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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026536 ID=TCONS_00026536|Name=TCONS_00026536|organism=Clytia hemisphaerica|type=transcript|length=2620bp
GTAGCCGTTTAACTTTCGATATTCCATTCCTGACCAAATTAGCACAACAA
ACGTTACTTTTCATGAgatcaatgacgtcattttgacagcgaaaaaaaga
ctaaaaaatCTGAAGGCTTTTAACATTATTTTTCTGATTTCAAAATGACG
CCATGAACCGCATAAATTGCCGAATAGCTCAGTTAAGTATTTCAAGAAAT
TCTTCGACCTCCAACCTCGGAAATATTCCGATTCAAAGACTTTTAGATAA
AAGGATCGTTTTTTAATGATTTCGTCTCAGAGATAGCGGGGCCAGGCACA
CGGCACTATTTGACTTACAAACCCAGTGTGTGGAATTTTCACCAagattc
gaatctttctcttatTCAACGGGAAGTGACCTATCTTATGAGATGTCGGA
AGAAAAAGCAGCATTAATTCTATCACGTGACCATTTACCGTAACTTCACA
GAAATGTATTTCCTTCATCAACTACAAAATCGTTCAAATGGTTTTACCGA
ACTCGGTTAATTTCCTCGCAGTGCTTCGCAGCGTAGGGTGCGACTTAATT
GAGAAGTTTTGGCGATTTACATAAACGTATTTTTAGGGATAACATTCCGC
GGGGACCAAATTGAGGGATAAAATTGCAACCATGCATACTGGTTGTTGAC
TGGTTTATCCAGGAGAGGTTTTCGaagttttaataaaaaagattttcgtt
GTCCCTATCCTTTGTTAATTAACTGTTTCCCTTTCAAATGTTTAggcaaa
aaatacattttttcgcaaaataaattcaacagtgacagttgacttttgaa
atcaatacactcaaaacttttttgacgCAAAAATAACCGCTTTTAAAACC
ACTTACAGACTCATTTGCGAAAAATAAATTCACACTAAATTCTTCGAAAC
TCCAACTTCAGAATGATCAAGGGATCTTGCGATTTTTTGACTCGAAATTC
GATACGATTAAAATGAAAGTTCTGGGTTTTAAACTAGATTTTCACAATAA
TGTCCTCGTAGTTTTCAGGGGAAATTTAAAAGGCGTTAGTTTGAATTTGA
CCGACGGTAAATTTTTGCTGTAGCCTTAGATTGatagaaatataaaattt
tgaataagtttCCTTCAATTGAGCTCAAAATCGAGCTTTGAAAATAATAA
TTCGTTTGGTATTAAAAGATGCGACAAAAAGGATAAGAATGACAAATTGG
TAATGATTACAAAAAGAGAACGCAATTTCCAATAATCCCGTGATAGCATt
tcaatcacaaaaaaaatttgtgtttttgaagTAGTTAATTTTGTTTGGAA
AGGGTATTTTTTTTAatactgttgaatttatttgCGATGGCTAATCACTA
CGGCATGAAAGCTTAAACTTCTCatttaatgttttgaaattaagGTGAAT
TGCACCGTGTTGACGTTTGCACATTCAATACCCTGACGAAGAACGCGCAC
TTTTGATGAATTAGCAAAATGTACAGTCAACTCTCGTTCGAAAGGAGGAT
CAAAATTATTTGAAGTACATAAAATTGTATAACGCATTCCACAAAGGTTT
TTCCAAGTAAGCTCGAATCATAGAAGCtatcgaattagcgagagttcacT
TGTAGTTGTACAGAGCAGCGGTTTAAGGGTTAGTCACAGGGAAGGtcaaa
tgatatttttaaattaaagtctgtccaaatataattggcagtggaaacaa
gaatgcctgcaACTTTTGATAAACAAATATAAttattgaaatttcttttg
cttgttttagagaatcaaaagcgctatatttgaatgattttctaaattta
gtGGAATGATCTTCTACCATAAACCTTTTTTTAAGGACAAAAAATAAAGG
AGCTTGAAATGACTAAGTTTCGTTTTCTGAAAACTTTGCCATTGATAATC
CTGCCACAactttgtttcaacgttcatctagcgTCAATAATGTCCATAAA
