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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026149 ID=TCONS_00026149|Name=TCONS_00026149|organism=Clytia hemisphaerica|type=transcript|length=678bp
GAGAGATTGGTTTTATTGCATTTAAATACTTTAATATACAATGTgacaga
ataaaaaaaatttcagtcaagaGTGAGAACTTTAAAAAATGCCGAATAAA
ATGTTTTCGTTTTTAGTTTGTTGTCATTATTTTGATCGGCTGTTGAGATC
TTCATGCCATTTGAATCGATTACAATTAAAACACCGTTTAGTGTTTTGGT
GGGGATTCTGGTTCGGTCTTGTATTTTCCTTGGTACAAACAGGCGTTCCA
TTTCTCGTTGAACAAAAGTCCTGATGGGCAAGCGATACATCCAACAGTTT
GTCCGTGGAAGCAAGCGACGTATTGTCGTGGTTCATGGTCGTCTTTGATG
TTTCCGCTGAAGTGTGGTCCACGGGCTGGGCATTTGTCTGGGCAAGCGAA
GGTGGTTGCTGGTTCCCATGGTTGTGTGGTGACGCACTCGTCTTTTCGGT
TGTACAAACATTGGTTGCATCCTTCGCTGAATTCCAAGGACAATGGGAAG
CATGGTTGGCAAGAAGCTAATCCGTTCGAGCATTGGAGGAAGTAGTTGGC
TCTGTATCGGCCATAGTAGTGATATTCGAAGTTTCCGTCAGATTTTCCTT
TGCAGAGGGAGTCTGGGCAGGGGACAGCTGGTGGTGTGGTACCGGTTTGT
GTTCCAACTTCGAGGGAGTAGGCAGCTA Run BLAST on NCBI transcript from alignment at sc0000563:63559..72200- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00026149 ID=TCONS_00026149|Name=TCONS_00026149|organism=Clytia hemisphaerica|type=transcript|length=8642bp|location=Sequence derived from alignment at sc0000563:63559..72200- (Clytia hemisphaerica)
GAGAGATTGGTTTTATTGCATTTAAATACTTTAATATACAATGTGACAGA
ATAAAAAAAATTTCAGTCAAGAGTGAGAACTTTAAAAAATGCCGAATAAA
ATGTTTTCGTTTTTAGTTTGTTGTCATTATTTTGATCGGCTGTTGAGATC
TTCATGCCATTTGAATCGATTACAATTAAAACACCGTTTAGTGTTTTGGT
GGGGATTCTGGTTCGGTCTTGTATTTTCCTTGGTACAAACAGGCGTTCCA
TTTCTCGTTGAACAAAAGTCCTGATGGGCAAGCGATACATCCAACAGTTT
GTCCGTGGAAGCAAGCGACGTATTGTCGTGGTTCATGGTCGTCTTTGATG
TTTCCGCTGAAGTGTGGTCCACGGGCTGGGCATTTGTCTGGGCAAGCGAA
GGTGGTTGCTGGTTCCCATGGTTGTGTGGTGACGCACTCGTCTTTTCGGT
TGTACAAACATTGGTTGCATCCTTCGCTGAATTCCAAGGACAATGGGAAG
CATGGTTGGCAAGAAGCTAATCCGTTCGAGCATTGGAGGAAGTAGTTGGC
TCTGTATCGGCCATAGTAGTGATATTCGAAGTTTCCGTCAGATTTTCCTT
TGCAGAGGGAGTCTGGGCAGGGGACAGCTGGCGGTGTGGTACCAGTTTGT
GTTCCAACTTCGAGGGAGTAGGCAGCTGAAAAATAAGAAGTGCTTTGTTA
GTATACATCGGTCATCATGACAAGTGAAAATGTTTGAACATCATTCTAAT
CGTATTCAATCAAGTTGAAGTCAAGGTTGCTTCATTTTCTAGACATTTAC
GAAAATAGATACAATAGTATTCCTTGAACTCTCCTTCAACTATAACCTCA
GAAAGGACAAAAAAATATAATTAAATGCTTACCAGCCACAATATTGAGCT
TTGCCTTTAACAGGCGAAACGCCCTAATTTGCACATATCTATGCTTCAAT
AAAATAATATCCCTTGAATCCACTATAACCTGAGAAAGGACAAAGAAATA
TGTATTTGTTAACAAAATAAAATACTTACCAGCCACAAGAGTGATGAAAA
TAAAAGCCTTCATTTTTGTCGTTTTCTTCTTCTTGAAGTTGTTGTCTTCA
