TCONS_00026509 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026509
Unique NameTCONS_00026509
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2013

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026509 ID=TCONS_00026509|Name=TCONS_00026509|organism=Clytia hemisphaerica|type=transcript|length=2013bp
GTTTATTTAACCAATTGTTAACCTCCAATACACACGAGGTTTAACGTggt
tttaaaatattctttaaagattttataCGATTTTCCAACACGAAAGCATA
TAGTTAGAACCATTGGAACCATAATAAAATTACATTGCTGATTGCTTATA
TTGATGATATTAGAGTTACTCCGTCACTGGAATAAATACATAGACGTagt
atttattatttaattaaaCTGACACGAACACAACCACTGGCATCACCAAT
AATTCAACAATGGAAAACAGCCAATCACATTTCGATGGTTTAACTTCACC
AGAAAGCATCACCAACCCACATTCTCCAAGTTTAGATGATAAAAGCAATG
GCGGATACTACTCCAATGGCAGTCCACCAGATACATTTGTCAGATCCAGT
TCACAATCAAGTTTAACAGGAACAATGAGCCCTACAGAATATGGAGATTT
GAGATCACCAGTTGCACGTCAAGATACATTCTTCCCACAGAATCAATTAT
TTGATTCACAACCATTCCCAGGACAAACATACAATGTTTTTGGAGATAAT
ACAACAGTTCAACCATTAGATAGTCCACCAGTTCACCATCACCATATGAT
GAGTCCACAACAAAGCCTTGATATCAAATCACCACTCGATGTCAAACCAA
TGCAAAACTCACAACAATTCTACCAACATGATGTTTTACAACAACAAATC
CCTGGACAATTACCAAGTCCGAATTCACATCGTGGTGGCAATATGTCTTC
AATTGGGATTCCGAGCGTCTCTTCACCATATAGTGCTGGTTATAGACCGT
CTTATCCACAAGTGAACGATATGTTTGGACAAAGCAAACAAGATTTTTAT
ATGCAATCTCCATTTTACCCTGGATACCCTAATTACtgGTATTTACGACA
ACCGACCAATCAGATTTTGACATGTATGTGGATCGACCAATCACCGTTCC
CCAAATCAAAACCATGCAATAAACAATTCACAGTTATGCAAGATATCGTT
CGACACATAAACGACGAACACATCACTCGCTTAGACAACAATGAATATGT
CTGCTATTGGCAGAACTGTAGCAGGAATTTACTACCATTCAAAGCTAAAT
ACAAACTGGTAAATCACATTCGAGTACATACAGGAGAGAAACCGTTTCCA
TGTCCGTTTCCCGGTTGCGGTAAATTATTCGCCCGATCGGAAAATCTGAA
GATTCATAAAAGGACACATACAGGAAAACGCACAGGTGAAAAACCATTTC
CATGCGAGTATAGCGGTTGTGACCGTCGATTCGCTAATTCTTCCGACCGT
AAAAAACACATGCACGTTCACACGTCCGATAAACAACCTCACAACTGCCG
GACAACGCAGCCTAGCAACGGTAACCAAAGCAACGTAAACAAAATATGCA
GTAAACCGTACAGTCATTCGAACGTAACACGAAAACATACAAAGATAAGC
GATGGATATACAAACTCACATATCACTAACGATTTTATTAATACTTCGAC
TATAAGTAACGACGTCGCTAAAAATGGCTCGCCGACACCTTTCCCAGAAA
CAACAAAACCATTATCACACAGCGACCTAAACACAATTACCTATACAAAC
ATTTTAGACAAATTTCCCTTAGAGCACAACAATTTACCACACCATCAGAA
CAATATTACTAAACACGACTTAGAAGAGCTTAGTAACGACATTCGACAAC
AATTAACGGCAGTGACGGATATGACGTCACATCATTTGACTGGACCAGCA
GGACTCGACGATTCAGCCCTCATTGCGGCAACCCCTTGGTATAGCTACGG
AAATcatatttagtttttttaaagtcatttttttaaacgcatttttgtca
gattttttattttagccttgttttttattgctattttttaaattcttttg
tcgtttttttgaAGATAATATTGCGACCGTTCATAATACGAAAACTTTGC
