TCONS_00026776 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026776
Unique NameTCONS_00026776
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1090

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026776 ID=TCONS_00026776|Name=TCONS_00026776|organism=Clytia hemisphaerica|type=transcript|length=1090bp
CTACATTCAAAACGAAAGACAAAAACGCAAGACCTTTTATAAATAACTGG
AAAAATGCGGTTTTCTCGTTTTCTTTCGATTGCTTTTGTCGTTTTCACGT
TGTCATCAAAAACACTTGCACACTATGTATGCGGTGTAAACAACGGACGG
GAAGGACCTTCAGAAAATAGCACTCCAAACATTCCACAAGCGAGAATCAT
TGGCGGTGAAAATGCACAACTTGGATCTTGGCCTTGGATGGTATCTTTAA
GACCAGTCGGCCAACCTGGCAATCACGTTTGTGGTGGAGTCCTTATTCAT
CCGAAGTGGGTGCTCACTGCCGCTCATTGTATGTTAAGGGCTCCAATTGA
AAGTGTAGTACTAGgggAGAAtgatttttctgtaaaagagGGCAAAGAAC
AACAAATCCGAGTCATTCGATCCATTACCCATCCAAAGTATGACGAACCT
TCATCAAACAATGACATtatgttgttgaaattgaaacacCCTGCTCGAAT
CACAAAAAATGTTCGACCAATTTGTTTACCTccgagaaaattcaaaaaaa
accgttttgaTGGTGATGAATGTGTTATTACGGGATGGGGAGTTAACGGA
ATCATCCCTCAAGGATTCACTAATCCTACGattcttcaagaagcaaaagt
caaagTTCTGACGAAGAAAACGTGCAAGAAAGCTTGGTTTTTCAGAGAAA
TTACCAGAAATATGGTCTGCGCTGTTGGTGAAACTACAAGAGCCTGCTTT
GGTGACTCTGGTGGTCCATTGAAATGTAAATCCAAAGGACATTGGTATCT
ATGGGGTCTTACCAGTTTCGGTCCAAACGATTGTCAAGGAAGACCCCCGG
TTTTCACTTTTGTTCCCCAATATCTTAGATGGATTCGACGCGTTGTGAcg
tggtgattctggtgaaccTGTATTTTTGAATAACATTTTAAATCattgta
aaatttttgaactttcATGTTTTCTTTTGACTCTTTTATGCTCTGACTTA
TTTATGTGATATTGTTGGCAAATAAGAGCAAGATTTTACATGCTGCCACC
CAAAGACTCTTTCTTAAATCTTATGATGTTATGAAGTGAC
Run BLAST on NCBI

protein sequence of TCONS_00026776-protein

>TCONS_00026776-protein ID=TCONS_00026776-protein|Name=TCONS_00026776-protein|organism=Clytia hemisphaerica|type=polypeptide|length=283bp
MRFSRFLSIAFVVFTLSSKTLAHYVCGVNNGREGPSENSTPNIPQARIIG
GENAQLGSWPWMVSLRPVGQPGNHVCGGVLIHPKWVLTAAHCMLRAPIES
VVLGENDFSVKEGKEQQIRVIRSITHPKYDEPSSNNDIMLLKLKHPARIT
KNVRPICLPPRKFKKNRFDGDECVITGWGVNGIIPQGFTNPTILQEAKVK
VLTKKTCKKAWFFREITRNMVCAVGETTRACFGDSGGPLKCKSKGHWYLW
GLTSFGPNDCQGRPPVFTFVPQYLRWIRRVVTW
Run BLAST on NCBI

transcript from alignment at sc0000587:211516..214763+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026776 ID=TCONS_00026776|Name=TCONS_00026776|organism=Clytia hemisphaerica|type=transcript|length=3248bp|location=Sequence derived from alignment at sc0000587:211516..214763+ (Clytia hemisphaerica)
CTACATTCAAAACGAAAGACAAAAACGCAAGACCTTTTATAAATAACTGG
AAAAATGCGGTTTTCTCGTTTTCTTTCGATTGCTTTTGTCGTTTTCACGT