GATGTAAGATGATTTTGAAATGCAAAACTCCAGGTTTTTATACTGGAGGC
CTATCATGGAAAATCATCTAATTGGTTTGATTATATAAGTTTCCGGATTA
AACTAATAATAATGTCGATGCGCTTTGAGGAAGTGCTGTATTATCATTTT
GACAGACAATCTGTTTCCCATCTCATACAATAAAATTCCTTGAAATCACG
CTAATGACCACGTGATTAGAGAGCTCTCTGCTAACCATTCCTCGTCCCAT
ACTGTTATTGCTAATCTCGGATCCCATTAAACTCTGTTACTACAGTATAG
GATAATATCAATGTGATGTAACGAAGAATTATGATAAGCTAAATTATGAT
GTTATGAGAGCCCGGTAATTATAATTTCCAGGCGATCAGTGGGTTGTTTG
GAAATTCGTAAATCTGATACTACTTAAAGCTGTATTTTAATGATAATACG
TTATAGTACTGCGTGTAAAAAGTTTAGCGTTCTCTTAAAATATAACTTGT
GGAGACGGGAAATAAGAATTCTTACCCCTGTCTTATTTCAATCACATTAC
TATCCAAAGAACCGAAGATATTAAGCTGAAACATATTATCAATATCAATA
ATTTGGCACTTTTTCTTTGGGTAAATTAAAATTCAGCTTATTGGTGGAAC
AAGAAGATATACAAGGGGACCCATTGCACGAAATTTTACAAACGTTTTGT
TGACTTCTTTTCATGATTCATGATACATATAAAGCAGTTCTGAATAAAAC
TAATGAGATAACAACATTCTATGCTCGCTTACCCTAACCGCACTTACGAG
TCCTAAGAAGGACGAAGCACGCAATTAGATAAATTTTTTTATAATGAATT
TTATGTAAAGTTTGAAAATTGAACAAAGANATTAGATAAATTTTTTTATA
ATGAATTTTATGTAAAGTTTTAACATTGAACAAAGAGTCCAAAAAATTTC
CAATCAAAGACGGGTATTATTATATAGTTCTGAGACCATATGAAGCCTAT
ATGCTAAATTTCAGTCACGCATACTGTTTTAACAGGATAAAAATTGGACT
CTACGAGACTAATAACTTATGCAGAACGCTTCAAGGTACATCTCGCTATG
TTTGAGTATCATAAAACAGTAAGTAAAATGATAGTTCTAGATAACTAGAG
AGGGCAAATTGCTTTTAAAGTATATAATCCTATCATATTGAATTCCGTGA
AGGTCTGTCTAACTCAGACCGTGTCTTGCTTTACGTAGGATCTTGGAAGA
CTTTATAATCACAAAAAAGGGGCGATCACCCCGTTTCCACAAAGTTTTTG
ACTTTATTAATCGTGACCATCATTCCAAATTCTCTTCAAGTATGGTATTC
CTTAAACTTTAGTCAATGCCATTAAAGTAATGTATCGAGACACTCCTGCG
ATGGTTACATCCCGCAAAGGACAAGCTGATCTTTTCCAAATCGGAATTGG
GGTTCTTCAAGGCAATCCTTAAGCAACTTTCTTCTTTATAATTGTGCTCT
GGACTACTACTATTGCTATTGACCATGGCCTTACTTTTAAACGTCGTCGC
ATAGGAGACACCCTCCTGAGCGACGAGCTGATCAAGACGATAAGGCGATA
TTTTTCTACTGGAAAACCATATTGATGCTGCTCAGACTCTTCTTCCTTCT
GTGGAACTGGCATGTCCGAATTTAGGTCTATTCTTAAATGCCAAAAAAAA
AAATCAATCCACATCATCCGCACTAATGACGACAAACTGTTTTCCTCGAG
TGGTTCAGAGATCGAAAGAGTTGACAATTTTCTTTCTTGGAAGTTACACT
GAAACGGATCCCGATATATGAACGTCAGAATAGCCCAAGCGTGGAATACT
CTTCATTCCCTTCGCAAAGTATTGAAATCAAACATTTTAAAACCTACCAA
AACTAAAGTGTTACAAACTTATGTTGAATCTATACTGTTATATGGCTCTG
AATCTTGGACCTTAAACACCTCAAGAGCAAAACGCCCCGACGGTACATAT
ACAAGAATACTATGGGTAGCCTTTGATATCTCTTGGAAGAATCATCAATC
TATTGTTCAATCTATGGTAAATTACCCCGCATTTCAAAAGTTGTCCGTCG
CCAACGCTTAGCTTTAGCCGTCATGTTTTAAGACACAATAAACCTGCTGG
AAAACTACTGAGCTGGATCCCCGAGAAGATGACCTATTGCATAGATCTCA
CAACAGCCATGAGAAAAGGAGAAACAGCTATGTATTGACTTAAACGAATG
CATCAAGTAGAAATAAGTGAGAGAGGACCGGAAAATGGAAAATGACTTTT
