TCONS_00026293 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026293
Unique NameTCONS_00026293
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length864

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026293 ID=TCONS_00026293|Name=TCONS_00026293|organism=Clytia hemisphaerica|type=transcript|length=864bp
NNCATCCAGAATTAAAGGAAGTAAGCGTATTACAGTAATGATCAATACAT
GTAATGGAGTTTGTTCCACAACCACCAGCAGTGGTAAAGATTCAATATCA
GGGAAATGCATAAAAGATGGGattgtttataaaaatataacattCTTTAA
AGGACATAAAACAAAGGAGATCACATTTAGGGTAACATCGGCTTCATCGT
GCCGTTGTAAATAAAAACTATGCTTCATTTAGATGAGTAAACCAGGAAGA
AAATCATAAACTAAATGTTGTggaactttttttattgtaatattTTATGC
AGTCTTTTTCAGAATATAACTCAAATTTACAATTCATTGTAAATATGAAA
TGTAAGAGAGTATTAAAAAAGTAACCATGTAAAAAATCTTCCATAACTTT
TGACGTGTATTTATACAATGGAAAAGAGAGTGTGAATTGGCATTTATTAT
CAGCGAGAATTTCGGCATCATTAATGACGCCATCATCTTTTGTAAATACT
AAAGATAGGAGCAATGTTTTTTGCTCTAATTTTGCTTTGATAAAACCCTT
AACTGTGCTAAATCTTCATAAAAATCTTTGAGGAGACTAattattgtgta
ttttttacAGACAGATTTGCCTATGATTACCCCTTTCGCCTAAATCTATC
CTGGATTTCTGTGCCACaggattataaaaaaaatttgacttgaGATTTGT
CCATTGTCGTAGGTAATTAATACGGTCGGTAAATTCGGACCGTTGTATGC
TTAAAATGAGAATCTTAGTAAGACACAAAACTGGTAAATAACAAACTACT
CATTATGGTCGAACTGAACTTTTGGCCTTAGATTGCTTATTACTGTTAAA
AGATTTATCTCAGA
Run BLAST on NCBI

transcript from alignment at sc0000566:26197..27060

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026293 ID=TCONS_00026293|Name=TCONS_00026293|organism=Clytia hemisphaerica|type=transcript|length=864bp|location=Sequence derived from alignment at sc0000566:26197..27060 (Clytia hemisphaerica)
TCTGAGATAAATCTTTTAACAGTAATAAGCAATCTAAGGCCAAAAGTTCA
GTTCGACCATAATGAGTAGTTTGTTATTTACCAGTTTTGTGTCTTACTAA
GATTCTCATTTTAAGCATACAACGGTCCGAATTTACCGACCGTATTAATT
ACCTACGACAATGGACAAATCtcaagtcaaattttttttataatcctGTG
GCACAGAAATCCAGGATAGATTTAGGCGAAAGGGGTAATCATAGGCAAAT
CTGTCTgtaaaaaatacacaataatTAGTCTCCTCAAAGATTTTTATGAA
GATTTAGCACAGTTAAGGGTTTTATCAAAGCAAAATTAGAGCAAAAAACA
TTGCTCCTATCTTTAGTATTTACAAAAGATGATGGCGTCATTAATGATGC
CGAAATTCTCGCTGATAATAAATGCCAATTCACACTCTCTTTTCCATTGT
ATAAATACACGTCAAAAGTTATGGAAGATTTTTTACATGGTTACTTTTTT
AATACTCTCTTACATTTCATATTTACAATGAATTGTAAATTTGAGTTATA
TTCTGAAAAAGACTGCATAAaatattacaataaaaaaagttccACAACAT
TTAGTTTATGATTTTCTTCCTGGTTTACTCATCTAAATGAAGCATAGTTT
TTATTTACAACGGCACGATGAAGCCGATGTTACCCTAAATGTGATCTCCT
TTGTTTTATGTCCTTTAAAGaatgttatatttttataaacaatCCCATCT
TTTATGCATTTCCCTGATATTGAATCTTTACCACTGCTGGTGGTTGTGGA
ACAAACTCCATTACATGTATTGATCATTACTGTAATACGCTTACTTCCTT
TAATTCTGGATGNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014774XLOC_014774Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026293-exon-sc0000566-1491911889:26197..27060TCONS_00026293-exon-sc0000566-1491911889:26197..27060Clytia hemisphaericaexon
TCONS_00026293-exon-sc0000566-1510915933:26197..27060TCONS_00026293-exon-sc0000566-1510915933:26197..27060Clytia hemisphaericaexon
TCONS_00026293-exon-sc0000566-1575043694:26197..27060TCONS_00026293-exon-sc0000566-1575043694:26197..27060Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000566supercontigsc0000566:26197..27060 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.105638	0	0.0599997	0	0	0	0.130387	0.547721	0.621904	1.42677	0.613245	0.288185	0.224462	25.4663	52.117	0.935205	1.20861	5.46992	3.79583	0	0.0766317	0.0621039	0.0564615	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00026293 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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