CTACTAAGACATTGTAACCAcgttttaagattttttggtTCATAAGCCTA
AAGTTTACAGTAT
Run BLAST on NCBI

protein sequence of TCONS_00026509-protein

>TCONS_00026509-protein ID=TCONS_00026509-protein|Name=TCONS_00026509-protein|organism=Clytia hemisphaerica|type=polypeptide|length=517bp
MENSQSHFDGLTSPESITNPHSPSLDDKSNGGYYSNGSPPDTFVRSSSQS
SLTGTMSPTEYGDLRSPVARQDTFFPQNQLFDSQPFPGQTYNVFGDNTTV
QPLDSPPVHHHHMMSPQQSLDIKSPLDVKPMQNSQQFYQHDVLQQQIPGQ
LPSPNSHRGGNMSSIGIPSVSSPYSAGYRPSYPQVNDMFGQSKQDFYMQS
PFYPGYPNYWYLRQPTNQILTCMWIDQSPFPKSKPCNKQFTVMQDIVRHI
NDEHITRLDNNEYVCYWQNCSRNLLPFKAKYKLVNHIRVHTGEKPFPCPF
PGCGKLFARSENLKIHKRTHTGKRTGEKPFPCEYSGCDRRFANSSDRKKH
MHVHTSDKQPHNCRTTQPSNGNQSNVNKICSKPYSHSNVTRKHTKISDGY
TNSHITNDFINTSTISNDVAKNGSPTPFPETTKPLSHSDLNTITYTNILD
KFPLEHNNLPHHQNNITKHDLEELSNDIRQQLTAVTDMTSHHLTGPAGLD
DSALIAATPWYSYGNHI
Run BLAST on NCBI

transcript from alignment at sc0000574:57844..63729+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026509 ID=TCONS_00026509|Name=TCONS_00026509|organism=Clytia hemisphaerica|type=transcript|length=5886bp|location=Sequence derived from alignment at sc0000574:57844..63729+ (Clytia hemisphaerica)
GTTTATTTAACCAATTGTTAACCTCCAATACACACGAGGTTTAACGTggt
tttaaaatattctttaaagattttataCGATTTTCCAACACGAAAGCATA
TAGTTAGAACCATTGGAACCATAATAAAATTACATTGCTGATTGCTTATA
TTGATGATATTAGAGTTACTCCGTCACTGGAATAAATACATAGACGTgat
atttattatttaattaaaCTGGTaagtattttatcaaaataatatatttt
gaacttgaatTTTCCAAACTGTTGAACTGTGGGTAAACTgtacaaattat
tttgagagcTAAGAACATTCCAATTGCGGTAATTGAGTCAATTGCAATTG
CAATTGCaatgtatgtaatttttcataattttccaaaataaatgaaatat
aatCATCTTGGGTAAGACGAAAATTTTATGAATATAAATTTCAGATTTGC
CAGNGTATCGTTGGAACCATTGGAGCCATAATAAAATTACATTGCTGATT
GCTTATATTGATGATATTGGAGTTACTCCGTCACTGGAATAAATACATAG
ACGTagtatttattatttaattaaaCTGGTaagtattttatcaaaataat
acaTTTTGAACTTGAATTTTCCAAACTGTTGAACTGTGGGTGAACTgtac
aaattattttgagagcTAAGAACATTCCAATTGCGGTAATTGAGTCAATT
GCAATTGCAATTGCAATGCAtgtaatttttcattattttccaaaataaat
gaaatacaATCATCTTGGGTAAGACGAAAATTTTATGAATATAAATTTCA
GATTTGCCAGAACTTGAAGAGTCATAAATCAGGTTTGAAATTGAAATACT
GATGAAAAATTTCTCGAAATTTGCAATTTATTTAAAACGCCGAAGTATTA
TTGTAGAGTGACATTGTAGACTTGGCCAAGATTACTCTATCAATAATACA
GAAACATTTTTCTTCCAGTGGATcaaaaaactttgacaaaaaaaatatga
TGACTAAAATGGGACCAAATGTGTTTTAAGTGatttataatcaaaacatt
ccatAAAGCTACTTAGACAAAAATAATAAGTGCTCTCAAAGACTGTAGAC
CCAATTAAGGACATATTTTTTGTATTCCTTGTTATATTTGGGTAATTTTT