TGTCATCAAAAACACTTGGTAGGTTTATTTTCATATTAAGCGATTCCACT
ACTTCACTTTGCAGTTATCCGTGCAACATGTTTACCTCGAAGCATAGTGA
TGGTCGATTTTTGATGGAATCGAAcccaaaattttccaataatAGTCCTT
AGGGTTCTTTAACTGTATAGACAATGAATATCCTTGGATCAAAGGTAAAA
AGATGTTCTTTCAATTCGTAACTTTAgttgtttttcaaaagtttatcCTT
AAAATCAAAATGTATTATCTGTGTTATCTTGTGATTGGTATTTTGATGTT
CACTACCCTCTATCTACTCGAAAGGCAATATGGACAAAATGCTAATAGTT
ACTTTTTCCAAGGCGTATCCACGAAGTTGAaatgttctgtaaattacact
tTCTTACAGCACACTATGTATGCGGTGTAAACAACGGACGGGAAGGACCT
TCAGAAAATAGCACTCCAAACATTCCACAAGCGAGAATCATTGGCGGTGA
AAATGCACAACTTGGATCTTGGCCTTGGATGGTATGTatgtaatacacct
tttcgatcgtTGTTGCGCGGTCAGGcgccttatcggggaaaacttcgtcg
gggaaaagtgggtgtacggtttttttctggaaaagcccactCCTCGTCTC
AAACCACTCTAGttataatatctttttttttgagtTATTGTCTCTCACTG
GCAAGCCCAGTTTTAAATCTTCAATGTGAGTCTCGTATTGTCATCAATCG
ATAACATTAAGATCTGGGATCCGCGGTTTTACGGTTGGTTTTTCACATCC
ATCAGAAAATGACCATAGGGTTTTCTTATCATGCATAAATGATCACGTAT
TTTTCAGGTATCTTTAAGACCAGTCGGCCAACCTGGCAATCACGTTTGTG
GTGGAGTCCTTATTCATCCGAAGTGGGTGCTCACTGCCGCTCATTGTATG
TTAAGGGCTCCAATTGAAAGTGTAGTACTAGGTAACTATTTTTTCTATCC
CAACAAatttctttcgatttcgatttctCTCCCAAATTTGGGGTAGCCTG
TTTCACTTTTCTTAGAAAGgtgcaaaaaaatcaatgattGTATTAATCTC
TAGCTATTCAAATCATTTTAATATTACTTCCGTCTTTTAACCCTTtaaag
tgccacggtcatttttttccaaactttttaaagaaagtcactagttcaaa
ctttaaaggcttatatctccggatctagaaggagttagaagcttgtTCAT
AGCTCGCTGGACAGCTTAGAGTCTGCGTGGACCTGTCTTGCGGGCCTGCC
TGAATAATAGAaaagtgcccagtggtaaaacttcaaactaattcactgga
agacagaatcaagtaaagcagggccaaatttggaggttcttatatcactc
gttgaccaaaaatggtcagaaaatgatcaaaatcttaaaaaagtcaaact
tttgcattcttttgactttttggcttaaaatctcgctagaaagactcact
tttgatttttctttgcttgaccataaagcaCAAttcaattcctacgagtt
ataccaaaaatgacgatttctaactcaaactgggcattacctacatagcc
catgtctgggTACGACATTGGCACTGAAAGGGTTAATTAAAGGCCATTAA
TTAACTCTATAGCTTCATTTTGCTTTAAAGCATTTCGTATTCACTTACCT
TTTTAATCGTTGTCACTTATACCTTTTCTACCCCAGCCTTATCTTGTATA
ttgcttttaatttttcaattttcaggggAGAAtgatttttctgtaaaaga
gGGCAAAGAACAACAAATCCGAGTCATTCGATCCATTACCCATCCAAAGT
ATGACGAACCTTCATCAAACAATGACATtatgttgttgaaattgaaacac
CCTGCTCGAATCACAAAAAATGTTCGACCAATTTGTTTACCTccgagaaa
attcaaaaaaaaccgttttgaTGGTGATGAATGTGTTATTACGGGATGGG
GAGTTAACGGAATCATCCCTCAAGGATTCACTAATCCTACGGTAAGAAAT
CCTGAAACATATTCTGTTATTTTAGATTCCTTTACATCTTTAtccagtgc
cgtagcaactgagggggggggggggggggggggggNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNCctaactcaaaatttccataACTCATAATCAG
ACTGCACAGTAActtcaatcaattttttcaattttcagattcttcaagaa
