TCONS_00026173-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00026173-protein
Unique Name	TCONS_00026173-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	285

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00026173-protein ID=TCONS_00026173-protein|Name=TCONS_00026173-protein|organism=Clytia hemisphaerica|type=polypeptide|length=285bp
MAGLMCRNFGLFRTSNLNFALKNVSKSLKNRTIILSVTSNEKETGSLFQR
FWDSVDVSAPSDAHSKTLTDNNSVTYEIIFDVVKPEFKKEYLKATSEAQT
YLNDSKEYPGQLQGSWSTIYGDMDQSVHLWMYNGYSEMSKKHNFESEDEA
YQEYARNKAKWLNSRRNQICHHFGYWGEPTPRQPSHIYEMRSYTLKPGTL
IEWSNNWGQAISIRRKDAVGGFFSQIGDLYQVHHVWAYRDLEHRQKAREK
MWQQPGWDDCVAATVPLVRDMKANILKPNPHSPMQ

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_014719	XLOC_014719	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00026173	TCONS_00026173	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR012577	NIPSNAP
IPR011008	Dimeric_a/b-barrel

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.70.100		coord: 178..285 e-value: 1.1E-27 score: 96.2 coord: 62..177 e-value: 1.3E-13 score: 50.9
IPR012577	NIPSNAP	PFAM	PF07978	NIPSNAP	coord: 188..283 e-value: 9.5E-27 score: 93.1
IPR011008	Dimeric alpha-beta barrel	SUPERFAMILY	54909	Dimeric alpha+beta barrel	coord: 76..176
IPR011008	Dimeric alpha-beta barrel	SUPERFAMILY	54909	Dimeric alpha+beta barrel	coord: 181..285

Blast

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BLAST of TCONS_00026173-protein vs. Swiss-Prot (Human)
Match: NIPS1 (Protein NipSnap homolog 1 OS=Homo sapiens GN=NIPSNAP1 PE=1 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 3.377e-67
Identity = 107/233 (45.92%), Postives = 149/233 (63.95%), Query Frame = 0

Query:   57 VSAPSDAHSKTLTDN-NSVTYEIIFDVVKPEFKKEYLKATSEAQTYLNDSKEYPGQLQGSWSTIYGDMDQSVHLWMYNG-YSEMSKKHNFESEDEAYQEYARNKAKWLNSRRNQICHHFGYWGEPTPRQPSHIYEMRSYTLKPGTLIEWSNNWGQAISIRR--KDAVGGFFSQIGDLYQVHHVWAYRDLEHRQKAREKMWQQPGWDDCVAATVPLVRDMKANILKPNPHSPMQ 285
            V    DAHS  L+    S  Y+I F  VKPE+   Y   T      L+  ++YP  L G+W+T YG+ DQ+VHLW ++G Y  +    N    ++ Y E+ R +++ L SRRNQ+   F +W EP PR   +IYE+R+Y LKPGT+IEW NNW +AI  R+  ++AVGGFFSQIG+LY VHH+WAY+DL+ R++ R   W++ GWD+ V  TVPLVR M++ I+ P   SP+Q
Sbjct:   52 VDPRKDAHSTLLSKKETSNLYKIQFHNVKPEYLDAYNSLTEAVLPKLHLDEDYPCSLVGNWNTWYGEQDQAVHLWRFSGGYPALMDCMNKLKNNKEYLEFRRERSQMLLSRRNQLLLEFSFWNEPQPRMGPNIYELRTYKLKPGTMIEWGNNWARAIKYRQENQEAVGGFFSQIGELYVVHHLWAYKDLQSREETRNAAWRKRGWDENVYYTVPLVRHMESRIMIPLKISPLQ 284

The following BLAST results are available for this feature:

BLAST of TCONS_00026173-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00026173-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
NIPS1	3.377e-67	45.92	Protein NipSnap homolog 1 OS=Homo sapiens GN=NIPSN...	[more]

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TCONS_00026173-protein (polypeptide) - C. hemisphaerica