TCCTGAGGACTGCaactatttttagtaaatgttttattttgaataataat
GATGAATTATATAccttgaaattacattgaaataATTTGACCTTTTTAGG
GAAATCTTTTTTGTGCGCCTTAAATTCTTACTCTCTGATTGATTAATGGT
TGACCAATGACCTTTATAAATCACAAATTACATTAAGATCCCCTCTGTCA
TTAGTCCAATTTTAATTAACTAGTACAGTGAGTCTCCATGGTTCGAACAC
GCACAGGGAactcaaatttgttcgagtaaaggaaatttcgagatatGGAG
TTAGGTTTATAgggtattgttaactgaagggaaaACTTGTTTGGGTTTAT
GAGGCATTTaagttatagaggtttgagttaaaAAGACTCCACTATATTTT
AGTTATTGAGTCGTAAGCCAAAAATGGGTTGGTCTTTTGTGAATTTCATA
GAAATTCATacaatttgtcaaaaaataaaacaggaGTGTCACACAACGCC
CAATCCAATTAAGAATTTCGGCTTAAATAATATAACAACCAGATTTGATG
AATCACAAAAAGGTTAATACTGAAGTTGTCAAATAATGTTACCCAAACAT
AAAATCTTAGTGACAGGCggttaaattttttaaagaattatcCTCGACAG
GTTTTTTCAAGAAAGACAAAATATCTCATCTTATTTTGAAGTgtttaaac
ttttgaaacatttttttctcaatattgaTAAGATGCATAAGTCTTTGTGG
TAAGCTAAGCCCTAATGTTTATTTACATTAAGTCTTTATGTGAAAGTACC
CACTTAGtatttcaaaacattgaaacaGAATTTTGTATGACCGAATTTGT
GAGAAACGTGCCAAAGAAAAAATGTTCGGTCAGTTAATCATTTTGATTTC
GGATTAGTCCAATATTGTAGACATAACTTAGATTATAAATCCCTAATTTT
GAATGACACATCCCTGCCTCGTTGACCCAGGGTTATAAATTTTAGTCATT
AGGATTATATAAACAAATTTAAAGACCTAAGGGGATAGGAAAATCACTCA
CTTGTCAGTGAGATGGGAATCGCTATAAATCTCATATCTGAGAGagcaat
tttgattttcagtggAGATTAAATTTAGGGAATTTTTTGGTGGATTTCTC
GACGGTTACAGTGTCCTTCAGGATCAGTGACTCAGGGGTGTATAAAGTAC
CAACTGAAAAATAGTATTTTCCTTAAAAACGATGATATTGCCTAAAAATG
CTCCTAAATATATTACATGAAAAAGCTGCACAAAAATTGAGCTGTTGGCA
TGGAAATATCCCATACGATACTGCCTATCATTTGTTATTTTGCATCATGC
ACTAGTGTTTGCAAAGCTATAACCGTTAATAGCCACATGAAATAAGGAAC
CGGCCGTTTGGGTCTGTTTACATTGCGGTCACAAATGAAATTACAAAATG
TTCATGGGTTAACAAGACAAGAACCTATTGTTTTATTGTCTTTATTACCA
AAACTGACACTTGAAATAGTTGTTGACAATGAAACTATAACACAtctatt
gttctttttgtttttcttatcaACCAATGAGCATCGtatctgtaaaaaaa
aactttaaaaaggttGTTCTTCCTAATTTCCGATAGTATTTGATGAGAGG
GTAGTAACAGAGTTGTGTACATTAAGTGACACCTTCATATTTGCAAAAGG
CATTAATATTTGAACTTACCACGCACCCGCCAAGTGTATAATAAATGAGT
ATGGTGGTTAAAGAACAAGAGACACTACCAACTTATATGCAATTAGAATC
TTATAATAACCAGAACACACAAATGTTCTCGTTTTCAGACACGAACACAA
CCACTGGCATCACCAATAATTCAACAATGGAAAACAGCCAATCACATTTC
GATGGTTTAACTTCACCAGAAAGCATCACCAACCCACATTCTCCAAGTTT
AGATGATAAAAGCAATGGCGGATACTACTCCAATGGCAGTCCACCAGATA
CATTTGTCAGATCCAGTTCACAATCAAGTTTAACAGGAACAATGAGCCCT
ACAGAATATGGAGATTTGAGATCACCAGTTGCACGTCAAGATACATTCTT
CCCACAGAATCAATTATTTGATTCACAACCATTCCCAGGACAAACATACA
ATGTTTTTGGAGATAATACAACAGTTCAACCATTAGATAGTCCACCAGTT
CACCATCACCATATGATGAGTCCACAACAAAGCCTTGATATCAAATCACC
ACTCGATGTCAAACCAATGCAAAACTCACAACAATTCTACCAACATGATG
