TCONS_00026509-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00026509-protein
Unique Name	TCONS_00026509-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	517

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00026509-protein ID=TCONS_00026509-protein|Name=TCONS_00026509-protein|organism=Clytia hemisphaerica|type=polypeptide|length=517bp
MENSQSHFDGLTSPESITNPHSPSLDDKSNGGYYSNGSPPDTFVRSSSQS
SLTGTMSPTEYGDLRSPVARQDTFFPQNQLFDSQPFPGQTYNVFGDNTTV
QPLDSPPVHHHHMMSPQQSLDIKSPLDVKPMQNSQQFYQHDVLQQQIPGQ
LPSPNSHRGGNMSSIGIPSVSSPYSAGYRPSYPQVNDMFGQSKQDFYMQS
PFYPGYPNYWYLRQPTNQILTCMWIDQSPFPKSKPCNKQFTVMQDIVRHI
NDEHITRLDNNEYVCYWQNCSRNLLPFKAKYKLVNHIRVHTGEKPFPCPF
PGCGKLFARSENLKIHKRTHTGKRTGEKPFPCEYSGCDRRFANSSDRKKH
MHVHTSDKQPHNCRTTQPSNGNQSNVNKICSKPYSHSNVTRKHTKISDGY
TNSHITNDFINTSTISNDVAKNGSPTPFPETTKPLSHSDLNTITYTNILD
KFPLEHNNLPHHQNNITKHDLEELSNDIRQQLTAVTDMTSHHLTGPAGLD
DSALIAATPWYSYGNHI

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_014908	XLOC_014908	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00026509	TCONS_00026509	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013087	Znf_C2H2_type
IPR013083	Znf_RING/FYVE/PHD

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013087	Zinc finger C2H2-type	SMART	SM00355	c2h2final6	coord: 220..254 e-value: 180.0 score: 2.1 coord: 263..290 e-value: 14.0 score: 11.9 coord: 330..354 e-value: 0.0026 score: 27.0 coord: 296..320 e-value: 5.6E-4 score: 29.2
IPR013087	Zinc finger C2H2-type	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 298..320
IPR013087	Zinc finger C2H2-type	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 332..354
IPR013087	Zinc finger C2H2-type	PROSITE	PS50157	ZINC_FINGER_C2H2_2	coord: 330..359 score: 11.946
IPR013087	Zinc finger C2H2-type	PROSITE	PS50157	ZINC_FINGER_C2H2_2	coord: 268..295 score: 9.806
IPR013087	Zinc finger C2H2-type	PROSITE	PS50157	ZINC_FINGER_C2H2_2	coord: 296..325 score: 14.524
IPR013087	Zinc finger C2H2-type	SUPERFAMILY	57667	beta-beta-alpha zinc fingers	coord: 277..324
IPR013087	Zinc finger C2H2-type	SUPERFAMILY	57667	beta-beta-alpha zinc fingers	coord: 325..358
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10		coord: 311..333 e-value: 8.5E-4 score: 19.0
None	No IPR available	GENE3D	3.30.160.60		coord: 351..401 e-value: 1.2E-4 score: 21.5
None	No IPR available	GENE3D	3.30.160.60		coord: 220..257 e-value: 5.1E-5 score: 22.7 coord: 334..350 e-value: 1.0E-7 score: 31.3 coord: 262..287 e-value: 3.9E-11 score: 42.3
None	No IPR available	PFAM	PF00096	zf-C2H2	coord: 330..354 e-value: 0.013 score: 15.9 coord: 296..320 e-value: 1.9E-4 score: 21.6
None	No IPR available	GENE3D	2.40.155.10		coord: 288..310 e-value: 5.8E-17 score: 62.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..64
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 352..376
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 147..168

Blast

[Close]

BLAST of TCONS_00026509-protein vs. Swiss-Prot (Human)
Match: ZIC3 (Zinc finger protein ZIC 3 OS=Homo sapiens GN=ZIC3 PE=1 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 1.669e-73
Identity = 139/307 (45.28%), Postives = 179/307 (58.31%), Query Frame = 0

Query:  143 LQQQIPGQLPSPNSHRGGNMSSIGI------------PSVS---SPYSAGYR-PSYPQVNDMFGQSKQDFYMQSPFYPGYPNYWYLRQPTNQILTCMWIDQSPFPK-SKPCNKQFTVMQDIVRHINDEHITRLDNNEYVCYWQNCSRNLLPFKAKYKLVNHIRVHTGEKPFPCPFPGCGKLFARSENLKIHKRTHTGKRTGEKPFPCEYSGCDRRFANSSDRKKHMHVHTSDKQPHNCRTTQPSNGNQSNVNKICSKPYSHSNVTRKHTKI--SDGYTNSHITNDFINTST---ISNDVAKNGSPTP 427
            L +Q  G  PSP  H   N   +G+            P  S    PY+AG + P+Y  +N   G +    +    F+       Y+RQP  Q L+C WID++   +  K C++ F+ M ++V H+  EH+   + N +VCYW+ C R    FKAKYKLVNHIRVHTGEKPFPCPFPGCGK+FARSENLKIHKRTH    TGEKPF CE+ GCDRRFANSSDRKKHMHVHTSDK P+ C              K+C K Y+H +  RKH K+  S G  +S   +    +ST   I++  +K+ + TP
Sbjct:  165 LHEQGAGH-PSPTGHVDNNQVHLGLRGELFGRADPYRPVASPRTDPYAAGAQFPNYSPMNMNMGVNVAAHHGPGAFF------RYMRQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTH----TGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDK-PYIC--------------KVCDKSYTHPSSLRKHMKVHESQGSDSSPAASSGYESSTPPAIASANSKDTTKTP 445

The following BLAST results are available for this feature:

BLAST of TCONS_00026509-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00026509-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ZIC3	1.669e-73	45.28	Zinc finger protein ZIC 3 OS=Homo sapiens GN=ZIC3 ...	[more]

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TCONS_00026509-protein (polypeptide) - C. hemisphaerica