gcaaaagtcaaagTTCTGACGAAGAAAACGTGCAAGAAAGCTTGGTTTTT
CAGAGAAATTACCAGAAATATGGTCTGCGCTGTTGGTGAAACTACAAGAG
CCTGCTTTGGTGACTCTGGTGGTCCATTGAAATGTAAATCCAAAGGACAT
TGGTATCTATGGGGTCTTACCAGTTTCGGTCCAAACGATTGTCAAGGAAG
ACCCCCGGTTTTCACTTTTGTTCCCCAATATCTTAGATGGATTCGACGCG
TTGTGAcgtggtgattctggtgaaccTGTATTTTTGAATAACATTTTAAA
TCattgtaaaatttttgaactttcATGTTTTCTTTTGACTCTTTTATGCT
CTGACTTATTTATGTGATATTGTTGGCAAATAAGAGCAAGATTTTACATG
CTGCCACCCAAAGACTCTTTCTTAAATCTTATGATGTTATGAAGTGAC

Coding sequence (CDS) from alignment at sc0000587:211516..214763+

>TCONS_00026776 ID=TCONS_00026776|Name=TCONS_00026776|organism=Clytia hemisphaerica|type=CDS|length=4260bp|location=Sequence derived from alignment at sc0000587:211516..214763+ (Clytia hemisphaerica)
ATGCGGTTTTCTCGTTTTCTTTCGATTGCTTTTGTCGTTTTCACGTTGTC
ATCAAAAACACTTGCACACTATGTATGCGGTGTAAACAACGGACGGGAAG
GACCTTCAGAAAATAGCACTCCAAACATTCCACAAGCGAGAATCATTGGC
GGTGAAAATGCACAACTTGGATCTTGGCCTTGGATGGTATCTTTAAGACC
AGTCGGCCAACCTGGCAATCACGTTTGTGGTGGAGTCCTTATTCATCCGA
AGTGGGTGCTCACTGCCGCTCATTGTATGTTAAGGGCTCCAATTGAAAGT
GTAGTACTAGgggAGAAtgatttttctgtaaaagagGGCAAAGAACAACA
AATCCGAGTCATTCGATCCATTACCCATCCAAAGTATGACGAACCTTCAT
CAAACAATGACATtatgttgttgaaattgaaacacCCTGCTCGAATCACA
AAAAATGTTCGACCAATTTGTTTACCTccgagaaaattcaaaaaaaaccg
ttttgaTGGTGATGAATGTGTTATTACGGGATGGGGAGTTAACGGAATCA
TCCCTCAAGGATTCACTAATCCTACGattcttcaagaagcaaaagtcaaa
gTTCTGACGAAGAAAACGTGCAAGAAAGCTTGGTTTTTCAGAGAAATTAC
CAGAAATATGGTCTGCGCTGTTGGTGAAACTACAAGAGCCTGCTTTGGTG
ACTCTGGTGGTCCATTGAAATGTAAATCCAAAGGACATTGGTATCTATGG
GGTCTTACCAGTTTCGGTCCAAACGATTGTCAAGGAAGACCCCCGGTTTT
CACTTTTGTTCCCCAATATCTTAGATGGATTCGACGCGTTGTGAcgtggt
gaATGCGGTTTTCTCGTTTTCTTTCGATTGCTTTTGTCGTTTTCACGTTG
TCATCAAAAACACTTGCACACTATGTATGCGGTGTAAACAACGGACGGGA
AGGACCTTCAGAAAATAGCACTCCAAACATTCCACAAGCGAGAATCATTG
GCGGTGAAAATGCACAACTTGGATCTTGGCCTTGGATGGTATCTTTAAGA
CCAGTCGGCCAACCTGGCAATCACGTTTGTGGTGGAGTCCTTATTCATCC
GAAGTGGGTGCTCACTGCCGCTCATTGTATGTTAAGGGCTCCAATTGAAA
GTGTAGTACTAGgggAGAAtgatttttctgtaaaagagGGCAAAGAACAA
CAAATCCGAGTCATTCGATCCATTACCCATCCAAAGTATGACGAACCTTC
ATCAAACAATGACATtatgttgttgaaattgaaacacCCTGCTCGAATCA
CAAAAAATGTTCGACCAATTTGTTTACCTccgagaaaattcaaaaaaaac
cgttttgaTGGTGATGAATGTGTTATTACGGGATGGGGAGTTAACGGAAT
CATCCCTCAAGGATTCACTAATCCTACGattcttcaagaagcaaaagtca
aagTTCTGACGAAGAAAACGTGCAAGAAAGCTTGGTTTTTCAGAGAAATT
ACCAGAAATATGGTCTGCGCTGTTGGTGAAACTACAAGAGCCTGCTTTGG
