|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026173 ID=TCONS_00026173|Name=TCONS_00026173|organism=Clytia hemisphaerica|type=transcript|length=1870bpRun BLAST on NCBI protein sequence of TCONS_00026173-protein >TCONS_00026173-protein ID=TCONS_00026173-protein|Name=TCONS_00026173-protein|organism=Clytia hemisphaerica|type=polypeptide|length=285bp MAGLMCRNFGLFRTSNLNFALKNVSKSLKNRTIILSVTSNEKETGSLFQRRun BLAST on NCBI transcript from alignment at sc0000564:4212..23767+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00026173 ID=TCONS_00026173|Name=TCONS_00026173|organism=Clytia hemisphaerica|type=transcript|length=19556bp|location=Sequence derived from alignment at sc0000564:4212..23767+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000564:4212..23767+ >TCONS_00026173 ID=TCONS_00026173|Name=TCONS_00026173|organism=Clytia hemisphaerica|type=CDS|length=7722bp|location=Sequence derived from alignment at sc0000564:4212..23767+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00026173 vs. Swiss-Prot (Human)
Match: NIPS1 (Protein NipSnap homolog 1 OS=Homo sapiens GN=NIPSNAP1 PE=1 SV=1) HSP 1 Score: 210.69 bits (535), Expect = 3.192e-62 Identity = 107/233 (45.92%), Postives = 149/233 (63.95%), Query Frame = 1
Query: 265 VSAPSDAHSKTLTDN-NSVTYEIIFDVVKPEFKKEYLKATSEAQTYLNDSKEYPGQLQGSWSTIYGDMDQSVHLWMYNG-YSEMSKKHNFESEDEAYQEYARNKAKWLNSRRNQICHHFGYWGEPTPRQPSHIYEMRSYTLKPGTLIEWSNNWGQAISIRR--KDAVGGFFSQIGDLYQVHHVWAYRDLEHRQKAREKMWQQPGWDDCVAATVPLVRDMKANILKPNPHSPMQ 951
V DAHS L+ S Y+I F VKPE+ Y T L+ ++YP L G+W+T YG+ DQ+VHLW ++G Y + N ++ Y E+ R +++ L SRRNQ+ F +W EP PR +IYE+R+Y LKPGT+IEW NNW +AI R+ ++AVGGFFSQIG+LY VHH+WAY+DL+ R++ R W++ GWD+ V TVPLVR M++ I+ P SP+Q
Sbjct: 52 VDPRKDAHSTLLSKKETSNLYKIQFHNVKPEYLDAYNSLTEAVLPKLHLDEDYPCSLVGNWNTWYGEQDQAVHLWRFSGGYPALMDCMNKLKNNKEYLEFRRERSQMLLSRRNQLLLEFSFWNEPQPRMGPNIYELRTYKLKPGTMIEWGNNWARAIKYRQENQEAVGGFFSQIGELYVVHHLWAYKDLQSREETRNAAWRKRGWDENVYYTVPLVRHMESRIMIPLKISPLQ 284 The following BLAST results are available for this feature:
BLAST of TCONS_00026173 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2026, MARIMBA.