTGGGGAACATATTTTGGGAAGCTCAATATTGAATCATTGGAACCTATCA
TGCTAAATTGTAAGCGTGGGGATACCAGACAATTTCGTTTTTCGTATTAC
TAGACTTATTTTTAGCATCGggtaaatatttctaaacataGAATTACGAA
GAATCTCATGATTTTTATCATACTCTATGCCCCAAAAACTTGCCTTCTTT
TTTCGTGATTCCTTAGACACTTCTGATAGAAAGGTGTGATATGTAAAGAA
GGAAAGAAATAAAAGTTTCCATACTTCCGTGTATTGGAAGATTTTACTTT
CATGACTCTTTTCCAAGAAGAGAGCTCTGCATTCAAAAGTTAATTTTCCT
TATTTTAGATTAATACATGGTTCAACAACCGACGATCCAAGGACCCTGAA
GCCAAGAAACGTAAACTTGCTAAttgagaaaataaatatatgtGTCATCA
TACAAA Coding sequence (CDS) from alignment at sc0000591:173185..174840+ >TCONS_00026841 ID=TCONS_00026841|Name=TCONS_00026841|organism=Clytia hemisphaerica|type=CDS|length=2052bp|location=Sequence derived from alignment at sc0000591:173185..174840+ (Clytia hemisphaerica)
GACGATTTTGAAGTGGAAgatATTGGTCTAACATTGCACCAAATTAAAGA
TGTACAAACCAAAATTATGGCTTGGTTAACCACCCACCCTTCAGTGACGA
AGAAATTTTTCGCAGAGGAGGTACTTCAAAGAGGGGCTGGTACCTTCTCT
GACTATATGAAAACAACCATCGTGCCAACCTCAGAAGCCGGGAAAAAGCA
CTGGACAACAATGGCTGCGTTTTTGGATGATAAGTCGACACAAGATGCGC
TATTAAACAAGAAAGCCTCGTGCGATCGTGaGAAATCGGGACACAGTGGT
TTGAAAACACAGTCGTCGCCGAGGGTTTCTTCGTTCTCCAGCCAACAGAA
GGCAATCCTGAATGGCTATTATAAAGAACACTGTTTCATCGATAAAGATG
AAACCAAAGAGTTAGCTCAAAGAACAAAACTCACCTCAAAACAGATTAAT
ACATGGTTCAACAACCGACGATCCAAGGACCCTGAAGCCAAGAAACGTAA
ACTTGCTAAttgaGACGATTTTGAAGTGGAAgatATTGGTCTAACATTGC
ACCAAATTAAAGATGTACAAACCAAAATTATGGCTTGGTTAACCACCCAC
CCTTCAGTGACGAAGAAATTTTTCGCAGAGGAGGTACTTCAAAGAGGGGC
TGGTACCTTCTCTGACTATATGAAAACAACCATCGTGCCAACCTCAGAAG
CCGGGAAAAAGCACTGGACAACAATGGCTGCGTTTTTGGATGATAAGTCG
ACACAAGATGCGCTATTAAACAAGAAAGCCTCGTGCGATCGTGaGAAATC
GGGACACAGTGGTTTGAAAACACAGTCGTCGCCGAGGGTTTCTTCGTTCT
CCAGCCAACAGAAGGCAATCCTGAATGGCTATTATAAAGAACACTGTTTC
ATCGATAAAGATGAAACCAAAGAGTTAGCTCAAAGAACAAAACTCACCTC
AAAACAGATTAATACATGGTTCAACAACCGACGATCCAAGGACCCTGAAG
CCAAGAAACGTAAACTTGCTAAttgaGACGATTTTGAAGTGGAAgatATT
GGTCTAACATTGCACCAAATTAAAGATGTACAAACCAAAATTATGGCTTG
GTTAACCACCCACCCTTCAGTGACGAAGAAATTTTTCGCAGAGGAGGTAC
TTCAAAGAGGGGCTGGTACCTTCTCTGACTATATGAAAACAACCATCGTG
CCAACCTCAGAAGCCGGGAAAAAGCACTGGACAACAATGGCTGCGTTTTT
GGATGATAAGTCGACACAAGATGCGCTATTAAACAAGAAAGCCTCGTGCG
ATCGTGaGAAATCGGGACACAGTGGTTTGAAAACACAGTCGTCGCCGAGG
GTTTCTTCGTTCTCCAGCCAACAGAAGGCAATCCTGAATGGCTATTATAA
AGAACACTGTTTCATCGATAAAGATGAAACCAAAGAGTTAGCTCAAAGAA
CAAAACTCACCTCAAAACAGATTAATACATGGTTCAACAACCGACGATCC
AAGGACCCTGAAGCCAAGAAACGTAAACTTGCTAAttgaGACGATTTTGA
AGTGGAAgatATTGGTCTAACATTGCACCAAATTAAAGATGTACAAACCA
AAATTATGGCTTGGTTAACCACCCACCCTTCAGTGACGAAGAAATTTTTC