TGACTCTGGTGGTCCATTGAAATGTAAATCCAAAGGACATTGGTATCTAT
GGGGTCTTACCAGTTTCGGTCCAAACGATTGTCAAGGAAGACCCCCGGTT
TTCACTTTTGTTCCCCAATATCTTAGATGGATTCGACGCGTTGTGAcgtg
gtgaATGCGGTTTTCTCGTTTTCTTTCGATTGCTTTTGTCGTTTTCACGT
TGTCATCAAAAACACTTGCACACTATGTATGCGGTGTAAACAACGGACGG
GAAGGACCTTCAGAAAATAGCACTCCAAACATTCCACAAGCGAGAATCAT
TGGCGGTGAAAATGCACAACTTGGATCTTGGCCTTGGATGGTATCTTTAA
GACCAGTCGGCCAACCTGGCAATCACGTTTGTGGTGGAGTCCTTATTCAT
CCGAAGTGGGTGCTCACTGCCGCTCATTGTATGTTAAGGGCTCCAATTGA
AAGTGTAGTACTAGgggAGAAtgatttttctgtaaaagagGGCAAAGAAC
AACAAATCCGAGTCATTCGATCCATTACCCATCCAAAGTATGACGAACCT
TCATCAAACAATGACATtatgttgttgaaattgaaacacCCTGCTCGAAT
CACAAAAAATGTTCGACCAATTTGTTTACCTccgagaaaattcaaaaaaa
accgttttgaTGGTGATGAATGTGTTATTACGGGATGGGGAGTTAACGGA
ATCATCCCTCAAGGATTCACTAATCCTACGattcttcaagaagcaaaagt
caaagTTCTGACGAAGAAAACGTGCAAGAAAGCTTGGTTTTTCAGAGAAA
TTACCAGAAATATGGTCTGCGCTGTTGGTGAAACTACAAGAGCCTGCTTT
GGTGACTCTGGTGGTCCATTGAAATGTAAATCCAAAGGACATTGGTATCT
ATGGGGTCTTACCAGTTTCGGTCCAAACGATTGTCAAGGAAGACCCCCGG
TTTTCACTTTTGTTCCCCAATATCTTAGATGGATTCGACGCGTTGTGAcg
tggtgaATGCGGTTTTCTCGTTTTCTTTCGATTGCTTTTGTCGTTTTCAC
GTTGTCATCAAAAACACTTGCACACTATGTATGCGGTGTAAACAACGGAC
GGGAAGGACCTTCAGAAAATAGCACTCCAAACATTCCACAAGCGAGAATC
ATTGGCGGTGAAAATGCACAACTTGGATCTTGGCCTTGGATGGTATCTTT
AAGACCAGTCGGCCAACCTGGCAATCACGTTTGTGGTGGAGTCCTTATTC
ATCCGAAGTGGGTGCTCACTGCCGCTCATTGTATGTTAAGGGCTCCAATT
GAAAGTGTAGTACTAGgggAGAAtgatttttctgtaaaagagGGCAAAGA
ACAACAAATCCGAGTCATTCGATCCATTACCCATCCAAAGTATGACGAAC
CTTCATCAAACAATGACATtatgttgttgaaattgaaacacCCTGCTCGA
ATCACAAAAAATGTTCGACCAATTTGTTTACCTccgagaaaattcaaaaa
aaaccgttttgaTGGTGATGAATGTGTTATTACGGGATGGGGAGTTAACG
GAATCATCCCTCAAGGATTCACTAATCCTACGattcttcaagaagcaaaa
gtcaaagTTCTGACGAAGAAAACGTGCAAGAAAGCTTGGTTTTTCAGAGA
AATTACCAGAAATATGGTCTGCGCTGTTGGTGAAACTACAAGAGCCTGCT
TTGGTGACTCTGGTGGTCCATTGAAATGTAAATCCAAAGGACATTGGTAT
CTATGGGGTCTTACCAGTTTCGGTCCAAACGATTGTCAAGGAAGACCCCC
GGTTTTCACTTTTGTTCCCCAATATCTTAGATGGATTCGACGCGTTGTGA
cgtggtgaATGCGGTTTTCTCGTTTTCTTTCGATTGCTTTTGTCGTTTTC
ACGTTGTCATCAAAAACACTTGCACACTATGTATGCGGTGTAAACAACGG
ACGGGAAGGACCTTCAGAAAATAGCACTCCAAACATTCCACAAGCGAGAA
TCATTGGCGGTGAAAATGCACAACTTGGATCTTGGCCTTGGATGGTATCT
TTAAGACCAGTCGGCCAACCTGGCAATCACGTTTGTGGTGGAGTCCTTAT
TCATCCGAAGTGGGTGCTCACTGCCGCTCATTGTATGTTAAGGGCTCCAA
TTGAAAGTGTAGTACTAGgggAGAAtgatttttctgtaaaagagGGCAAA
GAACAACAAATCCGAGTCATTCGATCCATTACCCATCCAAAGTATGACGA
ACCTTCATCAAACAATGACATtatgttgttgaaattgaaacacCCTGCTC