GGAATCATTCAGTACCGTGAAAGGCACAGCTCAAAATCATATATTTACGC
TGTGCCGACGAATCGAGATTCTATTCATCGCGCAATCAGTGAAGACAAAA
GTAACCATGACGACCATCCAAGATNNGTGATAGAGAATCATAACATAAAG
TCTGTCTATTATTTCGATTCAATTAAAGTGACATTTCCATAATTAAAAGT
TTAGTAATTACTGTTATACATTTGGGAATCATGTAAAAGATTTCTTTCGA
AAGAAACTCATTTCAATTACACTTGGAGGTTTCTGGGGNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNGACATTAATAAGGTAATATTTGCTCTTCATCTTTGATT
CTTTCTACAATGATTAGATTGACACATGCGCGATAAAATTTATATTATCG
GTCTTCAGAGGTTACTATTTTCTTTGAAAACTTAACCTCTGATACTCAGG
GTAATCATTCAGTATATCTGACGATTATGTAAACATGATACTTTAAGTAA
CCCAGCTGGCACACAACGTTGTTTCACCGTTCATCTAACGTTATATGGAC
GTTGTAAACGTTAAATAAACGTTGAAACAACGTTGTGTGCCAGATGGGAA
TGTCTTTTTAAGGTGGTAGTCTACCGCCAGATTTCAAAAGTCAAAAAATC
ACATTTTTTGCAATAACTCAAGAACTTCTTTACATTTTGTAATGAAATTT
TCAGGAAATGTATATCAACTATTAACATTTCTAAAAATAAAAAAAAATTC
TAAAAATAACCAAAGACGGGGGTAAAATCAGCCAGGGGGTAAAANNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNAAAATGCCGACAACTTAAATGTTTT
TCGCAGAAATCCAGCAACACAACCAATGTAGAGCAACTTTATAGATTCTG
TAGAGTCCATTCTTCATTTAAATAAGTCATTTCAATCAAAGAGATTAAGT
TTTGATCTAAAACTTGTCAAGAAATCTGCAGAATCATGCTTACAGCTTGC
TTTTCAGCTGGTTTTGATGTGTTACACTACTGCAGCTACCATCTTTAATT
TTAAGGATTACGTAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACTGCGGCCTGAATGATAAA
GATATAGCTCTGAAATTTTCAGGAGATGTTCAGAAAGACCTAAGGATCTC
AAAACACCCAAAAACCAGAATTCGACAATTTCTTCGATGATTTTTTATTT
TTGGGTAGACTACCACCTTAAATGTTTTTTACGATGAAGATATTTCACCT
TTTCGCTAGTTTTTAGCAATTTTGATCAATATTTGAGCCAAAATAACAGC
CCCGCTGGAACTTTTATTTTCAGTGGGGATGAAAATTCTTATTGAAATGC
CAATGGGAGTAAAGATTCTCTAAGGTAAAAAAATTCAGTGGGATGGTTTT
AGAGTGCATTCTTTTACATTCAATTTCAAATGGGATGGAAACCAAAACAA
TGTACTGAAATTGTTGGGTATTTTCCCACAGGGGACGCCATTTTAGCCAA
ATTTTCCAGTATGACTGGGGTCCCACCGAGTCTGTGACACAGGGGTGTCA
AATAGAACAGCGTTTCAATATGTCGGGTTGTTATTCGCTACAATACCAAA
ATTAAATACAAATTTCCAAAATCTGCCCGGGGTGGAAAAATGAGATTAAT
TCTCACCGGGTCCACTCATTATTCCATTGTGCTTAAAATTAGACCGTTTT
TAGCAATTTTTTCAACAATTTACTCACCGGGAGGATCTGACCGGGTTACT
GATACGGAAGTGTACTGTCAAATTGTATTTCCCCTATGTCTGAAAGCTAA
AAAAAGATTTCTAATTCCCACTTATTGAAAATATGAATAAGAATGTTGAA
ATAATCTATTGAATCATTTTTCATATATATAACTAATGGCACGAACATAG
AATACAACACTAAAAGGTTCCAGCCCTCCCGCAAAAAAACTTCTAGATTA
TACTGCCAGGAAAGAGGAACCTTATAAAAAGAAAAACGAGAAAACAAATT
GAATCATCTTCTCAGGAGAACATTTGGAAGAGTGCAGTGATACTAGTAAT
GAACGATTTAATAAAATTTCTGTTGCTTTGAAAAGAGATGTCAGTTGATT
TGTATTCCATATATCAAAAAGACATGATTTTAGTAGAGAGAGATTGGTTT
TATTGCATTTAAATACTTTAATATACAATGTGACAGGATAAAAAAATTTC
