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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026316 ID=TCONS_00026316|Name=TCONS_00026316|organism=Clytia hemisphaerica|type=transcript|length=1593bp
tgcAAGACGAGTTTCATtaaagaggaacaaacgtgacgAAGGGAGTTTCT
TTCGGGGGTAGCTGTTGTCTTAAACACAGACactatccgccgcgaaacat
aattcgttttataatatacaaactatgttatatcataataatatattata
cggacgatagcatcgtctacccCAAATATCCCCATTCCGATAACAAACAC
ATAGACTGTTCATATTGATCCATGTTTTgggattgattgatttatttatt
ggcgtgattaaaatttataaattctgATAAAAGCAGGCCCGGCGGAgcaa
ccgtaaaagtggagaggctgaaagCTTAAATTGGGATAAAATTCGCTAGC
AATTTGGAGTtatagaaatttgagaaaataaaaaataattgcccgcttcc
accgggcctgaaaagaattgaaaaaaattaataaatattcagtatagaaa
aaataaattgaaaaaaaagctaCAAATATAATCTCCTCACACGATTGGCA
TTATTGAGAGTCTGAATATTTCCTCTGTATTATGCTTCCGCAagacaaaa
ttcaaaaaattattttctggaACACATGTCCGTGAAAAATGCGATGTAAT
ATTTTAAATAGatgttagaaaaataaatttacaccCTATGTTCAGGAGGT
TATATTTTCCGTCCAGAGGGCATGGGAAAGGATGCTCAAATACCTGAACG
AATCCATGCATGGGCTCTCTTAAAATAGAATCtttattgttgtttatgaa
atataacaacaacaacacctGACTCAGCAAATAAACAGAGAGAACGCTCG
TAAAATTCTTAGATGACATTACGGAAATACGTCCATTAAAAATAGTGACC
CTAGAAGATATTTACATTATATTTTATTCGATGACCTTACTTGCAAAGAC
CCGTCCCAGAGTGTGAGTTAAGTTTCCATTATATAACCAGCCATTATTTA
TATAGCCATTATTTACAATATTTATAACGACGACAAAATACGACTCAGCA
ATAATTAGATAGTAAGTTACAAAGATGTCCATAGTAGAATGTGATCTTTG
CAAGGGTAGTTGTTAGGGATATCTATTCATCAGCATTTCAATAGTGTTAA
AAACAGAATCAAAACATTCCTAAAATACATTACATTCAATATCGTCTCAA
TTTATCGCCTTTCAACAACTCGTTACTACAATCTGTGACTAAATATTGTG
TCAAGAATTCCCTCCCCCCCCCTAGTATCAATGTTGATGGGTGGAAAGGT
TGCCACCatgctcagaataagctcacATCAACACTGATATTAGGGGGAAG
GGATCTTTCAAGATATTGCCAAATATTTAGTCACCGATTGTAGttacttt
cgaatttttttcgattCTCTGATTCTCTGCCCCTTTTTCAAATTAGTCCA
AGAAAGAGCGATCCAAAAAGTGAACAtaatattagaccaacttgactttt
gatCCTCATAGAAATTGAAGAGTATTGTATTTCTATAGAAAGGGCGATTG
TTCGTTGGTGTAGACAAGTAATTGacaaatatcatcaaaatcatgCATTT
TTGTACTGTTCATGTCCAATATACGCACTCCTCCAATACTCTA Run BLAST on NCBI transcript from alignment at sc0000569:191458..193210+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00026316 ID=TCONS_00026316|Name=TCONS_00026316|organism=Clytia hemisphaerica|type=transcript|length=1753bp|location=Sequence derived from alignment at sc0000569:191458..193210+ (Clytia hemisphaerica)
tgcAAGACGAGTTTCATtaaagaggaacaaacgtgacgAAGGGAGTTTCT
TTCGGGGGTAGCTGTTGTCTTAAACACAGACactatccgccgcgaaacat
aattcgttttataatatacaaactatgttatatcataataatatattata
cggacgatagcatcgtctacccCAAATATCCCCATTCCGATAACAAACAC
ATAGACTGTTCATATTGATCCATGTTTTgggattgattgatttatttatt
ggcgtgattaaaatttataaattctgATAAAAGCAGGCCCGGCGGAgcaa
ccgtaaaagtggagaggctgaaagCTTAAATTGGGATAAAATTCGCTAGC
AATTTGGAGTtatagaaatttgagaaaataaaaaataattgcccgcttcc
accgggcctgaaaagaattgaaaaaaattaataaatattcagtatagaaa
aaataaattgaaaaaaaagctaCAAATATAATCTCCTCACACGATTGGCA
TTATTGAGAGTCTGAATATTTCCTCTGTATTATGCTTCCGCAagacaaaa
ttcaaaaaattattttctggaACACATGTCCGTGAAAAATGCGATGTAAT