GAATCACAAAAAATGTTCGACCAATTTGTTTACCTccgagaaaattcaaa
aaaaaccgttttgaTGGTGATGAATGTGTTATTACGGGATGGGGAGTTAA
CGGAATCATCCCTCAAGGATTCACTAATCCTACGattcttcaagaagcaa
aagtcaaagTTCTGACGAAGAAAACGTGCAAGAAAGCTTGGTTTTTCAGA
GAAATTACCAGAAATATGGTCTGCGCTGTTGGTGAAACTACAAGAGCCTG
CTTTGGTGACTCTGGTGGTCCATTGAAATGTAAATCCAAAGGACATTGGT
ATCTATGGGGTCTTACCAGTTTCGGTCCAAACGATTGTCAAGGAAGACCC
CCGGTTTTCACTTTTGTTCCCCAATATCTTAGATGGATTCGACGCGTTGT
GAcgtggtga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015043XLOC_015043Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026776-exon-sc0000587-1491911889:211516..211633TCONS_00026776-exon-sc0000587-1491911889:211516..211633Clytia hemisphaericaexon
TCONS_00026776-exon-sc0000587-1510915933:211516..211633TCONS_00026776-exon-sc0000587-1510915933:211516..211633Clytia hemisphaericaexon
TCONS_00026776-exon-sc0000587-1575043694:211516..211633TCONS_00026776-exon-sc0000587-1575043694:211516..211633Clytia hemisphaericaexon
TCONS_00026776-exon-sc0000587-1491911889:212025..212146TCONS_00026776-exon-sc0000587-1491911889:212025..212146Clytia hemisphaericaexon
TCONS_00026776-exon-sc0000587-1510915933:212025..212146TCONS_00026776-exon-sc0000587-1510915933:212025..212146Clytia hemisphaericaexon
TCONS_00026776-exon-sc0000587-1575043694:212025..212146TCONS_00026776-exon-sc0000587-1575043694:212025..212146Clytia hemisphaericaexon
TCONS_00026776-exon-sc0000587-1491911889:212473..212596TCONS_00026776-exon-sc0000587-1491911889:212473..212596Clytia hemisphaericaexon
TCONS_00026776-exon-sc0000587-1510915933:212473..212596TCONS_00026776-exon-sc0000587-1510915933:212473..212596Clytia hemisphaericaexon
TCONS_00026776-exon-sc0000587-1575043694:212473..212596TCONS_00026776-exon-sc0000587-1575043694:212473..212596Clytia hemisphaericaexon
TCONS_00026776-exon-sc0000587-1491911889:213391..213656TCONS_00026776-exon-sc0000587-1491911889:213391..213656Clytia hemisphaericaexon
TCONS_00026776-exon-sc0000587-1510915933:213391..213656TCONS_00026776-exon-sc0000587-1510915933:213391..213656Clytia hemisphaericaexon
TCONS_00026776-exon-sc0000587-1575043694:213391..213656TCONS_00026776-exon-sc0000587-1575043694:213391..213656Clytia hemisphaericaexon
TCONS_00026776-exon-sc0000587-1491911889:214304..214763TCONS_00026776-exon-sc0000587-1491911889:214304..214763Clytia hemisphaericaexon