ACGTAAAGATGAACGTTGACTTAAAACAAAGTTCTGTGCAGCTATTCCCT
CCCGGGTATCTAATTAATATGAGTCCcccactaattaatttttcgaaaac
tttccattcttattccaactcccccccccccttattaatttttagcaaaa
tgttTTGGAGAATTTCCTTATTTGTCTTAANGCTTATtaatttttagcaa
aatgttTTGGAGAATTTCCTtatttgtcttaattctgctgtcttggcctc
cttttcaaaaattttcaaactagGACATTGAGTTTTGAGAATTTCTCTAC
CCATCCCGCTTATTCCGAACCCCCCcatttattaggtacccgagagtagg
aaAAACTTTGATTGGACTTGTAAAAATCGGCCATAATTCTATCCACCAAA
ACAAATTCTCACTAATTCGAACTTGAATAGGAGTCTGTTCGAGTTGTGCG
AATTATGAAGATTTACGAACGTCAGATTCTAGCATCAGTCCACAAGCTAA
AGAAAATTGTAACTGATTTACGAGTAACcgatgatttttctaaaaaagaa
cgGGAAACCACCAAAGAATTGCATAGAAACGCAAAAGAGAAGACAAAGTT
ACAAAAGGATGGCAGTCAAATaaaggttagaggaagtccTCGGACTAGAC
TCTATTTCAAGAAGATCTNN Run BLAST on NCBI transcript from alignment at sc0000574:12166..14785 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00026536 ID=TCONS_00026536|Name=TCONS_00026536|organism=Clytia hemisphaerica|type=transcript|length=2620bp|location=Sequence derived from alignment at sc0000574:12166..14785 (Clytia hemisphaerica)
NNAGATCTTCTTGAAATAGAGTCTAGTCCGAggacttcctctaacctttA
TTTGACTGCCATCCTTTTGTAACTTTGTCTTCTCTTTTGCGTTTCTATGC
AATTCTTTGGTGGTTTCCcgttcttttttagaaaaatcatcgGTTACTCG
TAAATCAGTTACAATTTTCTTTAGCTTGTGGACTGATGCTAGAATCTGAC
GTTCGTAAATCTTCATAATTCGCACAACTCGAACAGACTCCTATTCAAGT
TCGAATTAGTGAGAATTTGTTTTGGTGGATAGAATTATGGCCGATTTTTA
CAAGTCCAATCAAAGTTTttcctactctcgggtacctaataaatgGGGGG
GTTCGGAATAAGCGGGATGGGTAGAGAAATTCTCAAAACTCAATGTCcta
gtttgaaaatttttgaaaaggaggccaagacagcagaattaagacaaata
AGGAAATTCTCCAAaacattttgctaaaaattaATAAGCNTTAAGACAAA
TAAGGAAATTCTCCAAaacattttgctaaaaattaataaggggggggggg
agttggaataagaatggaaagttttcgaaaaattaattagtgggGGACTC
ATATTAATTAGATACCCGGGAGGGAATAGCTGCACAGAACTTTGTTTTAA
GTCAACGTTCATCTTTACGTTTTATGGACATTATTGAcgctagatgaacg
ttgaaacaaagtTGTGGCAGGATTATCAATGGCAAAGTTTTCAGAAAACG
AAACTTAGTCATTTCAAGCTCCTTTATTTTTTGTCCTTAAAAAAAGGTTT
ATGGTAGAAGATCATTCCactaaatttagaaaatcattcaaatatagcgc
ttttgattctctaaaacaagcaaaagaaatttcaataaTTATATTTGTTT
ATCAAAAGTtgcaggcattcttgtttccactgccaattatatttggacag
actttaatttaaaaatatcatttgaCCTTCCCTGTGACTAACCCTTAAAC
CGCTGCTCTGTACAACTACAAgtgaactctcgctaattcgataGCTTCTA
TGATTCGAGCTTACTTGGAAAAACCTTTGTGGAATGCGTTATACAATTTT
ATGTACTTCAAATAATTTTGATCCTCCTTTCGAACGAGAGTTGACTGTAC