ATTTTAAATAGatgttagaaaaataaatttacaccCTATGTTCAGGAGGT
TATATTTTCCGTCCAGAGGGCATGGGAAAGGATGCTCAAATACCTGAACG
AATCCATGCATGGGCTCTCTTAAAATAGAATCtttattgttgtttatgaa
atataacaacaacaacacctGACTCAGCAAATAAACAGAGAGAACGCTCG
TAAAATTCTTAGATGACATTACGGAAATACGTCAATTAAAAATAGTGACC
CTAGAAGatatttacaatatattttattcTNACAGAGAGAACGCTCGTAA
AATTCTTAGCTGACATTACGGAAATACGTCCATTAAAAATAGTGACCCTA
GAAGATATTTACATTATATTTTATTCGATGACCTTACTTGCAAAGACCCG
TCCCAGAGTGTGAGTTAAGTTTCCATTATATAACCAGCCATTATTTATAT
AGCCATTATTTACAATATTTATAACGACGACAAAATACGACTCAGCAATA
ATTAGATAGTAAGTTACAAAGATGTCCATAGTAGAATGTGATCTTTGCAA
GGGTAGTTGTTAGGGATATCTATTCATCAGCATTTCAATAGTGTTAAAAA
CAGAATCAAAACATTCCTAAAATACATTACATTCAATATCGTCTCAATTT
ATCGCCTTTCAACAACTCGTTACTACAATCTGTGACTAAATATTGTGTCA
AGAATTCCCTCCCCCCCCCTAGTATCAATGTTGATGGGTGGAAAGGTTGC
CACCatgctcagaataagctcacATCAACACTGATATTAGGGGGAAGGGA
TCTTTCAAGATATTGCCAAATATTTAGTCACCGATTGTAGttactttcga
atttttttcgattCTCTGATTCTCTGCCCCTTTTTCAAATTAGTCCAAGA
AAGAGCGATCCAAAAAGTGAACATAANTCTGATTCTCTGCCCCTTTTTCA
AATTAGTCCAAGAAACAGCGATCCAAAAAGTGAACAtaatattagaccaa
cttgacttttgatCCTCATAGAAATTGAAGAGTATTGTATTTCTATAGAA
AGGGCGATTGTTCGTTGGTGTAGACAAGTAATTGacaaatatcatcaaaa
tcatgCATTTTTGTACTGTTCATGTCCAATATACGCACTCCTCCAATACT
CTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00026316-exon-sc0000569-1491911889:191458..192274 | TCONS_00026316-exon-sc0000569-1491911889:191458..192274 | Clytia hemisphaerica | exon |
| TCONS_00026316-exon-sc0000569-1510915933:191458..192274 | TCONS_00026316-exon-sc0000569-1510915933:191458..192274 | Clytia hemisphaerica | exon |
| TCONS_00026316-exon-sc0000569-1575043694:191458..192274 | TCONS_00026316-exon-sc0000569-1575043694:191458..192274 | Clytia hemisphaerica | exon |
| TCONS_00026316-exon-sc0000569-1491911889:192372..192979 | TCONS_00026316-exon-sc0000569-1491911889:192372..192979 | Clytia hemisphaerica | exon |
| TCONS_00026316-exon-sc0000569-1510915933:192372..192979 | TCONS_00026316-exon-sc0000569-1510915933:192372..192979 | Clytia hemisphaerica | exon |
| TCONS_00026316-exon-sc0000569-1575043694:192372..192979 | TCONS_00026316-exon-sc0000569-1575043694:192372..192979 | Clytia hemisphaerica | exon |
| TCONS_00026316-exon-sc0000569-1491911889:193043..193210 | TCONS_00026316-exon-sc0000569-1491911889:193043..193210 | Clytia hemisphaerica | exon |
| TCONS_00026316-exon-sc0000569-1510915933:193043..193210 | TCONS_00026316-exon-sc0000569-1510915933:193043..193210 | Clytia hemisphaerica | exon |
| TCONS_00026316-exon-sc0000569-1575043694:193043..193210 | TCONS_00026316-exon-sc0000569-1575043694:193043..193210 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000569 | supercontig | sc0000569:191458..193210 + |
Blast
The following BLAST results are available for this feature:
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