TCONS_00026776-exon-sc0000587-1510915933:214304..214763TCONS_00026776-exon-sc0000587-1510915933:214304..214763Clytia hemisphaericaexon
TCONS_00026776-exon-sc0000587-1575043694:214304..214763TCONS_00026776-exon-sc0000587-1575043694:214304..214763Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026776-proteinTCONS_00026776-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000587supercontigsc0000587:211516..214763 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.201349	0.314156	0.0911912	0.0892163	0	0	0.258866	0.0484695	0.135739	0.126101	0.407988	0.0804585	0.374951	11.0976	0.411598	0.171775	0.362765	0.495763	0.214039	0.179181	0.0778704	0.170921	0.230863	0.377799	0.43236	0.270109	0.607398	0.530371	0.357571	0.227693
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001314Peptidase_S1A
IPR001254Trypsin_dom
IPR018114TRYPSIN_HIS
IPR009003Peptidase_S1_PA
Vocabulary: Molecular Function
TermDefinition
GO:0004252serine-type endopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0004252 serine-type endopeptidase activity
Blast
[Close]
BLAST of TCONS_00026776 vs. Swiss-Prot (Human)
Match: CTRL (Chymotrypsin-like protease CTRL-1 OS=Homo sapiens GN=CTRL PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 4.233e-49
Identity = 100/239 (41.84%), Postives = 137/239 (57.32%), Query Frame = 1 
Query:  193 RIIGGENAQLGSWPWMVSLRPVGQPGNHVCGGVLIHPKWVLTAAHCMLRAPIESVVLGENDFSVKEGKEQQIRVIRSITHPKYDEPSSNNDIMLLKLKHPARITKNVRPICLPPRKFKKNRFDGDECVITGWG-VNGIIPQGFTNPTILQEAXXXXXXXXXXXXAWFFREITRNMVCAVGETTRACFGDSGGPLKCKSKGHWYLWGLTSFGPNDCQGR-PPVFTFVPQYLRWIRRVVTW 903
            RI+ GENA LGSWPW VSL+     G H CGG LI   WV+TAAHC +      VVLGE D S      Q + V R+ITHP ++  + NND+ LLKL  PA+ T  + P+CL      +   +G  CV TGWG ++G+   G   P  LQ+  + ++T   C++ W    IT +M+CA G    +C GDSGGPL C+    W L G+ S+G  +C  R P V+T V ++  WI +V+ +
Sbjct:   33 RIVNGENAVLGSWPWQVSLQD--SSGFHFCGGSLISQSWVVTAAHCNVSPGRHFVVLGEYDRSSNAEPLQVLSVSRAITHPSWNSTTMNNDVTLLKLASPAQYTTRISPVCLASS--NEALTEGLTCVTTGWGRLSGV---GNVTPAHLQQVALPLVTVNQCRQYW-GSSITDSMICAGGAGASSCQGDSGGPLVCQKGNTWVLIGIVSWGTKNCNVRAPAVYTRVSKFSTWINQVIAY 263
The following BLAST results are available for this feature:
BLAST of TCONS_00026776 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CTRL4.233e-4941.84Chymotrypsin-like protease CTRL-1 OS=Homo sapiens ... [more]
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