TTTTACAACAACAAATCCCTGGACAATTACCAAGTCCGAATTCACATCGT
GGTGGCAATATGTCTTCAATTGGGATTCCGAGCGTCTCTTCACCATATAG
TGCTGGTTATAGACCGTCTTATCCACAAGTGAACGATATGTTTGGACAAA
GCAAACAAGATTTTTATATGCAATCTCCATTTTACCCTGGATACCCTAAT
TACtggtaagaaatatttttatattgaatattttcagttttacgATGATT
AAAGCTCGGATACTCTTTTAAATTTCCGTCATATTTATGGGCATACATTA
AAAACAATAAAGTATTCAAGAGCCTCTAGCTAAAGGTGTCTTATTATGTC
TAGAGACATCATCGCGGAATATTTTTATAGTTGCACTTAAGCAttgcaaa
accttaaaaaaccaaaaaaattcaACATTGAATTTCCTTGAAGGGGATAT
AAAAGGTACTGTTTGAAATTTAATATCCCGGAGCACCACTTAAGTGTAAC
AGCCAAATGAGATGATCACTTAGAAACAATCTAGTGCCGAAAGACAGATA
GTGGTTTTAGAAAACTTCAAATTGTTGCTTGAAGTNCAAAGCCGAAAGAT
AGATAGtggtttttgaaaacttaaaattgtTGCTTGAAGTAAACATAAAC
ATTGTTTTTTGGTTGGAACAATAAATTCATTTGAGCTGCTGTCAGCTTCC
TATTTATGGTAGAATGCATCATTATAGCAACAATGTTCGAAAGTGACCAT
TTTTAAAGTTGGTTAAGGTGTTTTTACTAAAAAACTAAGTTTCAAATAAT
GGTCAAAGTAGATTTTTTCGTCTGAGAAGGAAAATGGATTTCACACAGCA
ATTTAAACTAATTCGTGAACTTTTGATGACTTATGCAGAATTTGTAGGCG
GAAAAATCCCTTTACATACTTCACTGAGACGAAAGAACTTTAAAAACTGT
ATAAAGACGTATAAAGTCTATATTTAAGACCACGTATGCTACTTttcagg
aaaaatcaaaattattcttTCAATTCTTCAGGTATTTACGACAACCGACC
AATCAGATTTTGACATGTATGTGGATCGACCAATCACCGTTCCCCAAATC
AAAACCATGCAATAAACAATTCACAGTTATGCAAGATATCGTTCGACACA
TAAACGACGAACACATCACTCGCTTAGACAACAATGAATATGTCTGCTAT
TGGCAGAACTGTAGCAGGAATTTACTACCATTCAAAGCTAAATACAAACT
GGTAAATCACATTCGAGTACATACAGGAGAGAAACCGTTTCCATGTCCGT
TTCCCGGTTGCGGTAAATTATTCGCCCGATCGGAAAATCTGAAGATTCAT
AAAAGGACACATACAGGAAAACGCACAGGTTAGTTTCTATGTCAAAATAA
CGCCTTTCTAACGTCCGTATAACGTTAGATTGAcgttaaaataatatttt
gtgtTGTCTaggtaaaaaatttttcagaaggCATATTTTAATGATTAAAA
GTTTCTCAATTCATTTCGTTTGAAATTTGATGTTAAGAGTCTACGATGAA
CTATTTTTAATCGTCTAAAGTCGACATACGTCTCATAAACAAATCGCGTA
TATTCCGACTAGTATTTTTGCCACGTTGTAacgtttaaaatttttctatt
tcCAACAGGTGAAAAACCATTTCCATGCGAGTATAGCGGTTGTGACCGTC
GATTCGCTAATTCTTCCGACCGTAAAAAACACATGCACGTTCACACGTCC
GATAAACAACCTCACAACTGCCGGACAACGCAGCCTAGCAACGGTAACCA
AAGCAACGTAAACAAAATATGCAGTAAACCGTACAGTCATTCGAACGTAA
CACGAAAACATACAAAGATAAGCGATGGATATACAAACTCACATATCACT
AACGATTTTATTAATACTTCGACTATAAGTAACGACGTCGCTAAAAATGG
CTCGCCGACACCTTTCCCAGAAACAACAAAACCATTATCACACAGCGACC
TAAACACAATTACCTATACAAACATTTTAGACAAATTTCCCTTAGAGCAC
AACAATTTACCACACCATCAGAACAATATTACTAAACACGACTTAGAAGA
GCTTAGTAACGACATTCGACAACAATTAACGGCAGTGACGGATATGACGT
CACATCATTTGACTGGACCAGCAGGACTCGACGATTCAGCCCTCATTGCG
GCAACCCCTTGGTATAGCTACGGAAATcatatttagtttttttaaagtca
