TCONS_00026535 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026535
Unique NameTCONS_00026535
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length539

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026535 ID=TCONS_00026535|Name=TCONS_00026535|organism=Clytia hemisphaerica|type=transcript|length=539bp
CTATCACAAAACTCGAATTTCCTGGcagtgaaaagtcaaaaagaagttCG
ATTTTAAGAAAAGTCCCTTTCAGGCCACAAATAATTATTTACACTGGTAA
AAACACTATTTGTGATTAATGGTTACAGTAAACTCTTTGAAAATATGTCT
TCTTTCACACAAATAAGGTTTGAATGCTTGGGACAAACTAAAACCACAAC
AAAATCCTGCTGAGTCAAAATGTAGGTTTGTTTGGGGTGCTTAAATTCTA
CACAAATCATTGGTTCGAAGGAAAAGGTAAACTATTCATTTCGAACTCTA
ATAANTGGGACAAACTAAAACCACAACAAAATCCTGCTGAGTCAAAATGT
AGGTTTGTTTGGGGTGCTTAAATTCTACACAAATCATTGGTTCGAAGGAA
AAGGTAAACTATTCATTTCGAACTCTAATAACTTAACCCATCAATATAGT
TTAATCAATAGGCAAAAAGAACTAAAGAATTGGTAACCAATATTAAAGAA
TTGATATCGAGACAACTTCATTTAACAATCACTCTTCNN
Run BLAST on NCBI

transcript from alignment at sc0000574:10201..10739

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026535 ID=TCONS_00026535|Name=TCONS_00026535|organism=Clytia hemisphaerica|type=transcript|length=539bp|location=Sequence derived from alignment at sc0000574:10201..10739 (Clytia hemisphaerica)
NNGAAGAGTGATTGTTAAATGAAGTTGTCTCGATATCAATTCTTTAATAT
TGGTTACCAATTCTTTAGTTCTTTTTGCCTATTGATTAAACTATATTGAT
GGGTTAAGTTATTAGAGTTCGAAATGAATAGTTTACCTTTTCCTTCGAAC
CAATGATTTGTGTAGAATTTAAGCACCCCAAACAAACCTACATTTTGACT
CAGCAGGATTTTGTTGTGGTTTTAGTTTGTCCCANTTATTAGAGTTCGAA
ATGAATAGTTTACCTTTTCCTTCGAACCAATGATTTGTGTAGAATTTAAG
CACCCCAAACAAACCTACATTTTGACTCAGCAGGATTTTGTTGTGGTTTT
AGTTTGTCCCAAGCATTCAAACCTTATTTGTGTGAAAGAAGACATATTTT
CAAAGAGTTTACTGTAACCATTAATCACAAATAGTGTTTTTACCAGTGTA
AATAATTATTTGTGGCCTGAAAGGGACTTTTCTTAAAATCGaacttcttt
ttgacttttcactgCCAGGAAATTCGAGTTTTGTGATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014922XLOC_014922Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026535-exon-sc0000574-1491911889:10201..10739TCONS_00026535-exon-sc0000574-1491911889:10201..10739Clytia hemisphaericaexon
TCONS_00026535-exon-sc0000574-1510915933:10201..10739TCONS_00026535-exon-sc0000574-1510915933:10201..10739Clytia hemisphaericaexon
TCONS_00026535-exon-sc0000574-1575043694:10201..10739TCONS_00026535-exon-sc0000574-1575043694:10201..10739Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000574supercontigsc0000574:10201..10739 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.912483	1.35091	0.136231	0.415813	1.90007	1.04853	1.26243	1.96922	0.18119	0.112217	0.10892	0.146805	0.359451	0	0.129471	0.198606	0	0.250376	0	0.11959	0.652419	1.63395	1.05152	1.01958	0	0.103016	0.651809	0	0.754529	0.758596
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00026535 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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