AGAATGAGAACTTTAAAAAATGCTGAATAAATGTTTTCGTTTTTATAGTT
TGTTGTCATTTTGTTGTCATTATTTTGATCGGCTGTTGAGATCTTCATGC
CATTTGAATCGATTACAATTGAAACACTGTTTAGTGTTTTGGTGGGGATT
CTGGTTCGGTCTTGTATTTTCCTTGGTACAAGCAGGCGTTCCATCTTTCG
TTGAAAAAAAGTCCTGAGGGGCAAGCGATACATCCGACAGTTTGTCCGTG
GAAGCAAGCGACATATTGTCGTGGTTCATGGTCGTCTTTGATGTTTCCAC
TGAAGTGTGGTCCACGGGCTGGGCATTTGTCTGGGCAAGCGAAGGTGGTT
GCTGGTTCCCATGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNGTTCCCATGGTTGTGTGGTGACGCA
TTCGTCTTTTCGGTTGTACAAACATTGGTTGCATCCTTCGCTGAATTCCA
AGGACAATGGGAAGCATGGTTGGCATGAAGCTAATCCGTTGGAGCATTGG
AGGAAGTAGTTGGCTCTGTATTGTCCATAGTAGTGATATTCGAAGTTTCC
GTCAGATTTTCCTTTGCAGAGGGAGTCTGGGCATGGGACAGCAGGTGGTG
TGGTACCGGTTTGTGTTCCAACTTCGAGGGAGTAGGCAGCTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00026149-exon-sc0000563-1575043694:71571..72200 | TCONS_00026149-exon-sc0000563-1575043694:71571..72200 | Clytia hemisphaerica | exon |
| TCONS_00026149-exon-sc0000563-1575043694:63559..63606 | TCONS_00026149-exon-sc0000563-1575043694:63559..63606 | Clytia hemisphaerica | exon |
| TCONS_00026149-exon-sc0000563-1510915933:71571..72200 | TCONS_00026149-exon-sc0000563-1510915933:71571..72200 | Clytia hemisphaerica | exon |
| TCONS_00026149-exon-sc0000563-1510915933:63559..63606 | TCONS_00026149-exon-sc0000563-1510915933:63559..63606 | Clytia hemisphaerica | exon |
| TCONS_00026149-exon-sc0000563-1491911889:71571..72200 | TCONS_00026149-exon-sc0000563-1491911889:71571..72200 | Clytia hemisphaerica | exon |
| TCONS_00026149-exon-sc0000563-1491911889:63559..63606 | TCONS_00026149-exon-sc0000563-1491911889:63559..63606 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000563 | supercontig | sc0000563:63559..72200 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002557 | Chitin-bd_dom |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005576 | extracellular region |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006030 | chitin metabolic process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008061 | chitin binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006030 |
chitin metabolic process |
| cellular_component |
GO:0005576 |
extracellular region |
| molecular_function |
GO:0008061 |
chitin binding |
Blast
The following BLAST results are available for this feature:
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