ATTTTGCTAATTCATCAAAAGTGCGCGTTCTTCGTCAGGGTATTGAATGT
GCAAACGTCAACACGGTGCAATTCACcttaatttcaaaacattaaatGAG
AAGTTTAAGCTTTCATGCCGTAGTGATTAGCCATCGcaaataaattcaac
agtatTAAAAAAAATACCCTTTCCAAACAAAATTAACTActtcaaaaaca
caaattttttttgtgattgaaATGCTATCACGGGATTATTGGAAATTGCG
TTCTCTTTTTGTAATCATTACCAATTTGTCATTCTTATCCTTTTTGTCGC
ATCTTTTAATACCAAACGAATTATTATTTTCAAAGCTCGATTTTGAGCTC
AATTGAAGGaaacttattcaaaattttatatttctatCAATCTAAGGCTA
CAGCAAAAATTTACCGTCGGTCAAATTCAAACTAACGCCTTTTAAATTTC
CCCTGAAAACTACGAGGACATTATTGTGAAAATCTAGTTTAAAACCCAGA
ACTTTCATTTTAATCGTATCGAATTTCGAGTCAAAAAATCGCAAGATCCC
TTGATCATTCTGAAGTTGGAGTTTCGAAGAATTTAGTGTGAATTTATTTT
TCGCAAATGAGTCTGTAAGTGGTTTTAAAAGCGGTTATTTTTGcgtcaaa
aaagttttgagtgtattgatttcaaaagtcaactgtcactgttgaattta
ttttgcgaaaaaatgtattttttgccTAAACATTTGAAAGGGAAACAGTT
AATTAACAAAGGATAGGGACaacgaaaatcttttttattaaaacttCGAA
AACCTCTCCTGGATAAACCAGTCAACAACCAGTATGCATGGTTGCAATTT
TATCCCTCAATTTGGTCCCCGCGGAATGTTATCCCTAAAAATACGTTTAT
GTAAATCGCCAAAACTTCTCAATTAAGTCGCACCCTACGCTGCGAAGCAC
TGCGAGGAAATTAACCGAGTTCGGTAAAACCATTTGAACGATTTTGTAGT
TGATGAAGGAAATACATTTCTGTGAAGTTACGGTAAATGGTCACGTGATA
GAATTAATGCTGCTTTTTCTTCCGACATCTCATAAGATAGGTCACTTCCC
GTTGAataagagaaagattcgaatctTGGTGAAAATTCCACACACTGGGT
TTGTAAGTCAAATAGTGCCGTGTGCCTGGCCCCGCTATCTCTGAGACGAA
ATCATTAAAAAACGATCCTTTTATCTAAAAGTCTTTGAATCGGAATATTT
CCGAGGTTGGAGGTCGAAGAATTTCTTGAAATACTTAACTGAGCTATTCG
GCAATTTATGCGGTTCATGGCGTCATTTTGAAATCAGAAAAATAATGTTA
AAAGCCTTCAGattttttagtctttttttcgctgtcaaaatgacgtcatt
gatcTCATGAAAAGTAACGTTTGTTGTGCTAATTTGGTCAGGAATGGAAT
ATCGAAAGTTAAACGGCTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00026536-exon-sc0000574-1491911889:12166..14785 | TCONS_00026536-exon-sc0000574-1491911889:12166..14785 | Clytia hemisphaerica | exon |
| TCONS_00026536-exon-sc0000574-1510915933:12166..14785 | TCONS_00026536-exon-sc0000574-1510915933:12166..14785 | Clytia hemisphaerica | exon |
| TCONS_00026536-exon-sc0000574-1575043694:12166..14785 | TCONS_00026536-exon-sc0000574-1575043694:12166..14785 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000574 | supercontig | sc0000574:12166..14785 . |
Blast
The following BLAST results are available for this feature:
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