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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026507 ID=TCONS_00026507|Name=TCONS_00026507|organism=Clytia hemisphaerica|type=transcript|length=598bp
aaattatgaaatatttttctaaaaaatgaagtttattttgatacttttga
aatcaaaaaataaattctctCTAAAATATGTCTTTGCTATAAATTGCAAA
TATTGACTGCACGATTGGAATTATTGGAGTTTTTCGAATGATTTTGGTGA
TTTcgatatgaaaataaaaacgttCATATATGTTTTAATAGCTCCATTCT
TATCATCAGTACAATGCCAATTGTACGAGGTCACACAACATCAAAATGGA
ACATCAAAAAATGAGTCAAAACCTCTCTCAGCGAGATCGCCAACCGAATG
TATTTTAAAATGTCGTGTTAAATGTATGAAAAGTTATTTTGTGGAAAATG
AGAACCAATGCTATTGTTTAATAAATCAAATTGAGATGCCGAATTCTAAA
GAAGGTGTTTTGTaccaagaaaatgaaaacacagaaTGCGATGCAGATCA
GGAACGTTATTGTGAAGAATGTATCGTTGGAAAAACCTTCAAGAATTGCA
AAGATGTTCAAGAGAAGTGTCCATGTTGTAGAAAACGCTCAGATTTTTAC
TTATTGCAGTTCGACGGATTTTCAGCCAGCAAAGGCTTTTGTGAAATG Run BLAST on NCBI protein sequence of TCONS_00026507-protein >TCONS_00026507-protein ID=TCONS_00026507-protein|Name=TCONS_00026507-protein|organism=Clytia hemisphaerica|type=polypeptide|length=147bp
MKIKTFIYVLIAPFLSSVQCQLYEVTQHQNGTSKNESKPLSARSPTECIL
KCRVKCMKSYFVENENQCYCLINQIEMPNSKEGVLYQENENTECDADQER
YCEECIVGKTFKNCKDVQEKCPCCRKRSDFYLLQFDGFSASKGFCEM Run BLAST on NCBI transcript from alignment at sc0000574:36526..37678+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00026507 ID=TCONS_00026507|Name=TCONS_00026507|organism=Clytia hemisphaerica|type=transcript|length=1153bp|location=Sequence derived from alignment at sc0000574:36526..37678+ (Clytia hemisphaerica)
aaattatgaaatatttttctaaaaaatgaagtttattttgatacttttga
aatcaaaaaataaattctctCTAAAATATGTCTTTGCTATAAATTGCAAA
TATTGACTGCACGATTGGAATTATTGGAGTTTTTCGAATGATTTTGGTGA
TTTcgatatgaaaataaaaacgttCATATATGTTTTAATAGCTCCATTCT
TATCATCAGTACAATGCCAATTGTACGAGGTCACACAACATCAAAATGGA
ACATCAAAAAATGAGTCAAAACCTCTCTCAGCGAGATCGCCAACCGAATG
TATTTTAAAATGTCGTGTTAAATGTATGAAAAGTTATTTTGTGGAAAATG
AGAACCAATGCTATTGTTTAATAAATCAAATTGAGATGCCGAATTCTAAA
GAAGGTGTTTTGTaccaagaaaatgaaaacacagaaTGCGATGCAGATCA
GGTATATTCTTACGAAACTGTTATTCGACTTTACACTTTaaggccccccc
cagcggtttgggTGAATGCATGAATGGGTATGCGTGAAAAagaaatgcgt
gaatgcgtgaattgaaaaaacttgcgtgaacgtgaaaatccactttttga
ttgcgtgaatgcatgaatctgggctattttgtgcgtgaacaCGTGAATTT
TCCATTTCTCCCCCCGATTATGtccagttttcccgattttccaatgtttc
ccaaaaaattttccgattttctgaaaaatcaggttattgcgtgaaactcg
agatAAACTTAAATTAGCACTGGTGCAAAAGAATCATCAAAATTATGAAC
ATGAATTAATTCACCTGAGCGAGGGTggacaattttttcaaagttgatgG
TGATTCAAGAAAAATGCGACGGTTTATCGGTGTTCACGACCCCCGTACGG
CACCACACTTTTCAGTCTCTCCTTCACATTCTAGGGTTAAAAGCTTTGAT