tttttttaaacgcatttttgtcagattttttattttagccttgtttttta
ttgctattttttaaattcttttgtcgtttttttgaAGATAATATTGCGAC
CGTTCATAATACGAAAACTTTGCCTACTAAGACATTGTAACCAcgtttta
agattttttggtTCATAAGCCTAAAGTTTACAGTAT

Coding sequence (CDS) from alignment at sc0000574:57844..63729+

>TCONS_00026509 ID=TCONS_00026509|Name=TCONS_00026509|organism=Clytia hemisphaerica|type=CDS|length=4662bp|location=Sequence derived from alignment at sc0000574:57844..63729+ (Clytia hemisphaerica)
ATGGAAAACAGCCAATCACATTTCGATGGTTTAACTTCACCAGAAAGCAT
CACCAACCCACATTCTCCAAGTTTAGATGATAAAAGCAATGGCGGATACT
ACTCCAATGGCAGTCCACCAGATACATTTGTCAGATCCAGTTCACAATCA
AGTTTAACAGGAACAATGAGCCCTACAGAATATGGAGATTTGAGATCACC
AGTTGCACGTCAAGATACATTCTTCCCACAGAATCAATTATTTGATTCAC
AACCATTCCCAGGACAAACATACAATGTTTTTGGAGATAATACAACAGTT
CAACCATTAGATAGTCCACCAGTTCACCATCACCATATGATGAGTCCACA
ACAAAGCCTTGATATCAAATCACCACTCGATGTCAAACCAATGCAAAACT
CACAACAATTCTACCAACATGATGTTTTACAACAACAAATCCCTGGACAA
TTACCAAGTCCGAATTCACATCGTGGTGGCAATATGTCTTCAATTGGGAT
TCCGAGCGTCTCTTCACCATATAGTGCTGGTTATAGACCGTCTTATCCAC
AAGTGAACGATATGTTTGGACAAAGCAAACAAGATTTTTATATGCAATCT
CCATTTTACCCTGGATACCCTAATTACtgGTATTTACGACAACCGACCAA
TCAGATTTTGACATGTATGTGGATCGACCAATCACCGTTCCCCAAATCAA
AACCATGCAATAAACAATTCACAGTTATGCAAGATATCGTTCGACACATA
AACGACGAACACATCACTCGCTTAGACAACAATGAATATGTCTGCTATTG
GCAGAACTGTAGCAGGAATTTACTACCATTCAAAGCTAAATACAAACTGG
TAAATCACATTCGAGTACATACAGGAGAGAAACCGTTTCCATGTCCGTTT
CCCGGTTGCGGTAAATTATTCGCCCGATCGGAAAATCTGAAGATTCATAA
AAGGACACATACAGGAAAACGCACAGGTGAAAAACCATTTCCATGCGAGT
ATAGCGGTTGTGACCGTCGATTCGCTAATTCTTCCGACCGTAAAAAACAC
ATGCACGTTCACACGTCCGATAAACAACCTCACAACTGCCGGACAACGCA
GCCTAGCAACGGTAACCAAAGCAACGTAAACAAAATATGCAGTAAACCGT
ACAGTCATTCGAACGTAACACGAAAACATACAAAGATAAGCGATGGATAT
ACAAACTCACATATCACTAACGATTTTATTAATACTTCGACTATAAGTAA
CGACGTCGCTAAAAATGGCTCGCCGACACCTTTCCCAGAAACAACAAAAC
CATTATCACACAGCGACCTAAACACAATTACCTATACAAACATTTTAGAC
AAATTTCCCTTAGAGCACAACAATTTACCACACCATCAGAACAATATTAC
TAAACACGACTTAGAAGAGCTTAGTAACGACATTCGACAACAATTAACGG
CAGTGACGGATATGACGTCACATCATTTGACTGGACCAGCAGGACTCGAC
GATTCAGCCCTCATTGCGGCAACCCCTTGGTATAGCTACGGAAATcatat
ttagATGGAAAACAGCCAATCACATTTCGATGGTTTAACTTCACCAGAAA
GCATCACCAACCCACATTCTCCAAGTTTAGATGATAAAAGCAATGGCGGA
TACTACTCCAATGGCAGTCCACCAGATACATTTGTCAGATCCAGTTCACA
ATCAAGTTTAACAGGAACAATGAGCCCTACAGAATATGGAGATTTGAGAT
CACCAGTTGCACGTCAAGATACATTCTTCCCACAGAATCAATTATTTGAT