GCAGAGGAGGTACTTCAAAGAGGGGCTGGTACCTTCTCTGACTATATGAA
AACAACCATCGTGCCAACCTCAGAAGCCGGGAAAAAGCACTGGACAACAA
TGGCTGCGTTTTTGGATGATAAGTCGACACAAGATGCGCTATTAAACAAG
AAAGCCTCGTGCGATCGTGaGAAATCGGGACACAGTGGTTTGAAAACACA
GTCGTCGCCGAGGGTTTCTTCGTTCTCCAGCCAACAGAAGGCAATCCTGA
ATGGCTATTATAAAGAACACTGTTTCATCGATAAAGATGAAACCAAAGAG
TTAGCTCAAAGAACAAAACTCACCTCAAAACAGATTAATACATGGTTCAA
CAACCGACGATCCAAGGACCCTGAAGCCAAGAAACGTAAACTTGCTAAtt
ga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00026841-exon-sc0000591-1491911889:173185..173206 | TCONS_00026841-exon-sc0000591-1491911889:173185..173206 | Clytia hemisphaerica | exon |
| TCONS_00026841-exon-sc0000591-1510915933:173185..173206 | TCONS_00026841-exon-sc0000591-1510915933:173185..173206 | Clytia hemisphaerica | exon |
| TCONS_00026841-exon-sc0000591-1575043694:173185..173206 | TCONS_00026841-exon-sc0000591-1575043694:173185..173206 | Clytia hemisphaerica | exon |
| TCONS_00026841-exon-sc0000591-1491911889:173660..173918 | TCONS_00026841-exon-sc0000591-1491911889:173660..173918 | Clytia hemisphaerica | exon |
| TCONS_00026841-exon-sc0000591-1510915933:173660..173918 | TCONS_00026841-exon-sc0000591-1510915933:173660..173918 | Clytia hemisphaerica | exon |
| TCONS_00026841-exon-sc0000591-1575043694:173660..173918 | TCONS_00026841-exon-sc0000591-1575043694:173660..173918 | Clytia hemisphaerica | exon |
| TCONS_00026841-exon-sc0000591-1491911889:174118..174281 | TCONS_00026841-exon-sc0000591-1491911889:174118..174281 | Clytia hemisphaerica | exon |
| TCONS_00026841-exon-sc0000591-1510915933:174118..174281 | TCONS_00026841-exon-sc0000591-1510915933:174118..174281 | Clytia hemisphaerica | exon |
| TCONS_00026841-exon-sc0000591-1575043694:174118..174281 | TCONS_00026841-exon-sc0000591-1575043694:174118..174281 | Clytia hemisphaerica | exon |
| TCONS_00026841-exon-sc0000591-1491911889:174743..174840 | TCONS_00026841-exon-sc0000591-1491911889:174743..174840 | Clytia hemisphaerica | exon |
| TCONS_00026841-exon-sc0000591-1510915933:174743..174840 | TCONS_00026841-exon-sc0000591-1510915933:174743..174840 | Clytia hemisphaerica | exon |
| TCONS_00026841-exon-sc0000591-1575043694:174743..174840 | TCONS_00026841-exon-sc0000591-1575043694:174743..174840 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000591 | supercontig | sc0000591:173185..174840 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003677 |
DNA binding |
Blast
The following BLAST results are available for this feature:
|
