TCONS_00026531 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026531
Unique NameTCONS_00026531
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length571

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026531 ID=TCONS_00026531|Name=TCONS_00026531|organism=Clytia hemisphaerica|type=transcript|length=571bp
CTAATTTTGTATCGTTCGTTGTTTGGTGAGGTAAAATCTTATCTGTTTCT
TGCTTTGTCTTTGTATCGATCGAATTAACAAAGTCTATGATATTATTTTC
TAAGCTTATTTGTTGTAAATATGAAGTGTCTTCGTTATAGTCTGTGTTAA
TGTATTTCCAAATGTCCTCTACATCAAAATCTGTCGGCGTTTCTGATAAA
GTCTGTTCTTTAGTCGTGATTGATTTCTGAAGTTCCTGCATATCAATATG
TTTAGTTTCGTTGAGAAGGAGTTCTGATGAGAGCTGCAAGTCTTCGATGT
GAGGGAAGGCGGATATACTTTCAGGGGGCGTAGGCGGGGGTGTCAAATAT
TGATCCATCTCAATCATCAACGGAtcaaaatgagaattttcgagTGGTAG
CGACTCTTGCGGATATTCTTCCGATTTCATCCATGTTTCGTCGTTGTAAA
ATGAAGTGAAATCGAGAGATGTGAAATCCAAAATGGTAGGGAAATCTAAT
GACCAACCACTGTCGTTGTTTTTCATATTTGAATCCATTACGATTATAAC
AAAAAGAAGCATAACTGCTGA
Run BLAST on NCBI

transcript from alignment at sc0000574:198455..199411-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026531 ID=TCONS_00026531|Name=TCONS_00026531|organism=Clytia hemisphaerica|type=transcript|length=957bp|location=Sequence derived from alignment at sc0000574:198455..199411- (Clytia hemisphaerica)
CTAATTTTGTATCGTTCGTTGTTTGGTGAGGTAAAATCTTATCTGTTTCT
TGCTTTGTCTTTGTATCGATCGAATTAACAAAGTCTATGATATTATTTTC
TAAGCTTATTTGTTGTAAATATGAAGTGTCTTCGTTATAGTCTGTGTTAA
TGTATTTCCAAATGTCCTCTACATCAAAATCTGTCGGCGTTTCTGATAAA
GTCTGTTCTTTAGTCGTGATTGATTTCTGAAGTTCCTGCATATCAATATG
TTTAGTTTCGTTGAGAAGGAGTTCTGATGAGAGCTGCAAGTCTTCGATGT
GAGGGAAGGCGGATATACTTTCAGGGGGCGTAGGCGGGGGTGTCAAATAT
TGATCCATCTCAATCATCAACGGATCAAAATGAGAATTTTCGAGTGGTAG
CGACTCTTGCGGATATTCTTCCGATTTCATCCATGTTTCGTCGTTGTAAA
ATGAAGTGAAATCGAGAGATGTGAAATCCAAAATGGTAGGGAAATCTAAT
GACCAACCACTGTCGTTGTTTTTCATATTTGAATCCATTACGATTATAAC
AAAAAGAAGCGCTACAATAAGAAAAGCAGACAAAAAATTATATTTTGTGT
GTCCCAGCATATTTGAAACAAATGTCTAAACAATATTCGTTGATAATCGT
CAATAAGTAGAGGAAAAAGTGCACCCAATTTTTAAGCCAAACTATCTCAC
TACGTTACAAGTTAGTTCCTAGGGGTATCAATAATTAAAGCCTTGTTTTG
GCGTACAGAATTTTCTTCAGGGCCAGGAAAATCAATTAAACTGCAAACAA
TATCCAGGCAGCGAGGTATAATAATTATTACAGCTTGCCACCTCAGGTAG
TTGAAATCCGAAATTGTTTAAAATAAAATGTTCGGAAGCCAAAACTTTTA
TCCTTCCGCTAGAGATTTCTAGTAGACAAAACAAGCTACCTTAAAGATAA
CTGCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014918XLOC_014918Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026531-exon-sc0000574-1575043694:198852..199411TCONS_00026531-exon-sc0000574-1575043694:198852..199411Clytia hemisphaericaexon
TCONS_00026531-exon-sc0000574-1575043694:198455..198465TCONS_00026531-exon-sc0000574-1575043694:198455..198465Clytia hemisphaericaexon
TCONS_00026531-exon-sc0000574-1510915933:198852..199411TCONS_00026531-exon-sc0000574-1510915933:198852..199411Clytia hemisphaericaexon
TCONS_00026531-exon-sc0000574-1510915933:198455..198465TCONS_00026531-exon-sc0000574-1510915933:198455..198465Clytia hemisphaericaexon
TCONS_00026531-exon-sc0000574-1491911889:198852..199411TCONS_00026531-exon-sc0000574-1491911889:198852..199411Clytia hemisphaericaexon
TCONS_00026531-exon-sc0000574-1491911889:198455..198465TCONS_00026531-exon-sc0000574-1491911889:198455..198465Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000574supercontigsc0000574:198455..199411 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0261522	0.304251	0.127283	0.434252	0.802608	0	0.135298	1.54493	0.259781	1.6839	0.312328	0	0.669192	1.17536	1.12786	0.371723	0.884647	1.01716	0.523434	0.390318	0.482978	0.419334	1.75145	2.09008	3.42274	0.315394	1.25836	2.18607	17.0306	9.84661
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00026531 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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