TCACAACCATTCCCAGGACAAACATACAATGTTTTTGGAGATAATACAAC
AGTTCAACCATTAGATAGTCCACCAGTTCACCATCACCATATGATGAGTC
CACAACAAAGCCTTGATATCAAATCACCACTCGATGTCAAACCAATGCAA
AACTCACAACAATTCTACCAACATGATGTTTTACAACAACAAATCCCTGG
ACAATTACCAAGTCCGAATTCACATCGTGGTGGCAATATGTCTTCAATTG
GGATTCCGAGCGTCTCTTCACCATATAGTGCTGGTTATAGACCGTCTTAT
CCACAAGTGAACGATATGTTTGGACAAAGCAAACAAGATTTTTATATGCA
ATCTCCATTTTACCCTGGATACCCTAATTACtgGTATTTACGACAACCGA
CCAATCAGATTTTGACATGTATGTGGATCGACCAATCACCGTTCCCCAAA
TCAAAACCATGCAATAAACAATTCACAGTTATGCAAGATATCGTTCGACA
CATAAACGACGAACACATCACTCGCTTAGACAACAATGAATATGTCTGCT
ATTGGCAGAACTGTAGCAGGAATTTACTACCATTCAAAGCTAAATACAAA
CTGGTAAATCACATTCGAGTACATACAGGAGAGAAACCGTTTCCATGTCC
GTTTCCCGGTTGCGGTAAATTATTCGCCCGATCGGAAAATCTGAAGATTC
ATAAAAGGACACATACAGGAAAACGCACAGGTGAAAAACCATTTCCATGC
GAGTATAGCGGTTGTGACCGTCGATTCGCTAATTCTTCCGACCGTAAAAA
ACACATGCACGTTCACACGTCCGATAAACAACCTCACAACTGCCGGACAA
CGCAGCCTAGCAACGGTAACCAAAGCAACGTAAACAAAATATGCAGTAAA
CCGTACAGTCATTCGAACGTAACACGAAAACATACAAAGATAAGCGATGG
ATATACAAACTCACATATCACTAACGATTTTATTAATACTTCGACTATAA
GTAACGACGTCGCTAAAAATGGCTCGCCGACACCTTTCCCAGAAACAACA
AAACCATTATCACACAGCGACCTAAACACAATTACCTATACAAACATTTT
AGACAAATTTCCCTTAGAGCACAACAATTTACCACACCATCAGAACAATA
TTACTAAACACGACTTAGAAGAGCTTAGTAACGACATTCGACAACAATTA
ACGGCAGTGACGGATATGACGTCACATCATTTGACTGGACCAGCAGGACT
CGACGATTCAGCCCTCATTGCGGCAACCCCTTGGTATAGCTACGGAAATc
atatttagATGGAAAACAGCCAATCACATTTCGATGGTTTAACTTCACCA
GAAAGCATCACCAACCCACATTCTCCAAGTTTAGATGATAAAAGCAATGG
CGGATACTACTCCAATGGCAGTCCACCAGATACATTTGTCAGATCCAGTT
CACAATCAAGTTTAACAGGAACAATGAGCCCTACAGAATATGGAGATTTG
AGATCACCAGTTGCACGTCAAGATACATTCTTCCCACAGAATCAATTATT
TGATTCACAACCATTCCCAGGACAAACATACAATGTTTTTGGAGATAATA
CAACAGTTCAACCATTAGATAGTCCACCAGTTCACCATCACCATATGATG
AGTCCACAACAAAGCCTTGATATCAAATCACCACTCGATGTCAAACCAAT
GCAAAACTCACAACAATTCTACCAACATGATGTTTTACAACAACAAATCC
CTGGACAATTACCAAGTCCGAATTCACATCGTGGTGGCAATATGTCTTCA
ATTGGGATTCCGAGCGTCTCTTCACCATATAGTGCTGGTTATAGACCGTC
TTATCCACAAGTGAACGATATGTTTGGACAAAGCAAACAAGATTTTTATA
TGCAATCTCCATTTTACCCTGGATACCCTAATTACtgGTATTTACGACAA
CCGACCAATCAGATTTTGACATGTATGTGGATCGACCAATCACCGTTCCC
CAAATCAAAACCATGCAATAAACAATTCACAGTTATGCAAGATATCGTTC
GACACATAAACGACGAACACATCACTCGCTTAGACAACAATGAATATGTC
TGCTATTGGCAGAACTGTAGCAGGAATTTACTACCATTCAAAGCTAAATA
CAAACTGGTAAATCACATTCGAGTACATACAGGAGAGAAACCGTTTCCAT
GTCCGTTTCCCGGTTGCGGTAAATTATTCGCCCGATCGGAAAATCTGAAG
