|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026089 ID=TCONS_00026089|Name=TCONS_00026089|organism=Clytia hemisphaerica|type=transcript|length=2790bpRun BLAST on NCBI protein sequence of TCONS_00026089-protein >TCONS_00026089-protein ID=TCONS_00026089-protein|Name=TCONS_00026089-protein|organism=Clytia hemisphaerica|type=polypeptide|length=888bp MSADDPPYSVEYAKSGRASCKGCKNTISQATLRIARMVQSPHFDGKVPNWRun BLAST on NCBI transcript from alignment at sc0000562:166646..192280+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00026089 ID=TCONS_00026089|Name=TCONS_00026089|organism=Clytia hemisphaerica|type=transcript|length=25635bp|location=Sequence derived from alignment at sc0000562:166646..192280+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000562:166646..192280+ >TCONS_00026089 ID=TCONS_00026089|Name=TCONS_00026089|organism=Clytia hemisphaerica|type=CDS|length=63936bp|location=Sequence derived from alignment at sc0000562:166646..192280+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00026089 vs. Swiss-Prot (Human)
Match: PARP1 (Poly [ADP-ribose] polymerase 1 OS=Homo sapiens GN=PARP1 PE=1 SV=4) HSP 1 Score: 752.281 bits (1941), Expect = 0.000e+0 Identity = 415/918 (45.21%), Postives = 578/918 (62.96%), Query Frame = 3
Query: 132 ADDPPYSVEYAKSGRASCKGCKNTISQATLRIARMVQSPHFDGKVPNWXXXXXXXXXXXXXEEGDF--GKFDSIRWDDQERLREKLNXXXXXXXXXXXXXXXXXXXXXXXDVVDGPSSRETMEFSIEYAKSSRAKCRKCEEKIEKGVIRISKLMEPEEKKFAAQVPHWHHVECFLLRREELEAET-FGAADIPGFSSLSAEDQKEVSAKVARPKTNTXXXXXXXXXXXXXXXXANAE--------KDAQKKQNDRYWKVRDGLYQACTNSDLKTMLSANGYDTTGGEDSLLDRCADGVLFGALELCPECKNGRLVLSTTKNGYKCTGNVSGWTACTYLTQKPARKMWLIPTDLRKESDFLTKIKLKVRERIFPNKLQKDXXXX-------------XXXXXGKPLQNKIMVLVGRLKQTQSELKEKVENLGGSITSTPTPDCFCCISNPGEVAKGSVKMGTVEKYNIPVVTEEYL-DALDKTGGAKKILTQYAIAPWGGNR-----EQVNTSSKSQGTKRKNTAAENASGG--GASKKSKLTVKGGAVVDTDTDLEDTHHILNTNKVVYAAVLGLVDLSRGSNSYYKLQILEPDDTKKTRFYYLFRAWGRVGTSIGGNKLEKFLNKENAIEHFEDLYYEKTGNEWGNRTNFVKQPNKFYPLDIDYGQEDEEVQS-RIAPGSKSTLSKPTQELMKMIFDIEEMKHALLEFEIDLKKMPLGKLSKKQIETAYTCLTECQRYLQDEVTGSKILDASNRFFTLIPHDFGLKTPPLLDNEDIINSKVKMLDSLLEIEIAYSLLKGGSADQEQDPLDVHYTSLKADIKEVDKESDEYKMICEYVQNTHAKTHSHYKLKVQEVFAVDRKGEKKRYRAFRDLPNRQLLWHGSRRTNFAGIISQGLRIAPPEAPVTGYMFGKGVYFA 2786
+ D Y VEYAKSGRASCK C +I + +LR+A MVQSP FDGKVP+W+HF CF+ + D F +RWDDQ+++++ D + + + +F+ EYAKS+R+ C+ C EKIEKG +R+SK M EK + W+H CF+ REEL + A+ + GFS L+ ED++ + ++ K+ K+ E E KK + + + A K QND W ++D L + C+ +DLK +L N GE ++LDR ADG++FGAL C EC +G+LV + + Y CTG+V+ WT C TQ P RK W+ P + R E +L K+K+K ++RIFP + KPL N ++ +G+L + + E+K +E LGG +T T C IS EV K + KM V++ NI VV+E++L D T +++ + ++PWG E V KS K + + G + K+ KLT+KGGA VD D+ LE + H+L V++A LGLVD+ +G+NSYYKLQ+LE D K Y++FR+WGRVGT IG NKLE+ +KE+AIEHF LY EKTGN W ++ NF K P KFYPL+IDYGQ++E V+ + PG+KS L KP Q+L+KMIFD+E MK A++E+EIDL+KMPLGKLSK+QI+ AY+ L+E Q+ + + S+ILD SNRF+TLIPHDFG+K PPLL+N D + +KV+MLD+LL+IE+AYSLL+GGS D +DP+DV+Y LK DIK VD++S+E ++I +YV+NTHA TH+ Y L+V ++F ++R+GE +RY+ F+ L NR+LLWHGSR TNFAGI+SQGLRIAPPEAPVTGYMFGKG+YFA
Sbjct: 4 SSDKLYRVEYAKSGRASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFWKVGHSIRHPDVEVDGFSELRWDDQQKVKK--------------TAEAGGVTGKGQDGIGSKAEKTLGDFAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMVDPEKPQLGMIDRWYHPGCFVKNREELGFRPEYSASQLKGFSLLATEDKEALKKQLPGVKSEGKRKGDEVDGVDEVAKKKSKKEKDKDSKLEKALKAQNDLIWNIKDELKKVCSTNDLKELLIFNKQQVPSGESAILDRVADGMVFGALLPCEEC-SGQLVFKS--DAYYCTGDVTAWTKCMVKTQTPNRKEWVTPKEFR-EISYLKKLKVKKQDRIFPPETSASVAATPPPSTASAPAAVNSSASADKPLSNMKILTLGKLSRNKDEVKAMIEKLGGKLTGTANKASLC-ISTKKEVEKMNKKMEEVKEANIRVVSEDFLQDVSASTKSLQELFLAHILSPWGAEVKAEPVEVVAPRGKSGAALSKKSKGQVKEEGINKSEKRMKLTLKGGAAVDPDSGLEHSAHVLEKGGKVFSATLGLVDIVKGTNSYYKLQLLEDD---KENRYWIFRSWGRVGTVIGSNKLEQMPSKEDAIEHFMKLYEEKTGNAWHSK-NFTKYPKKFYPLEIDYGQDEEAVKKLTVNPGTKSKLPKPVQDLIKMIFDVESMKKAMVEYEIDLQKMPLGKLSKRQIQAAYSILSEVQQAVSQGSSDSQILDLSNRFYTLIPHDFGMKKPPLLNNADSVQAKVEMLDNLLDIEVAYSLLRGGSDDSSKDPIDVNYEKLKTDIKVVDRDSEEAEIIRKYVKNTHATTHNAYDLEVIDIFKIEREGECQRYKPFKQLHNRRLLWHGSRTTNFAGILSQGLRIAPPEAPVTGYMFGKGIYFA 898 The following BLAST results are available for this feature:
BLAST of TCONS_00026089 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2026, MARIMBA.