TGCCACCAGAAAAAATCAATATCTGTTGATAAAATCGGATCAAACAATAT
TTTTAGGAACGTTATTGTGAAGAATGTATCGTTGGAAAAACCTTCAAGAA
TTGCAAAGATGTTCAAGAGAAGTGTCCATGTTGTAGAAAACGCTCAGATT
TTTACTTATTGCAGTTCGACGGATTTTCAGCCAGCAAAGGCTTTTGTGAA
ATG Coding sequence (CDS) from alignment at sc0000574:36526..37678+ >TCONS_00026507 ID=TCONS_00026507|Name=TCONS_00026507|organism=Clytia hemisphaerica|type=CDS|length=882bp|location=Sequence derived from alignment at sc0000574:36526..37678+ (Clytia hemisphaerica)
atgaaaataaaaacgttCATATATGTTTTAATAGCTCCATTCTTATCATC
AGTACAATGCCAATTGTACGAGGTCACACAACATCAAAATGGAACATCAA
AAAATGAGTCAAAACCTCTCTCAGCGAGATCGCCAACCGAATGTATTTTA
AAATGTCGTGTTAAATGTATGAAAAGTTATTTTGTGGAAAATGAGAACCA
ATGCTATTGTTTAATAAATCAAATTGAGATGCCGAATTCTAAAGAAGGTG
TTTTGTaccaagaaaatgaaaacacagaaTGCGATGCAGATCAGGAACGT
TATTGTGAAGAATGTATCGTTGGAAAAACCTTCAAGAATTGCAAAGATGT
TCAAGAGAAGTGTCCATGTTGTAGAAAACGCTCAGATTTTTACTTATTGC
AGTTCGACGGATTTTCAGCCAGCAAAGGCTTTTGTGAAATGatgaaaata
aaaacgttCATATATGTTTTAATAGCTCCATTCTTATCATCAGTACAATG
CCAATTGTACGAGGTCACACAACATCAAAATGGAACATCAAAAAATGAGT
CAAAACCTCTCTCAGCGAGATCGCCAACCGAATGTATTTTAAAATGTCGT
GTTAAATGTATGAAAAGTTATTTTGTGGAAAATGAGAACCAATGCTATTG
TTTAATAAATCAAATTGAGATGCCGAATTCTAAAGAAGGTGTTTTGTacc
aagaaaatgaaaacacagaaTGCGATGCAGATCAGGAACGTTATTGTGAA
GAATGTATCGTTGGAAAAACCTTCAAGAATTGCAAAGATGTTCAAGAGAA
GTGTCCATGTTGTAGAAAACGCTCAGATTTTTACTTATTGCAGTTCGACG
GATTTTCAGCCAGCAAAGGCTTTTGTGAAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00026507-exon-sc0000574-1491911889:36526..36976 | TCONS_00026507-exon-sc0000574-1491911889:36526..36976 | Clytia hemisphaerica | exon |
| TCONS_00026507-exon-sc0000574-1510915933:36526..36976 | TCONS_00026507-exon-sc0000574-1510915933:36526..36976 | Clytia hemisphaerica | exon |
| TCONS_00026507-exon-sc0000574-1575043694:36526..36976 | TCONS_00026507-exon-sc0000574-1575043694:36526..36976 | Clytia hemisphaerica | exon |
| TCONS_00026507-exon-sc0000574-1491911889:37532..37678 | TCONS_00026507-exon-sc0000574-1491911889:37532..37678 | Clytia hemisphaerica | exon |
| TCONS_00026507-exon-sc0000574-1510915933:37532..37678 | TCONS_00026507-exon-sc0000574-1510915933:37532..37678 | Clytia hemisphaerica | exon |
| TCONS_00026507-exon-sc0000574-1575043694:37532..37678 | TCONS_00026507-exon-sc0000574-1575043694:37532..37678 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000574 | supercontig | sc0000574:36526..37678 + |
Blast
The following BLAST results are available for this feature:
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