ATTCATAAAAGGACACATACAGGAAAACGCACAGGTGAAAAACCATTTCC
ATGCGAGTATAGCGGTTGTGACCGTCGATTCGCTAATTCTTCCGACCGTA
AAAAACACATGCACGTTCACACGTCCGATAAACAACCTCACAACTGCCGG
ACAACGCAGCCTAGCAACGGTAACCAAAGCAACGTAAACAAAATATGCAG
TAAACCGTACAGTCATTCGAACGTAACACGAAAACATACAAAGATAAGCG
ATGGATATACAAACTCACATATCACTAACGATTTTATTAATACTTCGACT
ATAAGTAACGACGTCGCTAAAAATGGCTCGCCGACACCTTTCCCAGAAAC
AACAAAACCATTATCACACAGCGACCTAAACACAATTACCTATACAAACA
TTTTAGACAAATTTCCCTTAGAGCACAACAATTTACCACACCATCAGAAC
AATATTACTAAACACGACTTAGAAGAGCTTAGTAACGACATTCGACAACA
ATTAACGGCAGTGACGGATATGACGTCACATCATTTGACTGGACCAGCAG
GACTCGACGATTCAGCCCTCATTGCGGCAACCCCTTGGTATAGCTACGGA
AATcatatttag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014908XLOC_014908Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026509-proteinTCONS_00026509-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026509-exon-sc0000574-1491911889:57844..58032TCONS_00026509-exon-sc0000574-1491911889:57844..58032Clytia hemisphaericaexon
TCONS_00026509-exon-sc0000574-1510915933:57844..58032TCONS_00026509-exon-sc0000574-1510915933:57844..58032Clytia hemisphaericaexon
TCONS_00026509-exon-sc0000574-1575043694:57844..58032TCONS_00026509-exon-sc0000574-1575043694:57844..58032Clytia hemisphaericaexon
TCONS_00026509-exon-sc0000574-1491911889:58390..58421TCONS_00026509-exon-sc0000574-1491911889:58390..58421Clytia hemisphaericaexon
TCONS_00026509-exon-sc0000574-1510915933:58390..58421TCONS_00026509-exon-sc0000574-1510915933:58390..58421Clytia hemisphaericaexon
TCONS_00026509-exon-sc0000574-1575043694:58390..58421TCONS_00026509-exon-sc0000574-1575043694:58390..58421Clytia hemisphaericaexon
TCONS_00026509-exon-sc0000574-1491911889:60832..61498TCONS_00026509-exon-sc0000574-1491911889:60832..61498Clytia hemisphaericaexon
TCONS_00026509-exon-sc0000574-1510915933:60832..61498TCONS_00026509-exon-sc0000574-1510915933:60832..61498Clytia hemisphaericaexon
TCONS_00026509-exon-sc0000574-1575043694:60832..61498TCONS_00026509-exon-sc0000574-1575043694:60832..61498Clytia hemisphaericaexon
TCONS_00026509-exon-sc0000574-1491911889:62325..62671TCONS_00026509-exon-sc0000574-1491911889:62325..62671Clytia hemisphaericaexon
TCONS_00026509-exon-sc0000574-1510915933:62325..62671TCONS_00026509-exon-sc0000574-1510915933:62325..62671Clytia hemisphaericaexon
TCONS_00026509-exon-sc0000574-1575043694:62325..62671TCONS_00026509-exon-sc0000574-1575043694:62325..62671Clytia hemisphaericaexon
TCONS_00026509-exon-sc0000574-1491911889:62952..63729TCONS_00026509-exon-sc0000574-1491911889:62952..63729Clytia hemisphaericaexon
TCONS_00026509-exon-sc0000574-1510915933:62952..63729TCONS_00026509-exon-sc0000574-1510915933:62952..63729Clytia hemisphaericaexon
TCONS_00026509-exon-sc0000574-1575043694:62952..63729TCONS_00026509-exon-sc0000574-1575043694:62952..63729Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000574supercontigsc0000574:57844..63729 +
Expression

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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	4.79633	5.90663	0.428062	3.18552e-08	0	1.10891	0.820357	1.45859	0	3.93828e-07	0	0	0	0.774789	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
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BLAST of TCONS_00026509 vs. Swiss-Prot (Human)
Match: ZIC3 (Zinc finger protein ZIC 3 OS=Homo sapiens GN=ZIC3 PE=1 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 8.856e-71
Identity = 139/307 (45.28%), Postives = 179/307 (58.31%), Query Frame = 2 
Query:  686 LQQQIPGQLPSPNSHRGGNMSSIGI------------PSVS---SPYSAGYR-PSYPQVNDMFGQSKQDFYMQSPFYPGYPNYWYLRQPTNQILTCMWIDQSPFPK-SKPCNKQFTVMQDIVRHINDEHITRLDNNEYVCYWQNCSRNLLPFKAKYKLVNHIRVHTGEKPFPCPFPGCGKLFARSENLKIHKRTHTGKRTGEKPFPCEYSGCDRRFANSSDRKKHMHVHTSDKQPHNCRTTQPSNGNQSNVNKICSKPYSHSNVTRKHTKI--SDGYTNSHITNDFINTST---ISNDVAKNGSPTP 1540
            L +Q  G  PSP  H   N   +G+            P  S    PY+AG + P+Y  +N   G +    +    F+       Y+RQP  Q L+C WID++   +  K C++ F+ M ++V H+  EH+   + N +VCYW+ C R    FKAKYKLVNHIRVHTGEKPFPCPFPGCGK+FARSENLKIHKRTH    TGEKPF CE+ GCDRRFANSSDRKKHMHVHTSDK P+ C              K+C K Y+H +  RKH K+  S G  +S   +    +ST   I++  +K+ + TP
Sbjct:  165 LHEQGAGH-PSPTGHVDNNQVHLGLRGELFGRADPYRPVASPRTDPYAAGAQFPNYSPMNMNMGVNVAAHHGPGAFF------RYMRQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTH----TGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDK-PYIC--------------KVCDKSYTHPSSLRKHMKVHESQGSDSSPAASSGYESSTPPAIASANSKDTTKTP 445
The following BLAST results are available for this feature:
BLAST of TCONS_00026509 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZIC38.856e-7145.28Zinc finger protein ZIC 3 OS=Homo sapiens GN=ZIC3 ... [more]
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